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PABPCP5 Gene

pseudogene GIFtS: 38

GC12P062501

poly(A) binding protein, cytoplasmic pseudogene 5
(Previous name: poly(A)-binding protein-like 2 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: PABPL2)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
PAB1 ^³
PABP1 ^³
PABPC2 ^³
PABPL2 ^²

Descriptions
PABP 1 ^³
Poly(A)-binding protein 1 ^³
poly(A) binding protein, cytoplasmic pseudogene 5 ^²
poly(A)-binding protein-like 2 ^¹

External Ids
HGNC: 8563¹
Entrez Gene: 341315²
UniProtKB: P11940³
Ensembl: ENSG00000070756⁷

Search outside databases for aliases for PABPCP5 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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UniProtKB/Swiss-Prot: PABP1_HUMAN, P11940

Function: Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of

mRNA metabolism such as pre-mRNA splicing. Its function in translational initiation regulation can

either be enhanced by PAIP1 or repressed by PAIP2. Can probably bind to cytoplasmic RNA sequences

other than poly(A) in vivo. May be involved in translationally coupled mRNA turnover. Implicated

with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay

of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q14.2 Ensembl cytogenetic band: 8q22.3 HGNC cytogenetic band: 12q14.2

PABPCP5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12P062501: (about GC identifiers)

Start:	62,501,990 bp from pter
End:	62,504,073 bp from pter
Size:	2,084 bases
Orientation:	plus strand

1 alternative location:

Chr8- 101,784,320-101,803,491

RefSeq DNA sequence:

NC_000012.10 NT_029419.11

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PABP1_HUMAN, P11940 (See protein sequence)

Recommended Name: Polyadenylate-binding protein 1

Size: 636 amino acids; 70671 Da

Subunit: Component of a multi subunit autoregulatory ribonucleoprotein complex (ARC), at least

composed of IGF2BP1, PABPC1 and CSDE1. Interacts with IGF2BP1. Part of a complex associated with

the FOS mCRD domain and consisting of HNRPD, SYNCRIP, PAIP1 and CSDE1/UNR. Interacts with the

PABPC1-interacting motif-1 (PAM1) and -2 (PAM2) of PAIP1 and PAIP2. Interacts with PAIP1 with a

1:1 stoichiometry and with PAIP2 with a 1:2 stoichiometry. The interaction with CSDE1 is direct

and RNA-independent. Found in a mRNP complex with YBX2. Interacts with PAPD4/GLD2. Identified in

the spliceosome C complex, at least composed of AQR, ASCC3L1, C19orf29, CDC40, CDC5L, CRNKL1,

DDX23, DDX41, DDX48, DDX5, DGCR14, DHX35, DHX38, DHX8, EFTUD2, FRG1, GPATC1, HNRPA1, HNRPA2B1,

HNRPA3, HNRPC, HNRPF, HNRPH1, HNRPK, HNRPM, HNRPR, HNRPU, KIAA1160, KIAA1604, LSM2, LSM3, MAGOH,

MORG1, PABPC1, PLRG1, PNN, PPIE, PPIL1, PPIL3, PPWD1, PRPF19, PRPF4B, PRPF6, PRPF8, RALY, RBM22,

RBM8A, RBMX, SART1, SF3A1, SF3A2, SF3A3, SF3B1, SF3B2, SF3B3, SFRS1, SKIV2L2, SNRPA1, SNRPB,

SNRPB2, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF, SNRPG, SNW1, SRRM1, SRRM2, SYF2, SYNCRIP, TFIP11,

THOC4, U2AF1, WDR57, XAB2 and ZCCHC8. Interacts with PIWIL1 (By similarity). Interacts with NFX1

Subcellular location: Cytoplasm. Nucleus. Note=Shuttles between the cytoplasm and the nucleus.

Relocalizes to the nucleus upon rotavirus A infection

Caution: Was originally (Ref.4) termed polyadenylate binding protein II

PDB structures from and Proteopedia :

1CVJ (3D)

1G9L (3D)

1JGN (3D)

1JH4 (3D)

Secondary accessions: Q15097 Q93004

Alternative splicing: 2 isoforms: P11940-1 P11940-2

Post-translational modifications:

Methylated by CARM1¹

Arg-493 is dimethylated, probably to asymmetric dimethylarginine¹

View phosphorylation sites using PhosphoSite²

ENSEMBL proteins:

ENSP00000174661 ENSP00000313007

Human Recombinant Proteins

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Antibodies for PABPCP5:

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Assays for PABPCP5:

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry P11940

ProtoNet protein and cluster: P11940

2 Blocks protein families:

IPB000504 RNA-binding region RNP-1 (RNA recognition motif)

IPB002004 Polyadenylate-binding protein/HECT-associated

UniProtKB/Swiss-Prot: PABP1_HUMAN, P11940

Domain: The RNA-binding domains RRM1 and RRM2 and the C-terminus (last 138 amino acids) regions

interact with the PABPC1-interacting motif-1 (PAM1) and -2 (PAM2) of PAIP1, respectively

Domain: The RNA-binding domains RRM2 and RRM3 and the C-terminus (last 138 amino acids) regions

interact with the PABPC1-interacting motif-1 (PAM1) and -2 (PAM2) of PAIP2, respectively

Similarity: Belongs to the polyadenylate-binding protein type-1 family

Similarity: Contains 1 PABC domain

Similarity: Contains 4 RRM (RNA recognition motif) domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Browse Invitrogen for RNAi
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Clones:		Browse Clone Ranger at Invitrogen for clones
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Primers:

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Browse Origene genome-wide validated SYBR primer pairs

UniProtKB/Swiss-Prot: PABP1_HUMAN, P11940

Function: Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of

mRNA metabolism such as pre-mRNA splicing. Its function in translational initiation regulation can

either be enhanced by PAIP1 or repressed by PAIP2. Can probably bind to cytoplasmic RNA sequences

other than poly(A) in vivo. May be involved in translationally coupled mRNA turnover. Implicated

with other RNA-binding proteins in the cytoplasmic deadenylation/translational and decay interplay

of the FOS mRNA mediated by the major coding-region determinant of instability (mCRD) domain

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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5/383 Interacting proteins for PABPCP5 (ENSP00000313007³ P11940^{1, 2}) via UniProtKB, MINT, and/or STRING (see all 383 )

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ATXN2	Q99700¹	STRING (score=.98) EBI-81531, EBI-697691
EIF4A2	Q14240¹	STRING (score=.951) EBI-81531, EBI-73473
RPL13AP18	P40429²	STRING (score=.946) MINT-6489539 MINT-6488590 MINT-6489355 MINT-6488791
RPS15AP24	P62244²	STRING (score=.899) MINT-6489539 MINT-6488590 MINT-6489355 MINT-6488791
RPS26P20	P62854²	STRING (score=.899) MINT-6489539 MINT-6488590 MINT-6489355 MINT-6488791

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences

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(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene)
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Inhib. RNA:		Browse Invitrogen for RNAi
		Browse for Gene Knock-down Tools from Millipore
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Browse Origene for 29mer shRNA kit in GFP-retroviral vector

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Explore Sigma-Aldrich super-pooled esiRNAs

Browse Origene for untagged/tagged cDNA clones in CMV expression vector

Additional cDNA sequence: XR_017616.1

22 DOTS entries:

DT.121125461 DT.91847189 DT.100700601 DT.91661782 DT.92470838 DT.100040311 DT.100043224 DT.100649325

DT.100700595 DT.100700596 DT.121466365 DT.121466368 DT.91801712 DT.91870787 DT.91954612 DT.92017835

DT.92359426 DT.92470903 DT.95267607 DT.95267608 DT.95267676 DT.97869208

9 AceView cDNA sequences:

BU146153 BF789912 AA651611 W46359 BF796552 BE828845 BG178223 W46219

BU071108

Unigene Cluster for PABPCP5:

Poly(A) binding protein, cytoplasmic pseudogene 5

Hs.632995 [show with all ESTs]

Unigene Representative Sequence: XR_017616

GeneLoc Exon Structure

5/12 Alternative Splicing Database (ASD) splice patterns (SP) for PABPCP5 (see all 12 )

ExUns:	1	^	2a	·	2b	·	2c	·	2d	^	3a	·	3b	·	3c	·	3d	^	4a	·	4b	·	4c	^	5a	·	5b	·	5c	^	6a	·	6b	^	7a	·	7b	·	7c	^	8	^	9	^	10	^	11	^	12a	·	12b	·
SP1:																									-
SP2:																									-								-
SP3:																					-		-		-
SP4:																									-								-
SP5:							-		-		-		-		-										-

ExUns:	12c	^	13a	·	13b	^	14
SP1:
SP2:
SP3:
SP4:
SP5:

About this scheme

ECgene alternative splicing isoforms for PABPCP5

2 Ensembl transcripts including schematic representations:

ENST00000347137 ENST00000318607

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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PABPCP5 expression in normal and diseased human tissues

¹ / ²

1 probe-set matching PABPCP5 gene

	Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
	Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
	31951_s_at²	U95-A	7	0.81	0.23	1.00	1.00	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.632995
UniProtKB/Swiss-Prot: PABP1_HUMAN, P11940
Tissue specificity: Ubiquitous

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for PABPCP5 gene from 1 species

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
baker's yeast (Saccharomyces cerevisiae)	PAB1(YER165W)⁴	5(510368-512101)	Poly(A) binding protein, part of the 3'-end RNA-processing more	--	856912 NP_011092.1

About this table Species with no ortholog for PABPCP5

ENSEMBL Gene Tree for PABPCP5

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for PABPCP5 gene

PABPC1L² PABPC3² PABPC5² PABPC1L2B² PABPCP2² PABPC4² PABPC1L2A²

Pseudogenes

3 related pseudogenes

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 604681

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/20 PubMed articles for PABPCP5 gene (see all 20 ):

Localization of the human poly(A)-binding protein gene (PAB1) to chromosomal regions 3q22-q25, 12q13-q14, and 13q12-q13 by in situ hybridization. (PubMed id 8432538)^{2, 3} Morris C.M. and Bodger M.P. (1993)
Nuclear localization of cytoplasmic poly(A)-binding protein upon rotavirus infection involves the interaction of NSP3 with eIF4G and RoXaN. (PubMed id 18799579)⁴ Harb M....Poncet D. (2008)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)⁴ Dephoure N.... Gygi S.P. (2008)
NFX1-123 and poly(A) binding proteins synergistically augment activation of telomerase in human papillomavirus type 16 E6-expressing cells. (PubMed id 17267499)⁴ Katzenellenbogen R.A....Galloway D.A. (2007)
The autoregulatory translational control element of poly(A)-binding protein mRNA forms a heteromeric ribonucleoprotein complex. (PubMed id 16356927)⁴ Patel G.P.... Bag J. (2005)
Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)⁴ Rush J.... Comb M.J. (2005)
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. (PubMed id 15782174)⁴ Ong S.E.... Mann M. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)⁴ Gerhard D.S....Malek J. (2004)
UNR, a new partner of poly(A)-binding protein, plays a key role in translationally coupled mRNA turnover mediated by the c-fos major coding-region determinant. (PubMed id 15314026)⁴ Chang T.-C.... Shyu A.-B. (2004)
Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. (PubMed id 11991638)⁴ Jurica M.S.... Moore M.J. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 341315	HGNC: 8563	AceView: LOC341315	Ensembl:ENSG00000070756	euGenes: HUgn341315
ECgene: PABPCP5	H-InvDB: PABPCP5

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for PABPCP5
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for PABPCP5:

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PABPCP5 Gene

pseudogene GIFtS: 38

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Genomic Location
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Proteins
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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

PABPCP5 Gene

pseudogene GIFtS: 38

Aliases & Descriptionsfor PABPCP5

Summariesfor PABPCP5

Genomic Locationfor PABPCP5

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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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for PABPCP5

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