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Aliases & Descriptions for PAIP1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases MGC12360 2 PAIP-1 3
Descriptions PABC1-interacting protein 1 2 PABP-interacting protein 1 3 Poly(A)-binding protein-interacting protein 1 3 poly(A) binding protein interacting protein 1 2 polyadenylate binding protein-interacting protein 1 2
Search outside databases for aliases for PAIP1 genePrevious GC identifers: GC05M043835 GC05M044703 GC05M043526 GC05M043571
Summaries for PAIP1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PAIP1 : The protein encoded by this gene interacts with poly(A)-binding protein and with the cap-bindingcomplex eIF4A. It is involved in translational initiation and protein biosynthesis. Overexpressionof this gene in COS7 cells stimulates translation. Alternative splicing occurs at this locus andthree transcript variants encoding three distinct isoforms have been identified. [provided byRefSeq] UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074 Function : Acts as a coactivator in the regulation of translation initiation of poly(A)-containingmRNAs. Its stimulatory activity on translation is mediated via its action on PABPC1. Competes withPAIP2 for binding to PABPC1. Its association with EIF4A and PABPC1 may potentiate contacts betweenmRNA termini. May also be involved in translationally coupled mRNA turnover. Implicated with otherRNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOSmRNA mediated by the major coding-region determinant of instability (mCRD) domain
Gene Wiki entry for PAIP1
Genomic Location for PAIP1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PAIP1 gene Entrez Gene cytogenetic band: 5p12 Ensembl cytogenetic band: 5p12 HGNC cytogenetic band: 5p12 PAIP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M043562:
(about GC identifiers )
Start:
43,562,126 bp from pter
End:
43,593,244 bp from pter
Size:
31,119 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000005.8 NT_006576.15 Proteins for PAIP1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074 (See
protein sequence )Recommended Name: Polyadenylate-binding protein-interacting protein 1 Size : 479 amino acids; 53525 Da
Subunit : Interacts with the RRM1-RRM2 and C-terminus regions of PABPC1 in a 1:1 stoichiometry.Interacts with EIF4A
Subcellular location : Cytoplasm (Probable)
PDB structures from and Proteopedia : 1JH4 (3D)
 
Secondary accessions : O60455 Q96B61 Q9BS63Alternative splicing : 2 isoforms : Q9H074-1 Q9H074-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_006442.2 NP_877590.1 NP_899152.1 ENSEMBL proteins: ENSP00000302768 ENSP00000370958 ENSP00000339622 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for PAIP1: Assays for PAIP1:
Protein
Domains/ Families for PAIP1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9H074 ProtoNet protein and cluster: Q9H074
1 Blocks protein family : IPB009818 Ataxin-2 UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074 Domain : Only the PABPC1-interacting motif-1 (PAM1) stimulates translation initiationSimilarity : Contains 1 MIF4G domain
Gene Function for PAIP1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Clones , and
Q-PCR Products
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_006451 Applied Biosystems Silencer ® siRNAs for PAIP1 Sigma-Aldrich siRNA for PAIP1 Sigma-Aldrich shRNA for PAIP1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_006451                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_006451                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_006451  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006451 UniProtKB/Swiss-Prot: PAIP1_HUMAN, Q9H074 Function : Acts as a coactivator in the regulation of translation initiation of poly(A)-containingmRNAs. Its stimulatory activity on translation is mediated via its action on PABPC1. Competes withPAIP2 for binding to PABPC1. Its association with EIF4A and PABPC1 may potentiate contacts betweenmRNA termini. May also be involved in translationally coupled mRNA turnover. Implicated with otherRNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay of the FOSmRNA mediated by the major coding-region determinant of instability (mCRD) domain
3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for PAIP1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for PAIP1 5/17 Interacting proteins for PAIP1 (ENSP00000302768 3 Q9H074 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 17
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for PAIP1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for PAIP1 1 Novoseek chemical compound relationship for PAIP1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pabc
95.98
3
11287632 (1), 14685257 (1)
About this table
Transcripts for PAIP1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_006451 Sigma-Aldrich siRNA for PAIP1 Sigma-Aldrich shRNA for PAIP1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_006451 NM_182789 NM_183323
REFSEQ mRNAs for PAIP1 gene (3 alternative transcripts): NM_006451.4 NM_182789.3 NM_183323.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006451 NM_182789 NM_183323
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_006451                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_006451                                  untagged cDNA clones in CMV expression vector (see all 5 ): NM_006451  
Additional cDNA sequence: AF013758.2 AK308270.1 AL136920.1 BC005295.1 BC015937.2 CR594937.1 CR599012.1 CR600281.1 CR601652.1 CR607203.1 CR609051.1 CR609577.1 CR611090.1 CR614417.1 CR617943.1 CR623640.1 CR624807.1 CR625180.1 CR626272.1 DQ786248.1 DQ786326.1
19 DOTS entries : DT.100812925 DT.316904 DT.92029035 DT.99986203 DT.100812933 DT.95075866 DT.92444677 DT.120862609 DT.102838137 DT.120862617 DT.95225834 DT.92444689 DT.95225879 DT.100000856 DT.100698936 DT.100715828 DT.100812923 DT.120862635 DT.95225854
24/270 AceView cDNA sequences (see all 270
):AL548163 CR625180 NM_006451 BQ217727 BM795272 CB114557 CR600281 CR611090 BX420716 CR594937 CB215025 AA367274 BM723289 CR609577 CR609051 CR623640 CD517438 BM928166 BM782103 CR601652 CR607203 CR624807 NM_182789 BM763148
highest scoring ESTs for PAIP1 :AF013758 BG719757 BG719787 CB148103 CB215025 AA043823 AA126598 AA209236 AA211941 AA367274
Unigene Cluster for PAIP1: Poly(A) binding protein interacting protein 1 Hs.482038 [show with all ESTs ] Unigene Representative Sequence: NM_006451 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000306846
ENST00000381546
ENST00000338972
Expression for PAIP1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PAIP1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PAIP1 1 / 2 / 3
11 probe-sets matching PAIP1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAACTTCAACSOURCE GeneReport for Unigene cluster: Hs.482038 Expression variation in blood from EXPOLDB for PAIP1
Orthologs for PAIP1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PAIP1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for PAIP1 ENSEMBL Gene Tree for PAIP1 Paralogs for PAIP1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for PAIP1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PAIP1 (up to first 250kb)
Disorders & Mutations for PAIP1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 605184
Medical News for PAIP1 (Possibly Related Articles in
Doctor's Guide )
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Publications for PAIP1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/19 PubMed articles for PAIP1 gene (see all 19
): Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166) 2, 3, 4 Wiemann S.... Poustka A. (2001) Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation. (PubMed id 9548260) 2, 3, 4 Craig A.W.B.... Sonenberg N. (1998) Paip1 interacts with poly(A) binding protein through two independent binding motifs. (PubMed id 11997512) 1, 3, 4 Roy G.... Sonenberg N. (2002) Translational repression by a novel partner of human poly(A) binding protein, Paip2. (PubMed id 11172725) 1, 3, 4 Khaleghpour K.... Sonenberg N. (2001) A mechanism for translationally coupled mRNA turnover: interaction between the poly(A) tail and a c-fos RNA coding determinant via a protein complex. (PubMed id 11051545) 1, 3, 4 Grosset C....Shyu A.-B. (2000) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Multiple portions of poly(A)-binding protein stimulate translation in vivo. (PubMed id 10970864) 3, 4 Gray N.K.... Wickens M. (2000) Poly(A)-binding protein-interacting protein 1 binds to eukaryotic translation initiation factor 3 to stimulate translation. (PubMed id 18725400) 1, 3 Martineau Y....Sonenberg N. (2008) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 3 Kimura K.... Sugano S. (2006) Lineage-specific gene duplication and loss in human and great ape evolution. (PubMed id 15252450) 3 Fortna A....Sikela J.M. (2004)
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Genome Databases showing PAIP1
(According to
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and/or
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Other Databases showing PAIP1
(According to HUGE )
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Specialized Databases showing PAIP1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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