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PAG1 Gene

protein-coding   GIFtS: 51

GC08M082049
phosphoprotein associated with glycosphingolipid microdomains 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
CBP 1, 2, 3
FLJ37858 2
MGC138364 2
PAG 1, 2, 3
Descriptions
Csk-binding protein 2, 3
Transmembrane adapter protein PAG 3
Transmembrane phosphoprotein Cbp 3
phosphoprotein associated with glycosphingolipid
microdomains 1 2
phosphoprotein associated with glycosphingolipid-enriched
microdomains 2
External Ids
HGNC: 300431
Entrez Gene: 558242
UniProtKB: Q9NWQ83
Ensembl: ENSG000000766417
Search outside databases for aliases for PAG1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for PAG1:
The protein encoded by this gene is a type III transmembrane adaptor protein that binds to the
tyrosine kinase csk protein. It is thought to be involved in the regulation of T cell activation.
[provided by RefSeq]

UniProtKB/Swiss-Prot: PAG1_HUMAN, Q9NWQ8
Function: Negatively regulates TCR (T-cell antigen receptor)-mediated signaling in T-cells and
FCER1 (high affinity immunoglobulin epsilon receptor)-mediated signaling in mast cells. Promotes
CSK activation and recruitment to lipid rafts, which results in LCK inhibition. Inhibits
immunological synapse formation by preventing dynamic arrangement of lipid raft proteins. May be
involved in cell adhesion signaling

Gene Wiki entry for PAG1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the PAG1 gene  

Entrez Gene cytogenetic band: 8q21.13   Ensembl cytogenetic band:  8q21.13   HGNC cytogenetic band: 8q21.13

PAG1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M082049:     (about GC identifiers)

Start:
82,042,600 bp from pter
End:
82,186,858 bp from pter
Size:
144,259 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000008.9  NT_008183.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PAG1_HUMAN, Q9NWQ8 (See protein sequence)
Recommended Name: Phosphoprotein associated with glycosphingolipid-enriched microdomains 1  
Size: 432 amino acids; 46981 Da
Subunit: Interacts with FYN. When phosphorylated, interacts with CSK. Interacts with
SLC9A3R1/EBP50. In resting T-cells, part of a PAG1-SLC9A3R1-MSN complex which is disrupted upon
TCR activation
Subcellular location: Cell membrane; Single-pass type III membrane protein. Note=Present in lipid
rafts
Secondary accessions: Q2M1Z9 Q5BKU4 Q9NYK0

Post-translational modifications:

  • Palmitoylated1
  • Phosphorylated by FYN on Tyr-317 in resting T-cells; which promotes interaction with CSK.
    Dephosphorylated by PTPRC/CD45 upon TCR activation; which leads to CSK dissociation. May also be
    dephosphorylated by PTPN11. Hyperphosphorylated in mast cells upon FCER1 activation1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_060910.3  

    ENSEMBL proteins: 
    ENSP00000220597 


    Human Recombinant Proteins 
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    Browse Purified and Recombinant Proteins at Millipore
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    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (PAG)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886 plasma membrane IDA10790433
    GO:0016021 integral to membrane IEA--
    GO:0045121 membrane raft IDA10790433
    About this table

    Antibodies for PAG1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for PAG1
    R&D Systems Antibodies for PAG1
    Antibodies from Abcam (PAG), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (PAG1)
    Novus Biologicals Antibodies for PAG1

    Assays for PAG1: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q9NWQ8

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PAG1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018440

                  Applied Biosystems Silencer® siRNAs for PAG1

                  Sigma-Aldrich siRNA for PAG1  
                         Sigma-Aldrich shRNA Panels and shRNA for PAG1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_018440
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_018440
                                     untagged cDNA clones in CMV expression vector (see all 2): AK094546 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_018440

    UniProtKB/Swiss-Prot: PAG1_HUMAN, Q9NWQ8
    Function: Negatively regulates TCR (T-cell antigen receptor)-mediated signaling in T-cells and
    FCER1 (high affinity immunoglobulin epsilon receptor)-mediated signaling in mast cells. Promotes
    CSK activation and recruitment to lipid rafts, which results in LCK inhibition. Inhibits
    immunological synapse formation by preventing dynamic arrangement of lipid raft proteins. May be
    involved in cell adhesion signaling

    2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Pag1):

    hematopoietic systemimmune system

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005070 SH3/SH2 adaptor activity NAS10790433
    GO:0005515 protein binding IPI10790433
    GO:0042169 SH2 domain binding IDA10790433
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  PAG1  (Your Favorite Gene powered by Ingenuity) 
     B Cell Receptor Signaling
     T Cell Receptor Signaling

       GeneDecks  PAG1 for the pathways selected above  
    About GeneDecksing

     Gene Network CentralTM Interacting Genes and Proteins Network for  PAG1 


    5/36 Interacting proteins for PAG1 (ENSP000002205973 Q9NWQ82) via UniProtKB, MINT, and/or STRING (see all 36 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SLC9A3R1O147452MINT-19912 MINT-19913
    CSKENSP000002200033STRING (score=.985)
    SRCENSP000003626593STRING (score=.967)
    FYNENSP000003576563STRING (score=.964)
    LCKENSP000003282133STRING (score=.955)
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006955 immune response IEA--
    GO:0007242 intracellular signaling cascade IDA10790433
    GO:0050868 negative regulation of T cell activation IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for PAG1
    3 Novoseek chemical compound relationships for PAG1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tyrosine 65.29 8 10918051 (1), 17389760 (1), 1385560 (1), 15975665 (1) (see all 7)
    lipid 28.31 4 19298372 (1), 18491059 (1), 11390365 (1), 18498747 (1)
    cholesterol 0.00 1 1385560 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (PAG1)
    Browse for Gene Knock-down Tools from Millipore
    Browse Abnova for Chimera RNAi Products
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018440

                  Sigma-Aldrich siRNA for PAG1  
                         Sigma-Aldrich shRNA Panels and shRNA for PAG1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_018440  

    REFSEQ mRNAs for PAG1 gene: 

    NM_018440.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_018440  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_018440
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_018440
                                     untagged cDNA clones in CMV expression vector (see all 2): AK094546 

    Additional cDNA sequence: 

    AF240634.1 AK000680.1 AK095177.1 AK289818.1 BC090931.1 BC112159.1 

    9 DOTS entries:

    DT.444332  DT.40189891  DT.100667741  DT.100806130  DT.101957376  DT.95356468  DT.100750167  DT.91680522 
    DT.95257024 

    24/188 AceView cDNA sequences (see all 188 ):

    AK095177 AA827154 AA622656 AA534901 AA905390 AA766638 BX418077 AW293853 
    CB133978 F13471 BF196863 NM_018440 AI686375 BQ016094 AI810567 AA651793 
    F08578 BX498308 AA278678 AA732661 BG286642 AW511238 BM681407 AA602328 

    highest scoring ESTs for PAG1:

    AI809431 AI860212 AA045281 AA046562 AA220201 AA251143 AA278678 AA278686 AA281378 AA381289 

    Unigene Cluster for PAG1:

    Phosphoprotein associated with glycosphingolipid microdomains 1
    Hs.266175  [show with all ESTs]
    Unigene Representative Sequence: NM_018440


    GeneLoc Exon Structure

    1 Ensembl transcript including schematic representation:
    ENST00000220597  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    PAG1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for PAG1

    1 / 2 / 3

    13 probe-sets matching PAG1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    65068_at2, 3 U95-C 1 1.00 1.00 0.88 1.34 AI076356 0.60 1.00 0.82 1
    61485_at2, 3 U95-C 1 1.00 1.00 0.94 1.16 AI382057 0.60 1.00 0.82 1

    59941_at2, 3 U95-C 1 1.00 1.00 0.66 0.48 AI769545 0.60 1.00 0.82 1
    80912_at2, 3 U95-D 2 1.00 0.59 0.85 0.98 AI809431 0.80 1.00 0.91 1

    84044_at2, 3 U95-E 2 1.00 0.50 0.31 0.89 AL038841 0.60 1.00 0.82 1
    57670_at2, 3 U95-B 1 0.94 1.00 0.94 1.13 AI860212 0.80 1.00 0.91 1
    53988_at2, 3 U95-C 1 0.38 1.00 0.56 1.10 AA622656 0.60 1.00 0.82 1

    225626_at2, 3 U133-B 1 1.00 1.00 -- -- AK000680 0.60 1.00 0.82 1

    225622_at2, 3 U133-B 1 1.00 1.00 -- -- AI860212 0.80 1.00 0.91 1

    227354_at2, 3 U133-B 1 0.91 1.00 -- -- BF589359 0.40 1.00 0.76 1

    225626_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    225622_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    227354_at2 U133Plus2 1 0.91 1.00 -- -- -- -- -- -- --
    GeneDecks  PAG1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: TAAATAGCAG

    SOURCE GeneReport for Unigene cluster: Hs.266175

    UniProtKB/Swiss-Prot: PAG1_HUMAN, Q9NWQ8
    Tissue specificity: Ubiquitously expressed. Present in germinal center B-cells, plasma cells,
    T-cells, monocytes and platelets (at protein level)

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for PAG1 gene from 5/7 species (see all 7 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    PAG11   -- phosphoprotein associated with glycosphingolipid microdomains more 84.61(n)
    85.38(a)
    610895  XM_848462.1  XP_853555.1 
    chimpanzee
    (Pan troglodytes)
    PAG11   -- phosphoprotein associated with glycosphingolipid microdomains more 99.54(n)
    99.07(a)
    464253  XM_001168080.1  XP_001168080.1 
    cow
    (Bos taurus)
    PAG11   -- phosphoprotein associated with glycosphingolipid microdomains more 81.56(n)
    82.18(a)
    614460  XM_865981.1  XP_871074.1 
    mouse
    (Mus musculus)
    Pag11, 5 35
    phosphoprotein associated with glycosphingolipid microdomains more1, 5 80.16(n)1
    80.24(a)1
    942121  NM_053182.31  NP_444412.21 
     AF2501925  AI4628725  (see all 16)
    chicken
    (Gallus gallus)
    PAG11   -- phosphoprotein associated with glycosphingolipid microdomains more 68.49(n)
    64.19(a)
    420195  XM_418306.2  XP_418306.2 
    About this table        Species with no ortholog for PAG1

    ENSEMBL Gene Tree for PAG1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/739 NCBI SNPs in PAG1 are shown (see all 739 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 329)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 8 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs14455601,2
    A,C,F,H,O82047632(-) TAGTGC/TGATGA 1 -- ut3112Minor allele frequency- N:0.00EU EA WA NA 1052
    rs37393421,2
    A,C,F,H82045405(+) ACGGCA/GCTAAC 1 -- ut31 ese313Minor allele frequency- G:0.19EA EU WA 2748
    rs69843421,2
    A,C,F,H82046460(+) ACGCTT/CTTTAA 1 -- ut318Minor allele frequency- C:0.12EU EA WA 836
    --
    rs100888601,2
    A,C,F,H82043715(+) AAGTCT/CGAATT 1 -- ut31 ese34Minor allele frequency- C:0.20EU EA WA 412
    rs8952671,2
    A,C,F,H82068088(-) CAGCTC/TTCTGC 1 -- ut51 ese317Minor allele frequency- N:0.00EA NA EU WA 2918
    rs70179841,2
    A,C,F,H82049241(+) CTAATC/ACAAGG 1 -- ut31 ese34Minor allele frequency- A:0.14EU EA WA 418
    rs38163141,2
    A,C,F,H82049070(-) TTGTGA/CATGCT 1 -- ut31 ese34Minor allele frequency- C:0.21EU EA WA 412
    rs14455641,2
    A,C,F,H82044517(-) TTAGAG/ATGTAA 1 -- ut319Minor allele frequency- A:0.48MN EU EA WA 1022
    rs117431,2
    C,F,H82042651(-) ACTTAT/CCAAAT 1 -- ut3113Minor allele frequency- C:0.08MN EU EA WA 1442
    --
    rs127081121,2
    C,F,H82187424(+) ttgtgA/Ttgaga 1 -- ng314Minor allele frequency- T:0.19EU EA WA 420
    About this table

    HapMap Linkage Disequilibrium images for PAG1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 605767

    1 Novoseek disease relationship for PAG1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tumors 0.00 9 18538730 (2), 18498747 (2), 16636672 (1), 10343192 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/48 PubMed articles for PAG1 gene (see all 48 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 55824 HGNC: 30043 AceView: PAG Ensembl:ENSG00000076641 euGenes: HUgn55824
    ECgene: PAG1 H-InvDB: PAG1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

      --
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for PAG1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for PAG1 Antibodies for PAG1
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for PAG1 Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Antibodies for PAG1

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