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Aliases & Descriptions for PACS2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases FLJ25488 2 KIAA0602 1 , 2 , 3 PACS-2 3 PACS1L 2 , 3
Descriptions PACS1-like protein 3 phosphofurin acidic cluster sorting protein 1-like 1 , 2 phosphofurin acidic cluster sorting protein 2 2
Search outside databases for aliases for PACS2 gene
Summaries for PACS2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: PACS2_HUMAN, Q86VP3 Function : Multifunctional sorting protein that controls the endoplasmic reticulum (ER)-mitochondriacommunication, including the apposition of mitochondria with the ER and ER homeostasis. Inaddition, in response to apoptic inducer, translocates BIB to mitochondria, which initiates asequence of events including the formation of mitochondrial truncated BID, the release ofcytochrome c, the activation of caspase-3 thereby causing cell death. May also be involved in ionchannel trafficking, directing acidic cluster-containing ion channels to distinct subcellularcompartments
Genomic Location for PACS2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PACS2 gene Entrez Gene cytogenetic band: 14q32.33 Ensembl cytogenetic band: 14q32.33 HGNC cytogenetic band: 14q32 PACS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14P104839:
(about GC identifiers )
Start:
104,852,126 bp from pter
End:
104,935,529 bp from pter
Size:
83,404 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for PACS2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PACS2_HUMAN, Q86VP3 (See
protein sequence )Recommended Name: Phosphofurin acidic cluster sorting protein 2 Size : 889 amino acids; 97702 Da
Subunit : Interacts with BID and PKD2
Subcellular location : Endoplasmic reticulum lumen. Mitochondrion
Secondary accessions : A2VDJ9 O60342 Q6P191 Q96FL7Alternative splicing : 3 isoforms : Q86VP3-1 Q86VP3-2 Q86VP3-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001094383.1 NP_056012.2 ENSEMBL proteins: ENSP00000321834 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005739 mitochondrion
IEA -- GO:0005783 endoplasmic reticulum
IEA -- GO:0005788 endoplasmic reticulum lumen
IEA --
About this table Antibodies for PACS2: Assays for PACS2:
Protein
Domains/ Families for PACS2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q86VP3 ProtoNet protein and cluster: Q86VP3
UniProtKB/Swiss-Prot: PACS2_HUMAN, Q86VP3 Similarity : Belongs to the PACS family
Gene Function for PACS2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): XM_290619 Applied Biosystems Silencer ® siRNAs for PACS2 Sigma-Aldrich siRNA for PACS2 Sigma-Aldrich shRNA for PACS2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001100913                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001100913                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC028418  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001100913 UniProtKB/Swiss-Prot: PACS2_HUMAN, Q86VP3 Function : Multifunctional sorting protein that controls the endoplasmic reticulum (ER)-mitochondriacommunication, including the apposition of mitochondria with the ER and ER homeostasis. Inaddition, in response to apoptic inducer, translocates BIB to mitochondria, which initiates asequence of events including the formation of mitochondrial truncated BID, the release ofcytochrome c, the activation of caspase-3 thereby causing cell death. May also be involved in ionchannel trafficking, directing acidic cluster-containing ion channels to distinct subcellularcompartments
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Pacs2) : Pathways & Interactions for PACS2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/7 Interacting proteins for PACS2 (ENSP00000321834 3 ) via UniProtKB, MINT, and/or STRING (see all 7
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006915 apoptosis
IEA --
About this table
Drugs & Compounds for PACS2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for PACS2
Transcripts for PACS2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): XM_290619 Sigma-Aldrich siRNA for PACS2 Sigma-Aldrich shRNA for PACS2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001100913 NM_015197
REFSEQ mRNAs for PACS2 gene (2 alternative transcripts): NM_001100913.1 NM_015197.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001100913 NM_015197
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001100913                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001100913                                  untagged cDNA clones in CMV expression vector (see all 3 ): BC028418  
Additional cDNA sequence: AB011174.1 AB072449.1 AK098354.1 AY320284.2 BC010663.1 BC028418.1 BC050351.1 BC065220.1 BC095493.1 BC131591.1 CR609884.1 CR619350.1
17 DOTS entries : DT.95340845 DT.75136750 DT.100784499 DT.100784498 DT.99931200 DT.104677 DT.91725829 DT.100028808 DT.75113716 DT.100737432 DT.100784500 DT.120730234 DT.40253424 DT.40314722 DT.91723664 DT.95173287 DT.91723668
24/183 AceView cDNA sequences (see all 183
):BI910927 BQ681025 BU541359 BQ877534 CA388842 BG165261 BQ100979 BM974520 CA488597 AW516912 CO246386 AI361320 AL079470 BQ669918 BM558228 BC010663 BM709620 Z45646 AB011174 BG392373 AI419333 AL044754 BM973747 BQ086326
highest scoring ESTs for PACS2 :AB011174 AA156660 AA159210 AA193428 AA193451 AA367168 AA454581 AA456475 AA558972 AA661639
Unigene Cluster for PACS2: Phosphofurin acidic cluster sorting protein 2 Hs.525626 [show with all ESTs ] Unigene Representative Sequence: NM_001100913 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for PACS2 (see all 10
) ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21a · SP1 :   -     -                 -                             -   SP2 :   -     -                 -             -               -   -   SP3 :                                                     SP4 :       -                                               SP5 :                                                    
ExUns: 21b · 21c · 21d ^ 22 ^ 23a · 23b · 23c ^ 24 ^ 25a · 25b ^ 26 ^ 27a · 27b · 27c · 27d SP1 : -         -   -   -                   SP2 : -         -   -   -                   SP3 :         -   -   -                   SP4 :                               SP5 :                              
About this scheme ECgene alternative splicing isoforms for PACS2 1 Ensembl transcript including schematic representation : ENST00000325438
Expression for PACS2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PACS2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PACS2 1 / 2 / 3
7 probe-sets matching PACS2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGGCCGCTCASOURCE GeneReport for Unigene cluster: Hs.525626 Expression variation in blood from EXPOLDB for PACS2
UniProtKB/Swiss-Prot: PACS2_HUMAN, Q86VP3 Tissue specificity : Broadly expressed, with greatest levels in skeletal muscle followed by heart,brain, pancreas and testis
Orthologs for PACS2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PACS2 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for PACS2 ENSEMBL Gene Tree for PACS2 Paralogs for PACS2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PACS2 gene PACS1 2
SNPs/Variants for PACS2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PACS2 (up to first 250kb)
Disorders & Mutations for PACS2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 610423
Medical News for PACS2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PACS2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10 PubMed articles for PACS2 gene :
Search for PACS2
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing PACS2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PACS2
(According to HUGE )
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Specialized Databases showing PACS2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PACS2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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