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Aliases for PABPN1L Gene

Aliases for PABPN1L Gene

  • Poly(A) Binding Protein Nuclear 1 Like, Cytoplasmic 2 3 5
  • Embryonic Poly(A)-Binding Protein Type II 3 4
  • Poly(A)-Binding Protein Nuclear-Like 1 3 4
  • Embryonic Poly(A)-Binding Protein 2 3 4
  • PABPNL1 3 4
  • EPABP-2 3 4
  • EPABP2 3 4
  • Poly(A) Binding Protein Nuclear 1 Like (Cytoplasmic) 2
  • Embryonic Polyadenylate-Binding Protein 2 3
  • Embryonic Poly(A) Binding Protein 2 2

External Ids for PABPN1L Gene

Previous GeneCards Identifiers for PABPN1L Gene

  • GC16M087456
  • GC16M088928
  • GC16M074625

Summaries for PABPN1L Gene

GeneCards Summary for PABPN1L Gene

PABPN1L (Poly(A) Binding Protein Nuclear 1 Like, Cytoplasmic) is a Protein Coding gene. Among its related pathways are Influenza A and mRNA surveillance pathway. GO annotations related to this gene include nucleic acid binding and nucleotide binding. An important paralog of this gene is PABPN1.

UniProtKB/Swiss-Prot for PABPN1L Gene

  • Binds the poly(A) tail of mRNA.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PABPN1L Gene

Genomics for PABPN1L Gene

Regulatory Elements for PABPN1L Gene

Enhancers for PABPN1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F088920 1.7 FANTOM5 Ensembl ENCODE 12.8 -54.5 -54493 9.3 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF766 TRAPPC2L CBFA2T3 PABPN1L GALNS LOC100289580 SNORD68 LOC100129697 APRT CDK10 LOC105371409
GH16F088967 1.4 FANTOM5 ENCODE 14.3 -103.3 -103333 12.4 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A YBX1 ZNF766 ZNF143 LOC100289580 PABPN1L LOC100129697 LOC339059 SNORD68 APRT RPL13 ZNF778 LOC101927863 ENSG00000268218
GH16F089171 1.2 ENCODE 11.3 -303.8 -303752 4.8 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CDH15 ENSG00000259877 ENSG00000261692 RNU6-430P ENSG00000259006 AFG3L1P ZNF778 LOC101927863 ENSG00000268218 PABPN1L
GH16F088956 1.1 Ensembl ENCODE 11.7 -87.4 -87445 3.2 HDGF ZNF133 PLRG1 ZNF207 YY2 ZNF645 ZNF592 ZFP41 SP1 ZSCAN16 ENSG00000259877 ENSG00000261692 RNU6-430P ENSG00000259006 CTU2 TRAPPC2L PABPN1L LOC100289580 LOC101927863 CBFA2T3
GH16F088753 1.1 Ensembl ENCODE 11.5 +115.3 115282 3.5 CTCF KLF1 ARID4B SIN3A ZBTB40 RAD21 ZNF121 ZNF335 E2F1 ZFHX2 PIEZO1 MIR4722 PABPN1L CDK10 SNAI3-AS1 RNF166 GALNS LOC339059
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around PABPN1L on UCSC Golden Path with GeneCards custom track

Genomic Location for PABPN1L Gene

Chromosome:
16
Start:
88,862,623 bp from pter
End:
88,870,156 bp from pter
Size:
7,534 bases
Orientation:
Minus strand

Genomic View for PABPN1L Gene

Genes around PABPN1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PABPN1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PABPN1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PABPN1L Gene

Proteins for PABPN1L Gene

  • Protein details for PABPN1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NDY0-EPAB2_HUMAN
    Recommended name:
    Embryonic polyadenylate-binding protein 2
    Protein Accession:
    A6NDY0
    Secondary Accessions:
    • A1L3B3
    • A2VDI2

    Protein attributes for PABPN1L Gene

    Size:
    278 amino acids
    Molecular mass:
    30386 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for PABPN1L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for PABPN1L Gene

Post-translational modifications for PABPN1L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PABPN1L Gene

No data available for DME Specific Peptides for PABPN1L Gene

Domains & Families for PABPN1L Gene

Gene Families for PABPN1L Gene

Protein Domains for PABPN1L Gene

Suggested Antigen Peptide Sequences for PABPN1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NDY0

UniProtKB/Swiss-Prot:

EPAB2_HUMAN :
  • Contains 1 RRM (RNA recognition motif) domain.
Domain:
  • Contains 1 RRM (RNA recognition motif) domain.
genes like me logo Genes that share domains with PABPN1L: view

Function for PABPN1L Gene

Molecular function for PABPN1L Gene

UniProtKB/Swiss-Prot Function:
Binds the poly(A) tail of mRNA.

Gene Ontology (GO) - Molecular Function for PABPN1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA --
genes like me logo Genes that share ontologies with PABPN1L: view

Phenotypes for PABPN1L Gene

MGI mutant phenotypes for PABPN1L:
inferred from 1 alleles
GenomeRNAi human phenotypes for PABPN1L:
genes like me logo Genes that share phenotypes with PABPN1L: view

Animal Models for PABPN1L Gene

MGI Knock Outs for PABPN1L:

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for PABPN1L Gene

Localization for PABPN1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for PABPN1L Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for PABPN1L gene
Compartment Confidence
nucleus 3
cytosol 1

Gene Ontology (GO) - Cellular Components for PABPN1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with PABPN1L: view

Pathways & Interactions for PABPN1L Gene

genes like me logo Genes that share pathways with PABPN1L: view

Pathways by source for PABPN1L Gene

2 KEGG pathways for PABPN1L Gene

Gene Ontology (GO) - Biological Process for PABPN1L Gene

None

No data available for SIGNOR curated interactions for PABPN1L Gene

Transcripts for PABPN1L Gene

mRNA/cDNA for PABPN1L Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PABPN1L Gene

Poly(A) binding protein, nuclear 1-like (cytoplasmic):
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for PABPN1L Gene

No ASD Table

Relevant External Links for PABPN1L Gene

GeneLoc Exon Structure for
PABPN1L
ECgene alternative splicing isoforms for
PABPN1L

Expression for PABPN1L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for PABPN1L Gene

mRNA differential expression in normal tissues according to GTEx for PABPN1L Gene

This gene is overexpressed in Brain - Cerebellum (x8.5), Brain - Cerebellar Hemisphere (x6.5), and Adrenal Gland (x5.6).

Protein differential expression in normal tissues from HIPED for PABPN1L Gene

This gene is overexpressed in Liver (35.7) and Urine (33.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for PABPN1L Gene



Protein tissue co-expression partners for PABPN1L Gene

NURSA nuclear receptor signaling pathways regulating expression of PABPN1L Gene:

PABPN1L

SOURCE GeneReport for Unigene cluster for PABPN1L Gene:

Hs.730522

mRNA Expression by UniProt/SwissProt for PABPN1L Gene:

A6NDY0-EPAB2_HUMAN
Tissue specificity: Expressed in various adult tissues.
genes like me logo Genes that share expression patterns with PABPN1L: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for PABPN1L Gene

Orthologs for PABPN1L Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PABPN1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PABPN1L 34 35
  • 99 (n)
cow
(Bos Taurus)
Mammalia PABPN1L 34 35
  • 82.21 (n)
rat
(Rattus norvegicus)
Mammalia Pabpn1l 34
  • 75.5 (n)
mouse
(Mus musculus)
Mammalia Pabpn1l 34 16 35
  • 73.41 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia PABPN1L 35
  • 55 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia PABPN1L 35
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves PABPN1L 35
  • 47 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia PABPN1L 35
  • 60 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii pabpn1l 35
  • 42 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Pabp2 35
  • 40 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea pabp-2 35
  • 42 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SGN1 35
  • 19 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1647 35
  • 45 (a)
OneToMany
Species where no ortholog for PABPN1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for PABPN1L Gene

ENSEMBL:
Gene Tree for PABPN1L (if available)
TreeFam:
Gene Tree for PABPN1L (if available)

Paralogs for PABPN1L Gene

Paralogs for PABPN1L Gene

(1) SIMAP similar genes for PABPN1L Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with PABPN1L: view

Variants for PABPN1L Gene

Sequence variations from dbSNP and Humsavar for PABPN1L Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs10711302 -- 88,864,084(+) AAGCG(-/C)CCCCC intron-variant
rs111777514 -- 88,865,426(+) TGTTT(A/C)CTCAA intron-variant
rs112104006 -- 88,870,775(+) AGGCA(C/G)GGAGG upstream-variant-2KB
rs112259025 -- 88,863,576(+) TCTGG(A/G)CCACC utr-variant-3-prime
rs112523142 -- 88,870,427(+) GTCCC(A/C)TGTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for PABPN1L Gene

Variant ID Type Subtype PubMed ID
nsv952071 CNV deletion 24416366
nsv573674 CNV gain 21841781
nsv521217 CNV loss 19592680
nsv482951 CNV loss 15286789
nsv471115 CNV loss 18288195
nsv1928 CNV insertion 18451855
nsv1063024 CNV gain 25217958
nsv1061256 CNV gain 25217958
esv3639561 CNV gain 21293372
esv3639555 CNV gain 21293372
esv2715066 CNV deletion 23290073
esv2715064 CNV deletion 23290073
dgv37n68 CNV loss 17160897
dgv3065n100 CNV gain 25217958

Variation tolerance for PABPN1L Gene

Gene Damage Index Score: 3.20; 52.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PABPN1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
PABPN1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PABPN1L Gene

Disorders for PABPN1L Gene

Relevant External Links for PABPN1L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PABPN1L

No disorders were found for PABPN1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PABPN1L Gene

Publications for PABPN1L Gene

  1. Isolation of the human ePAB and ePABP2 cDNAs and analysis of the expression patterns. (PMID: 18483763) Sakugawa N. … Sengoku K. (J. Assist. Reprod. Genet. 2008) 2 3 4 64
  2. Xenopus embryonic poly(A) binding protein 2 (ePABP2) defines a new family of cytoplasmic poly(A) binding proteins expressed during the early stages of vertebrate development. (PMID: 15083517) Good P.J. … Sheets M.D. (Genesis 2004) 3 64
  3. Identification of a novel Xenopus laevis poly (A) binding protein. (PMID: 15380618) Cosson B. … Beverley Osborne H. (Biol. Cell 2004) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64

Products for PABPN1L Gene

Sources for PABPN1L Gene

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