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Aliases for PADI2 Gene

Aliases for PADI2 Gene

  • Peptidyl Arginine Deiminase 2 2 3
  • Peptidyl Arginine Deiminase, Type II 2 3 5
  • Protein-Arginine Deiminase Type II 3 4
  • EC 3.5.3.15 4 63
  • PAD-H19 3 4
  • PAD2 3 4
  • PDI2 3 4
  • Peptidylarginine Deiminase II 4
  • KIAA0994 4

External Ids for PADI2 Gene

Previous GeneCards Identifiers for PADI2 Gene

  • GC01M017130
  • GC01M016434
  • GC01M016775
  • GC01M016776
  • GC01M017138
  • GC01M017265
  • GC01M017393
  • GC01M015637

Summaries for PADI2 Gene

Entrez Gene Summary for PADI2 Gene

  • This gene encodes a member of the peptidyl arginine deiminase family of enzymes, which catalyze the post-translational deimination of proteins by converting arginine residues into citrullines in the presence of calcium ions. The family members have distinct substrate specificities and tissue-specific expression patterns. The type II enzyme is the most widely expressed family member. Known substrates for this enzyme include myelin basic protein in the central nervous system and vimentin in skeletal muscle and macrophages. This enzyme is thought to play a role in the onset and progression of neurodegenerative human disorders, including Alzheimer disease and multiple sclerosis, and it has also been implicated in glaucoma pathogenesis. This gene exists in a cluster with four other paralogous genes. [provided by RefSeq, Jul 2008]

GeneCards Summary for PADI2 Gene

PADI2 (Peptidyl Arginine Deiminase 2) is a Protein Coding gene. Diseases associated with PADI2 include Alzheimer Disease. Among its related pathways are Chromatin organization. GO annotations related to this gene include calcium ion binding and protein-arginine deiminase activity. An important paralog of this gene is PADI3.

UniProtKB/Swiss-Prot for PADI2 Gene

  • Catalyzes the deimination of arginine residues of proteins.

Gene Wiki entry for PADI2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PADI2 Gene

Genomics for PADI2 Gene

Regulatory Elements for PADI2 Gene

Enhancers for PADI2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around PADI2 on UCSC Golden Path with GeneCards custom track

Promoters for PADI2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PADI2 on UCSC Golden Path with GeneCards custom track

Genomic Location for PADI2 Gene

Chromosome:
1
Start:
17,066,761 bp from pter
End:
17,119,453 bp from pter
Size:
52,693 bases
Orientation:
Minus strand

Genomic View for PADI2 Gene

Genes around PADI2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PADI2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PADI2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PADI2 Gene

Proteins for PADI2 Gene

  • Protein details for PADI2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y2J8-PADI2_HUMAN
    Recommended name:
    Protein-arginine deiminase type-2
    Protein Accession:
    Q9Y2J8
    Secondary Accessions:
    • Q96DA7
    • Q9UPN2

    Protein attributes for PADI2 Gene

    Size:
    665 amino acids
    Molecular mass:
    75564 Da
    Cofactor:
    Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA76838.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for PADI2 Gene

    Alternative splice isoforms for PADI2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PADI2 Gene

Proteomics data for PADI2 Gene at MOPED

Selected DME Specific Peptides for PADI2 Gene

Post-translational modifications for PADI2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PADI2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

Domains & Families for PADI2 Gene

Gene Families for PADI2 Gene

Protein Domains for PADI2 Gene

Suggested Antigen Peptide Sequences for PADI2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9Y2J8

UniProtKB/Swiss-Prot:

PADI2_HUMAN :
  • Belongs to the protein arginine deiminase family.
Family:
  • Belongs to the protein arginine deiminase family.
genes like me logo Genes that share domains with PADI2: view

Function for PADI2 Gene

Molecular function for PADI2 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
Protein L-arginine + H(2)O = protein L-citrulline + NH(3).
UniProtKB/Swiss-Prot Function:
Catalyzes the deimination of arginine residues of proteins.

Enzyme Numbers (IUBMB) for PADI2 Gene

Phenotypes for PADI2 Gene

genes like me logo Genes that share phenotypes with PADI2: view

Animal Models for PADI2 Gene

MGI Knock Outs for PADI2:

Animal Model Products

  • Taconic Biosciences Mouse Models for PADI2

No data available for Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PADI2 Gene

Localization for PADI2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PADI2 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PADI2 Gene COMPARTMENTS Subcellular localization image for PADI2 gene
Compartment Confidence
extracellular 5
mitochondrion 3
cytoskeleton 2
cytosol 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for PADI2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA,IDA 12392711
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with PADI2: view

Pathways & Interactions for PADI2 Gene

genes like me logo Genes that share pathways with PADI2: view

Pathways by source for PADI2 Gene

2 Reactome pathways for PADI2 Gene

Interacting Proteins for PADI2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000364635%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000364635 Q9Y2J8-PADI2_HUMAN for PADI2 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for PADI2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010848 regulation of chromatin disassembly IDA 22853951
GO:0018101 protein citrullination IEA,IDA 12392711
GO:0021762 substantia nigra development IEP 22926577
GO:0030520 intracellular estrogen receptor signaling pathway IMP 22853951
GO:0048096 chromatin-mediated maintenance of transcription IMP 22853951
genes like me logo Genes that share ontologies with PADI2: view

No data available for SIGNOR curated interactions for PADI2 Gene

Drugs & Compounds for PADI2 Gene

(3) Drugs for PADI2 Gene - From: DrugBank, DGIdb, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Citrulline Approved Nutra Full agonist, Agonist, Target 0
ADI-PEG 20 Pharma inhibitor 0
calcium Nutra 0

(2) Additional Compounds for PADI2 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Ammonia
  • Ammonia anhydrous
  • Ammonia inhalant
  • Ammonia solution strong [usan]
  • Ammonia water
  • Ammoniak
7664-41-7
Water
  • Dihydrogen oxide
  • Steam
7732-18-5
genes like me logo Genes that share compounds with PADI2: view

Transcripts for PADI2 Gene

Unigene Clusters for PADI2 Gene

Peptidyl arginine deiminase, type II:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PADI2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b
SP1: - - - - -
SP2: - - - -
SP3: -
SP4: -
SP5:

Relevant External Links for PADI2 Gene

GeneLoc Exon Structure for
PADI2
ECgene alternative splicing isoforms for
PADI2

Expression for PADI2 Gene

mRNA expression in normal human tissues for PADI2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PADI2 Gene

This gene is overexpressed in Muscle - Skeletal (x11.1), Whole Blood (x9.1), and Brain - Spinal cord (cervical c-1) (x7.6).

Protein differential expression in normal tissues from HIPED for PADI2 Gene

This gene is overexpressed in Spinal cord (35.2), Retina (6.5), and Frontal cortex (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for PADI2 Gene



SOURCE GeneReport for Unigene cluster for PADI2 Gene Hs.33455

genes like me logo Genes that share expression patterns with PADI2: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for PADI2 Gene

Orthologs for PADI2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for PADI2 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia PADI2 35
  • 91.48 (n)
  • 94.48 (a)
PADI2 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Padi2 35
  • 88.02 (n)
  • 93.23 (a)
Padi2 16
Padi2 36
  • 92 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia PADI2 35
  • 99.45 (n)
  • 100 (a)
PADI2 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Padi2 35
  • 88.37 (n)
  • 93.68 (a)
cow
(Bos Taurus)
Mammalia PADI2 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PADI2 36
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PADI2 36
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves PADI2 35
  • 70.44 (n)
  • 68.78 (a)
PADI2 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PADI2 36
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia padi2 35
  • 65.75 (n)
  • 61.83 (a)
African clawed frog
(Xenopus laevis)
Amphibia padi2-prov 35
zebrafish
(Danio rerio)
Actinopterygii padi2 35
  • 59.95 (n)
  • 56.32 (a)
sbcb968 35
padi2 36
  • 53 (a)
OneToMany
Species with no ortholog for PADI2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for PADI2 Gene

ENSEMBL:
Gene Tree for PADI2 (if available)
TreeFam:
Gene Tree for PADI2 (if available)

Paralogs for PADI2 Gene

Paralogs for PADI2 Gene

(4) SIMAP similar genes for PADI2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with PADI2: view

Variants for PADI2 Gene

Sequence variations from dbSNP and Humsavar for PADI2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs719262 -- 17,067,214(+) AAAAA(A/G)AAAAA utr-variant-3-prime
rs875218 -- 17,071,574(-) AGCCC(A/G)GGCCT intron-variant
rs875219 -- 17,071,571(-) CCAGG(C/G)CTGGA intron-variant
rs878269 -- 17,105,904(+) aacaa(C/G)cttcc intron-variant
rs878270 -- 17,105,993(+) AATTT(A/G)CTCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PADI2 Gene

Variant ID Type Subtype PubMed ID
dgv29e1 CNV Complex 17122850
nsv428421 CNV Gain+Loss 18775914
dgv40e1 CNV Complex 17122850
nsv834280 CNV Loss 17160897
esv2422314 CNV Duplication 17116639
nsv460662 CNV Loss 19166990
esv269737 CNV Insertion 20981092
esv274605 CNV Insertion 20981092

Variation tolerance for PADI2 Gene

Residual Variation Intolerance Score: 80.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.05; 50.47% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for PADI2 Gene

Disorders for PADI2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for PADI2 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
alzheimer disease
  • alzheimer disease, late-onset
- elite association - COSMIC cancer census association via MalaCards
Search PADI2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for PADI2

Genetic Association Database (GAD)
PADI2
Human Genome Epidemiology (HuGE) Navigator
PADI2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PADI2
genes like me logo Genes that share disorders with PADI2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for PADI2 Gene

Publications for PADI2 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48 67
  2. Regulation of the expression of peptidylarginine deiminase type II gene (PADI2) in human keratinocytes involves Sp1 and Sp3 transcription factors. (PMID: 15854045) Dong S. … Takahara H. (J. Invest. Dermatol. 2005) 23 25 26
  3. Comparison of enzymatic properties between hPADI2 and hPADI4. (PMID: 15629448) Nakayama-Hamada M. … Yamamoto K. (Biochem. Biophys. Res. Commun. 2005) 3 23
  4. Increased peptidylarginine deiminase type II in hypoxic astrocytes. (PMID: 15555572) Sambandam T. … Nicholas A.P. (Biochem. Biophys. Res. Commun. 2004) 3 23
  5. Isolation and characterization of cDNA clones encoding rat skeletal muscle peptidylarginine deiminase. (PMID: 2768262) Watanabe K. … Senshu T. (J. Biol. Chem. 1989) 2 3

Products for PADI2 Gene

Sources for PADI2 Gene

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