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Aliases & Descriptions for PACS1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ10209 1, 2 | | KIAA1175 1, 2, 3 | | PACS-1 3 |
| | | Descriptions |
|---|
| cytosolic sorting protein PACS-1 2 | | phosphofurin acidic cluster sorting protein 1 2 |
|
| | Search outside databases for aliases for PACS1 genePrevious GC identifers: GC11P067519 GC11P066088 GC11P065613 |
Summaries for PACS1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for PACS1: This gene encodes a protein with a putative role in the localization of trans-Golgi network (TGN) membrane proteins. Mouse and rat homologs have been identified and studies of the homologous rat protein indicate a role in directing TGN localization of furin by binding to the protease's phosphorylated cytosolic domain. In addition, the human protein plays a role in HIV-1 Nef-mediated downregulation of cell surface MHC-I molecules to the TGN, thereby enabling HIV-1 to escape immune surveillance. [provided by RefSeq] UniProtKB/Swiss-Prot: PACS1_HUMAN, Q6VY07Function: Coat protein that is involved in the localization of trans-Golgi network (TGN) membrane proteins that contain acidic cluster sorting motifs. Controls the endosome-to-Golgi trafficking of furin and mannose-6-phosphate receptor by connecting the acidic-cluster-containing cytoplasmic domain of these molecules with the adapter-protein complex-1 (AP-1) of endosomal clathrin-coated membrane pits. Involved in HIV-1 nef-mediated removal of MHC-I from the cell surface to the TGNGene Wiki entry for PACS1 |
Genomic Location for PACS1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the PACS1 gene 
Entrez Gene cytogenetic band: 11q13.1 Ensembl cytogenetic band: 11q13.1 HGNC cytogenetic band: 11q13.1-q13.2PACS1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P065595:
(about GC identifiers)
Start:
|
65,594,400 bp from pter |
End:
|
65,768,789 bp from pter |
Size:
|
174,390 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000011.8 NT_033903.7
| Proteins for PACS1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: PACS1_HUMAN, Q6VY07 (See
protein sequence)Recommended Name: Phosphofurin acidic cluster sorting protein 1 Size: 963 amino acids; 104898 Da
Subunit: Interacts with HIV-1 Nef, AP-1 and AP-3 but not with AP-2. Forms a ternary complex with furin and AP-1. Combines with Nef to usurp the ARF6 endocytic pathway by a PI3K-dependent process to remove cell surface MHC-I molecules
Subcellular location: Golgi apparatus, trans-Golgi network (By similarity). Note=Localizes in the perinuclear region, probably the TGN (By similarity)
Secondary accessions: Q6PJY6 Q6PKB6 Q7Z590 Q7Z5W4 Q8N8K6 Q96MW0 Q9NW92 Q9ULP5Alternative splicing: 2 isoforms: Q6VY07-1 Q6VY07-2 Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_060496.2
ENSEMBL proteins: ENSP00000316454
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for PACS1: Assays for PACS1: | Protein
Domains/ Families for PACS1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q6VY07
ProtoNet protein and cluster: Q6VY07 UniProtKB/Swiss-Prot: PACS1_HUMAN, Q6VY07Similarity: Belongs to the PACS family | Gene Function for PACS1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018026
Applied Biosystems Silencer® siRNAs for PACS1
Sigma-Aldrich siRNA for PACS1  Sigma-Aldrich shRNA for PACS1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_018026                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_018026                                  untagged cDNA clones in CMV expression vector (see all 2): NM_018026 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_018026
UniProtKB/Swiss-Prot: PACS1_HUMAN, Q6VY07Function: Coat protein that is involved in the localization of trans-Golgi network (TGN) membrane proteins that contain acidic cluster sorting motifs. Controls the endosome-to-Golgi trafficking of furin and mannose-6-phosphate receptor by connecting the acidic-cluster-containing cytoplasmic domain of these molecules with the adapter-protein complex-1 (AP-1) of endosomal clathrin-coated membrane pits. Involved in HIV-1 nef-mediated removal of MHC-I from the cell surface to the TGN1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for PACS1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for PACS1 
5/19 Interacting proteins for PACS1 (ENSP000003164543 Q6VY072) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000042 | protein targeting to Golgi |
IEA | -- | | GO:0044419 | interspecies interaction between organisms |
IEA | -- | About this table
|
Drugs & Compounds for PACS1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for PACS1
|
Transcripts for PACS1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018026
Sigma-Aldrich siRNA for PACS1  Sigma-Aldrich shRNA for PACS1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_018026 REFSEQ mRNAs for PACS1 gene: NM_018026.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_018026               OriGene GFP tagged cDNA clone in CMV expression vector: NM_018026                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_018026                                  untagged cDNA clones in CMV expression vector (see all 2): NM_018026  Additional cDNA sequence: AB033001.1 AK001071.1 AK056361.1 AK096644.1 AK293966.1 AL137271.1 AY320283.1 BC003173.1 BC009936.1 BC010096.1 BC042909.1 BC052577.1 BC055288.1 CR608717.1 CR617326.1 22 DOTS entries: DT.100806911 DT.317672 DT.95364091 DT.100650493 DT.100816207 DT.91700233 DT.120693861 DT.100697231 DT.100816203 DT.100816205 DT.439237 DT.75170033 DT.91980868 DT.100816202 DT.101971580 DT.120693960 DT.91979774 DT.95206307 DT.100816199 DT.100816200 DT.91821416 DT.95364094 24/367 AceView cDNA sequences (see all 367
):CN483113 BQ932365 AI298911 BU685782 BC052577 BQ772654 BU956895 CR617326 BQ670055 BF371511 AI052087 BQ052853 BM931039 NM_018026 T33490 Z40056 BM695954 AK056361 BU956502 AI590037 BM747618 BI335899 AA381307 BC042909
highest scoring ESTs for PACS1:AA401796 AA040331 AA160898 AA253478 AA284913 AA284962 AA285084 AA285120 AA311047 AA405719 Unigene Cluster for PACS1: Phosphofurin acidic cluster sorting protein 1 Hs.644326 [show with all ESTs]Unigene Representative Sequence: NM_018026
GeneLoc Exon Structure
5/6 Alternative Splicing Database (ASD) splice patterns (SP) for PACS1 (see all 6
)
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16a | · | 16b | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20a | · | 20b | ^ | 21 | ^ | 22a | · | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 22b | · | 22c | · | 22d | ^ | 23 | ^ | 24a | · | 24b | |
| SP1: | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for PACS1
1 Ensembl transcript including schematic representation: ENST00000320580
|
Expression for PACS1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| PACS1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for PACS1
1 / 2 / 3 5 probe-sets matching PACS1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTGTCTGTGG
SOURCE GeneReport for Unigene cluster: Hs.644326
|
Orthologs for PACS1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for PACS1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for PACS1
ENSEMBL Gene Tree for PACS1 | Paralogs for PACS1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for PACS1 gene
- PACS22
|
SNPs/Variants for PACS1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for PACS1 (up to first 250kb)
|
Disorders & Mutations for PACS1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 607492
|
Medical News for PACS1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for PACS1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/27 PubMed articles for PACS1 gene (see all 27
):- AP-1 recruitment to VAMP4 is modulated by phosphorylation-dependent binding of PACS-1. (PubMed id 14608369)1, 2, 3 Hinners I....Tooze S.A. (2003)
- HIV-1 Nef protein binds to the cellular protein PACS-1 to downregulate class I major histocompatibility complexes. (PubMed id 10707087)1, 3, 4 Piguet V....Trono D. (2000)
- Signaling but not trafficking function of HIV-1 protein Nef is essential for Nef-induced defects in human intrathymic T-cell development. (PubMed id 12855553)1, 2, 3 Stove V....Verhasselt B. (2003)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- HIV-1 Nef downregulates MHC-I by a PACS-1- and PI3K-regulated ARF6 endocytic pathway. (PubMed id 12526811)3, 4 Blagoveshchenskaya A.D....Thomas G. (2002)
- PACS-1 binding to adaptors is required for acidic cluster motif- mediated protein traffic. (PubMed id 11331585)3, 4 Crump C.M....Thomas G. (2001)
- Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PubMed id 10574461)3, 4 Hirosawa M....Ohara O. (1999)
- A PACS-1, GGA3 and CK2 complex regulates CI-MPR trafficking. (PubMed id 16977309)1, 3 Scott G.K....Thomas G. (2006)
|
Search for PACS1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing PACS1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing PACS1
(According to HUGE)
About This Section
| |
Specialized Databases showing PACS1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for PACS1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for PACS1:

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Incremental update: 13 Oct 2009
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