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Aliases & Descriptions for PAEP
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases GD 1 , 2 , 3 GdA 1 , 2 GdF 1 , 2 GdS 1 , 2 MGC138509 1 , 2 MGC142288 1 , 2 OTTHUMP00000022548 2 OTTHUMP00000022549 2 OTTHUMP00000022550 2 PAEG 1 , 2 , 3 PEG 3 PEP 1 , 2 PP14 1 , 2 , 3 , 5 glycodelin 2 glycodelin-A 2 glycodelin-F 2 glycodelin-S 2
Descriptions PP14 protein (placental protein 14) 2 Placental protein 14 3 Pregnancy-associated endometrial alpha-2 globulin 3 Progesterone-associated endometrial protein 2 , 3 alpha uterine protein 2 pregnancy-associated endometrial alpha-2-globulin 2 progestagen-associated endometrial protein 2 , 3
Search outside databases for aliases for PAEP genePrevious GC identifers: GC09P129603 GC09P130225 GC09P131976 GC09P133892 GC09P135679
Summaries for PAEP (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PAEP : This gene is a member of the kernel lipocalin superfamily whose members share relatively lowsequence similarity but have highly conserved exon/intron structure and three-dimensional proteinfolding. Most lipocalins are clustered on the long arm of chromosome 9. The encoded glycoproteinhas been previously referred to as pregnancy-associated endometrial alpha-2-globulin, placentalprotein 14, and glycodelin, but has been officially named progestagen-associated endometrialprotein. Three distinct forms, with identical protein backbones but different glycosylationprofiles, are found in amniotic fluid, follicular fluid and seminal plasma of the reproductivesystem. These glycoproteins have distinct and essential roles in regulating a uterine environmentsuitable for pregnancy and in the timing and occurrence of the appropriate sequence of events inthe fertilization process. A number of alternatively spliced transcript variants have beenobserved at this locus, but the full-length nature of only two, each encoding the same protein,has been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: PAEP_HUMAN, P09466 Function : This protein is, quantitatively, the main protein synthesized and secreted in theendometrium from mid-luteal phase of the menstrual cycle and during the first semester ofpregnancy
Gene Wiki entry for PAEP
Genomic Location for PAEP
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PAEP gene Entrez Gene cytogenetic band: 9q34 Ensembl cytogenetic band: 9q34.3 HGNC cytogenetic band: 9q34 PAEP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P137594:
(about GC identifiers )
Start:
137,593,425 bp from pter
End:
137,598,622 bp from pter
Size:
5,198 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000009.10 NT_019501.13 Proteins for PAEP
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PAEP_HUMAN, P09466 (See
protein sequence )Recommended Name: Glycodelin precursor Size : 180 amino acids; 20624 Da
Subunit : Homodimer
Secondary accessions : Q5T6T1 Q9UG92Alternative splicing : 3 isoforms : P09466-1 P09466-2 P09466-3
Post-translational modifications:
At least two differentially glycosylated forms are found. Glycodelin-A (GdA) (amniotic fluid) withcontraceptive and immunosuppressive activities and glycodelin-S (Gds) (seminal plasma) whose roleis not yet known. The gender-specific glycosylation may serve to regulate key process involved inhuman reproduction1
REFSEQ proteins (2 alternative transcripts):
NP_001018059.1 NP_002562.2 ENSEMBL proteins: ENSP00000277508 ENSP00000360832 ENSP00000360833 ENSP00000360831 ENSP00000343572 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells Antibodies for PAEP: Assays for PAEP:
Protein
Domains/ Families for PAEP(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P09466 ProtoNet protein and cluster: P09466
2 Blocks protein families : IPB002345 Lipocalin signature IPB002447 Beta-lactoglobulin signature UniProtKB/Swiss-Prot: PAEP_HUMAN, P09466 Similarity : Belongs to the calycin superfamily. Lipocalin family
Gene Function for PAEP
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002571 Applied Biosystems Silencer ® siRNAs for PAEP Sigma-Aldrich siRNA for PAEP Sigma-Aldrich shRNA Panels and shRNA for PAEP Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018049                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018049                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001018049  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002571 UniProtKB/Swiss-Prot: PAEP_HUMAN, P09466 Function : This protein is, quantitatively, the main protein synthesized and secreted in theendometrium from mid-luteal phase of the menstrual cycle and during the first semester ofpregnancy
Genatlas biochemistry entry for PAEP :progestagen-associated endometrial protein (lipocalin family,Kernel group),mainly expressed by thesecretory glandular epithelium of the endometrium and decidua,also expressed by the placenta andby hematopoietic cells of the megakaryocytic lineage,present at high concentration in ammioticfluid,uterine luminal fluid,demonstrating potential immunosuppresive properties 2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005215 transporter activity
IEA -- GO:0005488 binding
IEA --
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Pathways & Interactions for PAEP
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for PAEP 5/24 Interacting proteins for PAEP (ENSP00000360833 3 P09466 2 ) via UniProtKB, MINT, and/or STRING (see all 24
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for PAEP (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for PAEP 10/19 Novoseek chemical compound relationships for PAEP gene (see all 19
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
pp-12
90.30
18
2318953 (6), 2298862 (3), 1840727 (2), 7694434 (1) (see all 6 )
lacdinac
80.54
4
7592613 (1), 15852231 (1), 16033064 (1), 17649829 (1)
progesterone
76.12
164
8498438 (6), 1730302 (4), 8288762 (4), 2380618 (3) (see all 62 )
pregnanediol
55.29
1
15222384 (1)
progestins
45.46
6
10764460 (2), 11299967 (1), 16622300 (1), 17339403 (1)
estradiol
45.37
5
17649829 (2), 1442957 (1), 9062493 (1), 1619035 (1)
estradiol valerate
35.29
1
1555688 (1)
steroid
33.82
17
7593493 (2), 12820358 (2), 17068141 (2), 17720699 (2) (see all 9 )
isocitrate
30.41
3
1400926 (1), 8497343 (1), 1532445 (1)
ribonucleic acid
21.97
2
9166287 (1), 16823513 (1)
About this table
Transcripts for PAEP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002571 Sigma-Aldrich siRNA for PAEP Sigma-Aldrich shRNA Panels and shRNA for PAEP Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001018049 NM_002571
REFSEQ mRNAs for PAEP gene (2 alternative transcripts): NM_001018049.1 NM_002571.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001018049 NM_002571
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018049                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001018049                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001018049  
Additional cDNA sequence: AK304657.1 AK309965.1 AK309983.1 AK311007.1 AK311730.1 AK311731.1 AK311813.1 BC069451.1 BC069562.1 BC112304.1 BC113728.1 CR598196.1 CR606504.1 DQ884407.1 J04129.1 M61886.1
11 DOTS entries : DT.102821925 DT.75103603 DT.100738506 DT.121162152 DT.86853781 DT.95156051 DT.121162144 DT.121162145 DT.121162157 DT.97777817 DT.40267411
24/93 AceView cDNA sequences (see all 93
):AA479874 CR598196 AA854990 AA477016 CB216464 CR606504 AI092114 BC069451 AA293479 AA433965 AL050169 CB216948 AI474212 AI865541 BQ216754 M61886 AI597661 BF589533 BC069562 BM978054 BF509153 AA478226 AA434011 AI420208
highest scoring ESTs for PAEP :J04129 AA235001 AA252967 AA291495 AA293088 AA293479 AA402723 AA402883 AA421247 AA421417
Unigene Cluster for PAEP: Progestagen-associated endometrial protein Hs.532325 [show with all ESTs ] Unigene Representative Sequence: AK311730 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for PAEP (see all 9
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d · 4e ^ 5a · 5b ^ 6 ^ 7a · 7b SP1 :       -         -   -       -   -   -   -           SP2 :       -   -       -   -   -   -   -   -   -             SP3 :       -         -   -   -                     SP4 :               -   -   -                     SP5 :       -         -   -                      
About this scheme ECgene alternative splicing isoforms for PAEP 5 Ensembl transcripts including schematic representations : ENST00000277508
ENST00000371767
ENST00000371768
ENST00000371766
ENST00000344007
Expression for PAEP
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PAEP expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PAEP 1 / 2 / 3
4 probe-sets matching PAEP gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.532325 Expression variation in blood from EXPOLDB for PAEP
Orthologs for PAEP
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PAEP gene from 2 species
Organism
Gene
Locus
Description
Human Similarity
NCBI accessions
chimpanzee (Pan troglodytes)
PAEP1
--
progestagen-associated endometrial protein
98.81(n) 97.86(a)
748128 XM_001159832.1 XP_001159832.1
mouse (Mus musculus)
Paep5
2 (73.00 cM)
progestagen-associated endometrial protein
--
-
About this table Species with no ortholog for PAEP ENSEMBL Gene Tree for PAEP Paralogs for PAEP (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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--
SNPs/Variants for PAEP (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PAEP (up to first 250kb)
Disorders & Mutations for PAEP
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 173310 10/37 Novoseek disease relationships for PAEP gene (see all 37
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
miscarriage recurrent
66.12
20
9853880 (5), 8567792 (4), 17049713 (2), 7890064 (2) (see all 5 )
infertility
53.06
15
8458460 (4), 16417092 (1), 8485609 (1), 9886514 (1) (see all 9 )
endometrial carcinoma
51.52
11
16123169 (2), 16325596 (2), 11369448 (2), 9804252 (2) (see all 6 )
endometriosis
49.62
18
1531465 (4), 8452641 (2), 10027629 (1), 16417092 (1) (see all 11 )
pregnancy ectopic
44.15
7
7947525 (3), 12781411 (2), 1551949 (1), 16055453 (1)
spontaneous abortion
42.47
11
17049713 (2), 8485609 (2), 1551949 (1), 7947525 (1) (see all 7 )
pregnancy tubal
37.13
1
7498715 (1)
endometrial cancer
34.73
2
16325596 (1), 17068141 (1)
hydatidiform mole
32.19
1
12820349 (1)
turners syndrome
31.79
4
2351706 (1), 7540180 (1), 8473472 (1), 1555688 (1)
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Medical News for PAEP (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PAEP (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/268 PubMed articles for PAEP gene (see all 268
): Glycodelin from seminal plasma is a differentially glycosylated form of contraceptive glycodelin-A. (PubMed id 9239694) 1, 3, 4 Koistinen H.... Seppala M. (1996) Purification and characterization of an immunomodulatory endometrial protein, glycodelin. (PubMed id 11278680) 1, 3, 4 Vigne J.-L.... Taylor R.N. (2001) Gender-specific glycosylation of human glycodelin affects its contraceptive activity. (PubMed id 8943270) 1, 3, 4 Morris H.R.... Clark G.F. (1996) The human placental protein 14 (PP14) gene is localized on chromosome 9q34. (PubMed id 2016092) 1, 2, 3 Van Cong N....Bernheim A. (1991) Structural analysis of the oligosaccharides derived from glycodelin, a human glycoprotein with potent immunosuppressive and contraceptive activities. (PubMed id 7592613) 1, 3, 4 Dell A.... Clark G.F. (1995) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 3, 4 Humphray S.J.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Multiple forms of mRNA encoding human pregnancy-associated endometrial alpha 2-globulin, a beta-lactoglobulin homologue. (PubMed id 2006183) 3, 4 Garde J.... Eperon I.C. (1991) Human placental protein 14 gene: sequence and characterization of a short duplication. (PubMed id 2206398) 3, 4 Vaisse C.... Milgrom E. (1990) Complete amino acid sequence of human placental protein 14: a progesterone-regulated uterine protein homologous to beta- lactoglobulins. (PubMed id 3194393) 3, 4 Julkunen M.... Janne O.A. (1988)
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Genome Databases showing PAEP
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PAEP
(According to HUGE )
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Specialized Databases showing PAEP (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PAEP (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for PAEP:
Search Tocris compounds for PAEP
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Aliases for PAEP
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Paralogs for PAEP
Pathways/Interactions for PAEP
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009