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Aliases for PACRGL Gene

Aliases for PACRGL Gene

  • PARK2 Co-Regulated-Like 2 3
  • C4orf28 3 4
  • Chromosome 4 Open Reading Frame 28 2
  • PACRG-Like Protein 3

External Ids for PACRGL Gene

Previous HGNC Symbols for PACRGL Gene

  • C4orf28

Previous GeneCards Identifiers for PACRGL Gene

  • GC04P020311
  • GC04P020050

Summaries for PACRGL Gene

GeneCards Summary for PACRGL Gene

PACRGL (PARK2 Co-Regulated-Like) is a Protein Coding gene. An important paralog of this gene is PACRG.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PACRGL Gene

Genomics for PACRGL Gene

Regulatory Elements for PACRGL Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for PACRGL Gene

20,696,282 bp from pter
20,752,907 bp from pter
56,626 bases
Plus strand

Genomic View for PACRGL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PACRGL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PACRGL Gene

Proteins for PACRGL Gene

  • Protein details for PACRGL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    PACRG-like protein
    Protein Accession:
    Secondary Accessions:
    • B2RDB9
    • B4DFF8
    • B4DMN7
    • Q8TBA8

    Protein attributes for PACRGL Gene

    248 amino acids
    Molecular mass:
    27152 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PACRGL Gene


neXtProt entry for PACRGL Gene

Proteomics data for PACRGL Gene at MOPED

Post-translational modifications for PACRGL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for PACRGL Gene

Domains for PACRGL Gene

Protein Domains for PACRGL Gene

Suggested Antigen Peptide Sequences for PACRGL Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with PACRGL: view

No data available for Gene Families and UniProtKB/Swiss-Prot for PACRGL Gene

Function for PACRGL Gene

Gene Ontology (GO) - Molecular Function for PACRGL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005488 binding --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with PACRGL: view

Animal Model Products

CRISPR Products

miRNA for PACRGL Gene

miRTarBase miRNAs that target PACRGL

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PACRGL

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for PACRGL Gene

Localization for PACRGL Gene

Subcellular locations from

Jensen Localization Image for PACRGL Gene COMPARTMENTS Subcellular localization image for PACRGL gene
Compartment Confidence
cytosol 2
nucleus 2
cytoskeleton 1
extracellular 1
mitochondrion 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for PACRGL Gene

Pathways for PACRGL Gene

SuperPathways for PACRGL Gene

No Data Available

Gene Ontology (GO) - Biological Process for PACRGL Gene


No data available for Pathways by source for PACRGL Gene

Transcripts for PACRGL Gene

Unigene Clusters for PACRGL Gene

PARK2 co-regulated-like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for PACRGL

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PACRGL Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11
SP1: - - -
SP2: - -
SP3: -

Relevant External Links for PACRGL Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for PACRGL Gene

mRNA expression in normal human tissues for PACRGL Gene

Protein differential expression in normal tissues for PACRGL Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PACRGL Gene

SOURCE GeneReport for Unigene cluster for PACRGL Gene Hs.479298

genes like me logo Genes that share expressions with PACRGL: view

Expression partners for PACRGL Gene

* - Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PACRGL Gene

Orthologs for PACRGL Gene

This gene was present in the common ancestor of animals.

Orthologs for PACRGL Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia PACRGL 35
  • 88.44 (n)
  • 89.11 (a)
  • 89 (a)
(Canis familiaris)
Mammalia PACRGL 35
  • 87.07 (n)
  • 88.57 (a)
  • 79 (a)
(Mus musculus)
Mammalia Pacrgl 35
  • 84.54 (n)
  • 88.71 (a)
Pacrgl 16
Pacrgl 36
  • 89 (a)
(Pan troglodytes)
Mammalia PACRGL 35
  • 99.6 (n)
  • 98.79 (a)
  • 99 (a)
(Rattus norvegicus)
Mammalia Pacrgl 35
  • 84.96 (n)
  • 89.02 (a)
(Monodelphis domestica)
Mammalia PACRGL 36
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia PACRGL 36
  • 74 (a)
(Gallus gallus)
Aves PACRGL 35
  • 74.96 (n)
  • 74.24 (a)
  • 56 (a)
(Anolis carolinensis)
Reptilia PACRGL 36
  • 66 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia pacrgl 35
  • 66.67 (n)
  • 68 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.8047 35
fruit fly
(Drosophila melanogaster)
Insecta CG17349 36
  • 19 (a)
(Caenorhabditis elegans)
Secernentea E04F6.2 36
  • 19 (a)
Species with no ortholog for PACRGL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for PACRGL Gene

Gene Tree for PACRGL (if available)
Gene Tree for PACRGL (if available)

Paralogs for PACRGL Gene

Paralogs for PACRGL Gene Pseudogenes for PACRGL Gene

genes like me logo Genes that share paralogs with PACRGL: view

Variants for PACRGL Gene

Sequence variations from dbSNP and Humsavar for PACRGL Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs138774689 -- 20,704,519(+) GTTGA(A/C)AAACA reference, missense, nc-transcript-variant
rs138679646 -- 20,709,137(+) TTCGT(C/G)TCAAA intron-variant
rs138619472 -- 20,697,731(+) ACATC(A/G)AAGTA upstream-variant-2KB, intron-variant
rs138566013 -- 20,702,958(+) CAAGC(G/T)TACAT intron-variant
rs138316318 -- 20,713,920(+) CAACT(A/G)TGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for PACRGL Gene

Variant ID Type Subtype PubMed ID
nsv829876 CNV Gain 17160897

Relevant External Links for PACRGL Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PACRGL Gene

Disorders for PACRGL Gene

No disorders were found for PACRGL Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for PACRGL Gene

Publications for PACRGL Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4
  5. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3

Products for PACRGL Gene

Sources for PACRGL Gene

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