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Aliases & Descriptions for PABPC4
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases APP-1 1 , 2 , 3 APP1 2 , 3 , 5 FLJ43938 2 IPABP 5 OTTHUMP00000010668 2 PABP4 2 , 3 , 5 iPABP 1 , 2 , 3
Descriptions Activated-platelet protein 1 3 Inducible poly(A)-binding protein 2 , 3 PABP 4 3 Poly(A)-binding protein 4 3 poly A binding protein, cytoplasmic 4 2 poly(A) binding protein, cytoplasmic 4 (inducible form) 2 poly(A)-binding protein, cytoplasmic 4 (inducible form) 1
Search outside databases for aliases for PABPC4 genePrevious GC identifers: GC01M039944 GC01M039030 GC01M039490 GC01M039439 GC01M039422 GC01M039695
Summaries for PABPC4 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for PABPC4 : Poly(A)-binding proteins (PABPs) bind to the poly(A) tail present at the 3-prime ends of mosteukaryotic mRNAs. PABPC4 or IPABP (inducible PABP) was isolated as an activation-induced T-cellmRNA encoding a protein. Activation of T cells increased PABPC4 mRNA levels in T cellsapproximately 5-fold. PABPC4 contains 4 RNA-binding domains and proline-rich C terminus. PABPC4 islocalized primarily to the cytoplasm. It is suggested that PABPC4 might be necessary forregulation of stability of labile mRNA species in activated T cells. PABPC4 was also identified asan antigen, APP1 (activated-platelet protein-1), expressed on thrombin-activated rabbit platelets.PABPC4 may also be involved in the regulation of protein translation in platelets andmegakaryocytes or may participate in the binding or stabilization of polyadenylates in plateletdense granules. Alternatively spliced transcript variants encoding different isoforms have beenfound for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: PABP4_HUMAN, Q13310 Function : Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes ofmRNA metabolism. Can probably bind to cytoplasmic RNA sequences other than poly(A) in vivo (Bysimilarity)
Gene Wiki entry for PABPC4
Genomic Location for PABPC4
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the PABPC4 gene Entrez Gene cytogenetic band: 1p32-p36 Ensembl cytogenetic band: 1p34.2 HGNC cytogenetic band: 1p34.2 PABPC4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M039799:
(about GC identifiers )
Start:
39,799,075 bp from pter
End:
39,815,049 bp from pter
Size:
15,975 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000001.9 NT_032977.8 Proteins for PABPC4
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: PABP4_HUMAN, Q13310 (See
protein sequence )Recommended Name: Polyadenylate-binding protein 4 Size : 644 amino acids; 70783 Da
Subunit : Interacts with NFX1
Subcellular location : Cytoplasm
Secondary accessions : B1ANQ8 Q6P0N3Alternative splicing : 2 isoforms : Q13310-1 Q13310-2
Post-translational modifications:
Arg-518 is dimethylated, probably to asymmetric dimethylarginine1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001129125.1 NP_001129126.1 NP_003810.1 ENSEMBL proteins: ENSP00000361953 ENSP00000361949 ENSP00000361947 ENSP00000361948 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for PABPC4: Assays for PABPC4:
Protein
Domains/ Families for PABPC4(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13310 ProtoNet protein and cluster: Q13310
2 Blocks protein families : IPB000504 RNA-binding region RNP-1 (RNA recognition motif) IPB002004 Polyadenylate-binding protein/HECT-associated UniProtKB/Swiss-Prot: PABP4_HUMAN, Q13310 Similarity : Belongs to the polyadenylate-binding protein type-1 familySimilarity : Contains 1 PABC domainSimilarity : Contains 4 RRM (RNA recognition motif) domains
Gene Function for PABPC4
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003819 Applied Biosystems Silencer ® siRNAs for PABPC4 Sigma-Aldrich siRNA for PABPC4 Sigma-Aldrich shRNA for PABPC4 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135653                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135653                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001135653  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001135653 UniProtKB/Swiss-Prot: PABP4_HUMAN, Q13310 Function : Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes ofmRNA metabolism. Can probably bind to cytoplasmic RNA sequences other than poly(A) in vivo (Bysimilarity)
Genatlas biochemistry entry for PABPC4 :poly (A) binding nuclear protein,cytoplasmic 4,inducible,detected in activated human T cells andactivated platelets,PABPC1 homolog 5/6 Gene Ontology (GO) molecular function terms (links to tree view) (see all 6
):
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Pathways & Interactions for PABPC4
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for PABPC4 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for PABPC4 5/17 Interacting proteins for PABPC4 (ENSP00000361949 3 Q13310 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 17
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for PABPC4 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for PABPC4
Transcripts for PABPC4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_003819 Sigma-Aldrich siRNA for PABPC4 Sigma-Aldrich shRNA for PABPC4 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001135653 NM_001135654 NM_003819
REFSEQ mRNAs for PABPC4 gene (3 alternative transcripts): NM_001135653.1 NM_001135654.1 NM_003819.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001135653 NM_001135654 NM_003819
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135653                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001135653                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001135653  
Additional cDNA sequence: AB208962.1 AK222917.1 BC029969.1 BC065540.1 BC071591.1 BC094755.1 BC106908.1 BC118568.1 D12799.1 U33818.1 U75686.1
21 DOTS entries : DT.100793433 DT.452920 DT.95165214 DT.92452279 DT.121422045 DT.95092742 DT.87079355 DT.92452278 DT.91937758 DT.100793435 DT.121422017 DT.92452282 DT.121422044 DT.99965099 DT.100725447 DT.121422006 DT.121061885 DT.87046059 DT.100793434 DT.100793436 DT.97855439
24/533 AceView cDNA sequences (see all 533
):AA194566 BM773073 BQ422891 AW778734 BQ681178 AA486221 AA399466 AI290918 AL702415 BE894365 BU165738 BI858827 BQ683329 AK125926 BX363405 BG315215 BQ064750 BP368719 R94184 BU501748 BG761844 AA675896 BG768456 BQ433743
highest scoring ESTs for PABPC4 :U75686 AA375867 AI126722 AL135636 AL559789 AW139446 AW249202 BE272151 BE379299 BE386964
Unigene Cluster for PABPC4: Poly(A) binding protein, cytoplasmic 4 (inducible form) Hs.169900 [show with all ESTs ] Unigene Representative Sequence: NM_001135653 GeneLoc Exon Structure 5/15 Alternative Splicing Database (ASD) splice patterns (SP) for PABPC4 (see all 15
) ExUns: 1 ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b · 12c · SP1 :               -   -       -     -                         -   SP2 :               -   -       -     -                           SP3 :               -   -       -     -                           SP4 :                                             -         SP5 :                                             -        
ExUns: 12d · 12e ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^ 18a · 18b SP1 : -   -   -       -               SP2 : -   -   -       -               SP3 : -   -   -   -     -               SP4 :                         SP5 : -   -   -   -                  
About this scheme ECgene alternative splicing isoforms for PABPC4 4 Ensembl transcripts including schematic representations : ENST00000372862
ENST00000372858
ENST00000372856
ENST00000372857
Expression for PABPC4
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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PABPC4 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for PABPC4 1 / 2 / 3
3 probe-sets matching PABPC4 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CCAAGAAAGASOURCE GeneReport for Unigene cluster: Hs.169900 Expression variation in blood from EXPOLDB for PABPC4
UniProtKB/Swiss-Prot: PABP4_HUMAN, Q13310 Tissue specificity : Expressed at low levels in resting normal T cells; following T-cell activation,however, mRNA levels are rapidly up-regulated
Orthologs for PABPC4
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for PABPC4 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for PABPC4 ENSEMBL Gene Tree for PABPC4 Paralogs for PABPC4 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for PABPC4 gene PABPC1L 2 PABPC3 2 PABPC1L2B 2 PABPCP5 2 PABPC5 2 PABPCP2 2 PABPC1L2A 2 Pseudogenes 2 related pseudogenes
SNPs/Variants for PABPC4 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for PABPC4 (up to first 250kb)
Disorders & Mutations for PABPC4
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603407 1 PharmGKB disease relationship for PABPC4 gene About this table
Medical News for PABPC4 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for PABPC4 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/21 PubMed articles for PABPC4 gene (see all 21
): Identification and structure of activated-platelet protein-1, a protein with RNA-binding domain motifs that is expressed by activated platelets. (PubMed id 9030741) 1, 3, 4 Houng A.K.... Reed G.L. (1997) iPABP, an inducible poly(A)-binding protein detected in activated human T cells. (PubMed id 8524242) 1, 3, 4 Yang H.... Lindsten T. (1995) Chromosomal localization of three human poly(A)-binding protein genes and four related pseudogenes. (PubMed id 10543404) 1, 2, 3 Feral C....Guellaen G. (1999) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. (PubMed id 15782174) 3, 4 Ong S.E.... Mann M. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 4 Dephoure N.... Gygi S.P. (2008) NFX1-123 and poly(A) binding proteins synergistically augment activation of telomerase in human papillomavirus type 16 E6-expressing cells. (PubMed id 17267499) 4 Katzenellenbogen R.A....Galloway D.A. (2007) Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931) 3 Ewing R.M....Figeys D. (2007) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 4 Gregory S.G.... Bentley D.R. (2006)
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Genome Databases showing PABPC4
(According to
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HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing PABPC4
(According to HUGE )
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Specialized Databases showing PABPC4 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for PABPC4 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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