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PAIP1 Gene

protein-coding   GIFtS: 56

GC05M043562
poly(A) binding protein interacting protein 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
MGC12360 2
PAIP-1 3
Descriptions
PABC1-interacting protein 1 2
PABP-interacting protein 1 3
Poly(A)-binding protein-interacting protein 1 3
poly(A) binding protein interacting protein 1 2
polyadenylate binding protein-interacting protein 1 2
External Ids
HGNC: 169451
Entrez Gene: 106052
UniProtKB: Q9H0743
Ensembl: ENSG000001722397
Search outside databases for aliases for PAIP1 gene

Previous GC identifers: GC05M043835 GC05M044703 GC05M043526 GC05M043571

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for PAIP1:
The protein encoded by this gene interacts with poly(A)-binding protein and with the cap-binding
complex eIF4A. It is involved in translational initiation and protein biosynthesis. Overexpression
of this gene in COS7 cells stimulates translation. Alternative splicing occurs at this locus and
three transcript variants encoding three distinct isoforms have been identified. [provided by
RefSeq]

UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074
Function: Acts as a coactivator in the regulation of translation initiation of poly(A)-containing
mRNAs. Its stimulatory activity on translation is mediated via its action on PABPC1. Competes with
PAIP2 for binding to PABPC1. Its association with EIF4A and PABPC1 may potentiate contacts between
mRNA termini. May also be involved in translationally coupled mRNA turnover. Implicated with other
RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS
mRNA mediated by the major coding-region determinant of instability (mCRD) domain

Gene Wiki entry for PAIP1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the PAIP1 gene  

Entrez Gene cytogenetic band: 5p12   Ensembl cytogenetic band:  5p12   HGNC cytogenetic band: 5p12

PAIP1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M043562:     (about GC identifiers)

Start:
43,562,126 bp from pter
End:
43,593,244 bp from pter
Size:
31,119 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000005.8  NT_006576.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074 (See protein sequence)
Recommended Name: Polyadenylate-binding protein-interacting protein 1  
Size: 479 amino acids; 53525 Da
Subunit: Interacts with the RRM1-RRM2 and C-terminus regions of PABPC1 in a 1:1 stoichiometry.
Interacts with EIF4A
Subcellular location: Cytoplasm (Probable)
PDB structures from and Proteopedia :
1JH4 (3D)    
Secondary accessions: O60455 Q96B61 Q9BS63
Alternative splicing: 2 isoforms:  Q9H074-1   Q9H074-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (3 alternative transcripts): 
    NP_006442.2  NP_877590.1  NP_899152.1  


    ENSEMBL proteins: 
    ENSP00000302768 ENSP00000370958 ENSP00000339622 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (PAIP1)
    Human Recombinant Proteins from Abnova (PAIP1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    1 Gene Ontology (GO) cellular component term (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm TAS9548260
    About this table

    Antibodies for PAIP1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for PAIP1
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (PAIP1), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (PAIP1)
    Novus Biologicals Antibodies for PAIP1

    Assays for PAIP1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR003890 MIF4G-like_typ-3
     IPR009818 Ataxin-2_C
     IPR016021 MIF4-like_typ_1/2/3


       GeneDecks  PAIP1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q9H074

    ProtoNet protein and cluster: Q9H074

    1 Blocks protein family: IPB009818 Ataxin-2

    UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074
    Domain: Only the PABPC1-interacting motif-1 (PAM1) stimulates translation initiation
    Similarity: Contains 1 MIF4G domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PAIP1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (PAIP1)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_006451

                  Applied Biosystems Silencer® siRNAs for PAIP1

                  Sigma-Aldrich siRNA for PAIP1  
                         Sigma-Aldrich shRNA for PAIP1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for PAIP1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_006451
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_006451
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_006451 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_006451

    UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074
    Function: Acts as a coactivator in the regulation of translation initiation of poly(A)-containing
    mRNAs. Its stimulatory activity on translation is mediated via its action on PABPC1. Competes with
    PAIP2 for binding to PABPC1. Its association with EIF4A and PABPC1 may potentiate contacts between
    mRNA termini. May also be involved in translationally coupled mRNA turnover. Implicated with other
    RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOS
    mRNA mediated by the major coding-region determinant of instability (mCRD) domain

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003723 RNA binding TAS9548260
    GO:0005515 protein binding IPI9548260 10970864 11997512
    GO:0008494 translation activator activity IDA9548260
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    1 Cell Signaling Technology (CST) Pathway for PAIP1: 
     Translational Control: Regulation of eIF2

       GeneDecks  PAIP1 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  PAIP1 


    5/17 Interacting proteins for PAIP1 (ENSP000003027683 Q9H0741, 2) via UniProtKB, MINT, and/or STRING (see all 17 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PABPCP5P119401, 2STRING (score=.998) EBI-81519, EBI-81531 MINT-18204 MINT-18203 MINT-18202 MINT-18201
    PABPC1P119401, 2EBI-81519, EBI-81531 MINT-18204 MINT-18203 MINT-18202 MINT-18201 EBI-81519, EBI-81531 MINT-18204 MINT-18203 MINT-18202 MINT-18201
    PABPC1P119401, 2EBI-81519, EBI-81531 MINT-18204 MINT-18203 MINT-18202 MINT-18201 EBI-81519, EBI-81531 MINT-18204 MINT-18203 MINT-18202 MINT-18201
    EIF4A1ENSP000003698813STRING (score=.984)
    HNRNPDENSP000003131993STRING (score=.943)
    PAIP2ENSP000002651923STRING (score=.942)
    About this table

    4 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006413 translational initiation TAS9548260
    GO:0006417 regulation of translation IEA--
    GO:0016070 RNA metabolic process IEA--
    GO:0048255 mRNA stabilization TAS11997512
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for PAIP1
    1 Novoseek chemical compound relationship for PAIP1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    pabc 95.98 3 11287632 (1), 14685257 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PAIP1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (PAIP1)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_006451

                  Sigma-Aldrich siRNA for PAIP1  
                         Sigma-Aldrich shRNA for PAIP1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_006451  NM_182789  NM_183323  

    REFSEQ mRNAs for PAIP1 gene (3 alternative transcripts): 

    NM_006451.4   NM_182789.3   NM_183323.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_006451  NM_182789  NM_183323  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_006451
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_006451
                                     untagged cDNA clones in CMV expression vector (see all 5): NM_006451 

    Additional cDNA sequence: 

    AF013758.2 AK308270.1 AL136920.1 BC005295.1 BC015937.2 CR594937.1 CR599012.1 CR600281.1 
    CR601652.1 CR607203.1 CR609051.1 CR609577.1 CR611090.1 CR614417.1 CR617943.1 CR623640.1 
    CR624807.1 CR625180.1 CR626272.1 DQ786248.1 DQ786326.1 

    19 DOTS entries:

    DT.100812925  DT.316904  DT.92029035  DT.99986203  DT.100812933  DT.95075866  DT.92444677  DT.120862609 
    DT.102838137  DT.120862617  DT.95225834  DT.92444689  DT.95225879  DT.100000856  DT.100698936  DT.100715828 
    DT.100812923  DT.120862635  DT.95225854 

    24/270 AceView cDNA sequences (see all 270 ):

    AL548163 CR625180 NM_006451 BQ217727 BM795272 CB114557 CR600281 CR611090 
    BX420716 CR594937 CB215025 AA367274 BM723289 CR609577 CR609051 CR623640 
    CD517438 BM928166 BM782103 CR601652 CR607203 CR624807 NM_182789 BM763148 

    highest scoring ESTs for PAIP1:

    AF013758 BG719757 BG719787 CB148103 CB215025 AA043823 AA126598 AA209236 AA211941 AA367274 

    Unigene Cluster for PAIP1:

    Poly(A) binding protein interacting protein 1
    Hs.482038  [show with all ESTs]
    Unigene Representative Sequence: NM_006451


    GeneLoc Exon Structure

    3 Ensembl transcripts including schematic representations:
    ENST00000306846  ENST00000381546  ENST00000338972  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    PAIP1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for PAIP1

    1 / 2 / 3

    11 probe-sets matching PAIP1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    38978_at2, 3 U95-A 2 1.00 0.50 1.00 1.00 AF013758 0.80 1.00 0.91 1

    208051_s_at2, 3 U133-A 2 1.00 0.50 -- -- NM_006451 0.60 1.00 0.82 1

    209064_x_at2, 3 U133-A 2 1.00 0.50 -- -- AL136920 0.60 1.00 0.82 1

    209063_x_at2, 3 U133-A 6 1.00 0.35 -- -- BF248165 0.40 0.50 0.45 1

    213754_s_at2, 3 U133-A 6 1.00 0.33 -- -- AW613203 0.60 0.75 0.68 1

    210283_x_at2, 3 U133-A 6 1.00 0.33 -- -- BC005295 0.60 1.00 0.82 1

    208051_s_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --

    209064_x_at2 U133Plus2 2 1.00 0.50 -- -- -- -- -- -- --

    209063_x_at2 U133Plus2 6 1.00 0.35 -- -- -- -- -- -- --

    213754_s_at2 U133Plus2 6 1.00 0.33 -- -- -- -- -- -- --

    210283_x_at2 U133Plus2 6 1.00 0.33 -- -- -- -- -- -- --
    GeneDecks  PAIP1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: CAACTTCAAC

    SOURCE GeneReport for Unigene cluster: Hs.482038

    Expression variation in blood from EXPOLDB for PAIP1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for PAIP1 gene from 5/10 species (see all 10 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    PAIP11   -- poly(A) binding protein interacting protein 1 93.79(n)
    97.45(a)
    479343  XM_536482.2  XP_536482.1 
    cow
    (Bos taurus)
    PAIP11   -- poly(A) binding protein interacting protein 1 94.29(n)
    96.45(a)
    510246  XM_587371.3  XP_587371.2 
    rat
    (Rattus norvegicus)
    Paip11   -- poly(A) binding protein interacting protein 1 90.92(n)
    94.08(a)
    365684  XM_345160.3  XP_345161.3 
    mouse
    (Mus musculus)
    Paip11, 5 135
    polyadenylate binding protein-interacting protein 11, 5 92.86(n)1
    97.96(a)1
    2186931  NM_145457.31  NP_663432.11 
     AA4152005  AA6553085  (see all 20)
    zebrafish
    (Danio rerio)
    wufb53g012   -- wufb53g01 74.66(n) 322227  CK236314.1 
    About this table        Species with no ortholog for PAIP1

    ENSEMBL Gene Tree for PAIP1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/218 NCBI SNPs in PAIP1 are shown (see all 218 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 35)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 5 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs117387331,2
    C,F,H43595033(+) TAACAC/ACTGGG 1 -- ng314Minor allele frequency- A:0.01EU EA WA 420
    --
    rs125212491,2
    A,C43594386(+) TGTTTC/TAAGCA 3 -- ng310--------
    --
    rs133609021,2
    C43593162(+) GGCTGC/GAGGGG 3 -- ng31 int10--------
    --
    rs131894841,2
    A43593791(+) cagccA/Tgacca 3 -- ng310--------
    --
    rs98854811,2
    C43593163(+) GCTGGA/GGGGGA 3 -- ng31 int10--------
    --
    rs96323971,2
    C43562892(+) CCAGAA/CGAAGA 3 -- ut31 ese30--------
    rs45354591,2
    A,C,F,H43587339(+) ATAAAA/GTTGTG 3 -- int14Minor allele frequency- G:0.38EU EA WA 410
    rs68904191,2
    A,C,F,H43580349(+) TTCAAC/AAGTTT 3 -- int18Minor allele frequency- A:0.08EU EA WA 838
    rs109416401,2
    A,C,F,H43571715(+) AGCAGA/GACTTT 3 -- int14Minor allele frequency- G:0.49EU EA WA 414
    rs100585581,2
    A,C,F,H43575625(+) CCTACA/GAGGTA 3 -- int16Minor allele frequency- G:0.44EU EA WA NA 594
    About this table

    HapMap Linkage Disequilibrium images for PAIP1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 605184

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/19 PubMed articles for PAIP1 gene (see all 19 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 10605 HGNC: 16945 AceView: PAIP1 Ensembl:ENSG00000172239 euGenes: HUgn10605
    ECgene: PAIP1 H-InvDB: PAIP1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for PAIP1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for PAIP1 Antibodies for PAIP1
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for PAIP1 Browse small molecules at Sigma-Aldrich
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     Antibodies for PAIP1

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