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Aliases & Descriptions for PAH
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 1.14.16.1 3 | | PH 1, 2 | | PKU 2 | | PKU1 2, 5 | | Phe-4-monooxygenase 3 |
| | | Descriptions |
|---|
| phenylalanine hydroxylase 2 |
|
| | Search outside databases for aliases for PAH genePrevious GC identifers: GC12M102330 GC12M103190 GC12M101735 GC12M101736 |
Summaries for PAH(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for PAH: PAH encodes the enzyme phenylalanine hydroxylase that is the rate-limiting step in phenylalanine catabolism. Deficiency of this enzyme activity results in the autosomal recessive disorder phenylketonuria. [provided by RefSeq] Gene Wiki entry for PAH (Phenylalanine_hydroxylase) |
Genomic Location for PAH
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PAH gene 
Entrez Gene cytogenetic band: 12q22-q24.2 Ensembl cytogenetic band: 12q23.2 HGNC cytogenetic band: 12q22-q24.2PAH Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M101737:
(about GC identifiers)
Start:
|
101,756,234 bp from pter |
End:
|
101,835,511 bp from pter |
Size:
|
79,278 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000012.10 NT_019546.15
| Proteins for PAH
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PH4H_HUMAN, P00439 (See
protein sequence)Recommended Name: Phenylalanine-4-hydroxylase Size: 452 amino acids; 51862 Da
Cofactor: Fe(2+) ion
Subunit: Homodimer
PDB structures from and Proteopedia :1DMW (3D)
 1J8T (3D)
 1J8U (3D)
 1KW0 (3D)
 1LRM (3D)
 1MMK (3D)
 1MMT (3D)
 1PAH (3D)
 1TDW (3D)
 1TG2 (3D)
 2PAH (3D)
 3PAH (3D)
 4PAH (3D)
 5PAH (3D)
 6PAH (3D)
 
Secondary accessions: Q16717 Q8TC14Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000268.1
ENSEMBL proteins: ENSP00000303500
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
Antibodies for PAH: Assays for PAH: | Protein
Domains/ Families for PAH(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P00439
ProtoNet protein and cluster: P00439 2 Blocks protein families: IPB001273 Aromatic amino acid hydroxylase IPB002912 Amino acid-binding ACT
UniProtKB/Swiss-Prot: PH4H_HUMAN, P00439Similarity: Belongs to the biopterin-dependent aromatic amino acid hydroxylase familySimilarity: Contains 1 ACT domain | Gene Function for PAH
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000277
Applied Biosystems Silencer® siRNAs for PAH
Sigma-Aldrich siRNA and siRNA Panels for PAH  Sigma-Aldrich shRNA for PAH  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000277                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000277                                  untagged cDNA clone in CMV expression vector: NM_000277 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000277
UniProtKB/Swiss-Prot: PH4H_HUMAN, P00439Catalytic activity: L-phenylalanine + tetrahydrobiopterin + O(2) = L-tyrosine + 4a-hydroxytetrahydrobiopterinEnzyme regulation: N-terminal region of PAH is thought to contain allosteric binding sites for phenylalanine and to constitute an "inhibitory" domain that regulates the activity of a catalytic domain in the C-terminal portion of the moleculeEnzyme Number (IUBMB): EC 1.14.16.1 Genatlas biochemistry entry for PAH:phenylalanine hydroxylase,iron containing enzyme7 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Pah):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for PAH
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for PAH (Your Favorite Gene powered by Ingenuity) 
UniProtKB/Swiss-Prot: PH4H_HUMAN, P00439Pathway: Amino-acid degradation; L-phenylalanine degradation; acetoacetic acid and fumarate from L-phenylalanine: step 1/6 Gene Network CentralTM Interacting Genes and Proteins Network for PAH 
5/28 Interacting proteins for PAH (ENSP000003035003) via UniProtKB, MINT, and/or STRING (see all 28
)About this table
5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006559 | L-phenylalanine catabolic process |
IEA | -- | | GO:0006571 | tyrosine biosynthetic process |
IEA | -- | | GO:0008652 | amino acid biosynthetic process |
TAS | 3856322 | | GO:0009072 | aromatic amino acid family metabolic process |
IEA | -- | | GO:0018126 | protein amino acid hydroxylation |
IEA | -- | About this table
|
Drugs & Compounds for PAH(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for PAH 10/45 Novoseek chemical compound relationships for PAH gene (see all 45
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| phenylalanine |
97.27 |
1608 |
8573072 (8), 10964764 (6), 2302187 (6), 17884650 (5) (see all 99) |
| hpah |
94.60 |
17 |
10767175 (2), 12554741 (1), 8570624 (1), 11444803 (1) (see all 16) |
| 4a-hydroxytetrahydrobiopterin |
92.71 |
2 |
8352282 (1), 1988938 (1) |
| dihydropteridine |
88.05 |
7 |
2069475 (1), 1793349 (1), 8352282 (1), 12956422 (1) (see all 7) |
| pterin |
86.63 |
16 |
12459906 (2), 12603331 (2), 12696880 (2), 1359535 (1) (see all 11) |
| 7-biopterin |
85.42 |
2 |
1988938 (2) |
| tetrahydropterin |
83.06 |
2 |
1944771 (1), 14999516 (1) |
| dmph4 |
81.76 |
1 |
2062852 (1) |
| 6-methyltetrahydropterin |
81.31 |
4 |
1944771 (2), 15493924 (1) |
| 6-biopterin |
79.99 |
1 |
9204951 (1) |
About this table
|
Transcripts for PAH(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000277
Sigma-Aldrich siRNA and siRNA Panels for PAH  Sigma-Aldrich shRNA for PAH  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000277 REFSEQ mRNAs for PAH gene: NM_000277.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000277               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000277                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000277                                  untagged cDNA clone in CMV expression vector: NM_000277  Additional cDNA sequence: AK298419.1 AK313383.1 BC026251.1 CR599463.1 L47726.1 U49897.1 23 DOTS entries: DT.95349721 DT.416554 DT.95096800 DT.92456360 DT.100649727 DT.416557 DT.92456345 DT.92456368 DT.121179686 DT.416555 DT.450436 DT.91694235 DT.92040134 DT.95096812 DT.100792283 DT.121179705 DT.92456351 DT.121179746 DT.91993836 DT.92456354 DT.95091252 DT.91953679 DT.95223236 24/167 AceView cDNA sequences (see all 167
):AI076719 AA334497 CB157159 AA344539 CR599463 BE326688 AI474885 BG563015 BG617627 AV681930 BX496128 CB163800 CB164338 BG618056 AA344407 AL531676 BG567604 AV660089 BG618318 AI457856 BG401651 U49897 AI651059 AI474769
highest scoring ESTs for PAH:U49897 AA344407 AA344539 AV647584 AV647660 AV647682 AV647728 AV653234 AV654560 AV655816 Unigene Cluster for PAH: Phenylalanine hydroxylase Hs.643451 [show with all ESTs]Unigene Representative Sequence: NM_000277
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000307000
|
Expression for PAH
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PAH expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PAH
1 / 2 / 3 3 probe-sets matching PAH gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GACAGAATGT
SOURCE GeneReport for Unigene cluster: Hs.643451
Expression variation in blood from EXPOLDB for PAH |
Orthologs for PAH
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PAH gene from 5/12 species (see all 12
)
About this table Species with no ortholog for PAH
ENSEMBL Gene Tree for PAH | Paralogs for PAH(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PAH gene
- TPH12 TPH22 TH2
|
SNPs/Variants for PAH(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: PH4H_HUMAN, P00439Polymorphism: The Glu-274 variant occurs on approximately 4% of African-American PAH alleles. The enzyme activity of the variant protein is indistinguishable from that of the wild-type form
HapMap Linkage Disequilibrium images for PAH (up to first 250kb)
|
Disorders & Mutations for PAH
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 612349 disorders: 261600 261600 UniProtKB/Swiss-Prot: PH4H_HUMAN, P00439
Defects in PAH are the cause of phenylketonuria (PKU) [MIM:261600]. PKU is an autosomal recessive inborn error of phenylalanine metabolism, due to severe phenylalanine hydroxylase deficiency. It is characterized by blood concentrations of phenylalanine persistently above 1200 mumol (normal concentration 100 mumol) which usually causes mental retardation (unless low phenylalanine diet is introduced early in life). They tend to have light pigmentation, rashes similar to eczema, epilepsy, extreme hyperactivity, psychotic states and an unpleasant 'mousy' odor Defects in PAH are the cause of non-phenylketonuria hyperphenylalaninemia (Non-PKU HPA) [MIM:261600]. Non-PKU HPA is a mild form of phenylalanine hydroxylase deficiency characterized by phenylalanine levels persistently below 600 mumol, which allows normal intellectual and behavioral development without treatment. Non-PKU HPA is usually caused by the combined effect of a mild hyperphenylalaninemia mutation and a severe one Defects in PAH are the cause of hyperphenylalaninemia (HPA) [MIM:261600]. HPA is the mildest form of phenylalanine hydroxylase deficiency10/19 Novoseek disease relationships for PAH gene (see all 19
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| phenylketonurias |
98.27 |
415 |
18773304 (3), 11139255 (2), 1679030 (2), 8827369 (2) (see all 99) |
| hyperphenylalaninemia |
98.05 |
199 |
14601136 (3), 9380432 (2), 17517248 (2), 16527067 (2) (see all 99) |
| phenylketonuria classical |
94.24 |
38 |
9427141 (2), 2063869 (1), 7844888 (1), 7584088 (1) (see all 22) |
| phenylketonuria maternal |
77.87 |
5 |
10429004 (3), 14654659 (1) |
| metabolic disorder |
63.71 |
32 |
1968617 (1), 19172175 (1), 12777691 (1), 18985011 (1) (see all 20) |
| severe mental retardation |
59.55 |
5 |
7584088 (1), 10444341 (1), 8384712 (1), 16319947 (1) |
| mental retardation |
58.33 |
6 |
7628072 (1), 9950308 (1), 10924272 (1), 17637719 (1) |
| tyrosinemias |
46.00 |
1 |
11701644 (1) |
| vitiligo |
35.25 |
6 |
16935936 (3), 8204666 (1), 16143555 (1), 8128228 (1) |
| genetic disorder |
34.13 |
12 |
17221866 (1), 8100164 (1), 17968763 (1), 2309142 (1) (see all 6) |
About this table
Genatlas disease: PAH phenylketonuria,hyperphenylalaninemia GeneTests: PAH Phenylalanine Hydroxylase Deficiency Human Gene Mutation Database: PAH Genetic Association Database: PAH Human Genome Epidemiology Navigator: PAH (433 documents)
|
Medical News for PAH(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for PAH (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/525 PubMed articles for PAH gene (see all 525
):- Molecular analysis of phenylketonuria (PKU) in newborns from Texas. (PubMed id 11385716)1, 3, 4, 6 Yang Y.... Garcia-Heras J. (2001)
- Missense mutations in the N-terminal domain of human phenylalanine hydroxylase interfere with binding of regulatory phenylalanine. (PubMed id 11326337)1, 3, 4 Gjetting T.... Guettler F. (2001)
- Phenylalanine hydroxylase mutations and phenylalanine-tyrosine metabolism in heterozygotes for phenylalanine hydroxylase deficiency. (PubMed id 12200907)1, 3, 6 Verduci E....Giovannini M. (2002)
- Alterations in protein aggregation and degradation due to mild and severe missense mutations (A104D, R157N) in the human phenylalanine hydroxylase gene. (PubMed id 9792411)1, 3, 4 Waters P.J.... Scriver C.R. (1998)
- [Six novel mutations in PAH gene detected by sequencing] (PubMed id 15300621)1, 3, 6 Zhang Z....Xu J. (2004)
- Validation of PAH genotype-based predictions of metabolic phenylalanine hydroxylase deficiency phenotype: investigation of PKU/MHP patients from Lithuania. (PubMed id 12640344)1, 3, 6 Kasnauskiene J....Kucinskas V. (2003)
- A phenylalanine hydroxylase amino acid polymorphism with implications for molecular diagnostics. (PubMed id 11461196)1, 3, 4 Gjetting T.... Guettler F. (2001)
- Mutations of the phenylalanine hydroxylase (PAH) gene in Brazilian patients with phenylketonuria. (PubMed id 11180595)1, 3, 4 Acosta A.X.... Zago M.A. (2001)
- [Mutations in exon 7 of the phenylalanine hydroxylase (PAH) gene in chinese patients with phenylketonuria] (PubMed id 15730960)1, 3, 6 Song F....Zhang T. (2005)
- Impact of the phenylalanine hydroxylase gene on maternal phenylketonuria outcome. (PubMed id 14654659)1, 3, 6 Guttler F....Koch R. (2003)
|
Search for PAH
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PAH
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PAH
(According to HUGE)
About This Section
| -- |
Specialized Databases showing PAH(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| PAHdb | http://www.pahdb.mcgill.ca/ | | GeneReviews | http://www.genetests.org/query?gene=PAH | | Wikipedia | http://en.wikipedia.org/wiki/Phenylalanine_hydroxylase |
|
| | | About This Section
| --
| Services for PAH(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PAH:

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Incremental update: 13 Oct 2009
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