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Aliases for PABPC3 Gene

Aliases for PABPC3 Gene

  • Poly(A) Binding Protein, Cytoplasmic 3 2 3
  • PABPL3 3 4 6
  • PABP3 3 4 6
  • Poly(A)-Binding Protein 3 3 4
  • Testis PABP 2 3
  • PABP-3 3 4
  • Testis-Specific Poly(A)-Binding Protein (PABP) 3
  • Testis-Specific Poly(A)-Binding Protein 3 3
  • Testis-Specific Poly(A)-Binding Protein 4
  • Poly(A)-Binding Protein, Cytoplasmic 3 2
  • Polyadenylate-Binding Protein 3 3
  • Poly(A)-Binding Protein-Like 3 3
  • TPABP 3

External Ids for PABPC3 Gene

Previous HGNC Symbols for PABPC3 Gene

  • PABPL3

Previous GeneCards Identifiers for PABPC3 Gene

  • GC13P023650
  • GC13P019650
  • GC13P024600
  • GC13P023468
  • GC13P024568
  • GC13P025670
  • GC13P006483

Summaries for PABPC3 Gene

Entrez Gene Summary for PABPC3 Gene

  • Messenger RNA stability and translation initiation are extensively under the control of poly(A)-binding proteins (PABP). See PABPC1 (MIM 604679) for background information.[supplied by OMIM, Jul 2002]

GeneCards Summary for PABPC3 Gene

PABPC3 (Poly(A) Binding Protein, Cytoplasmic 3) is a Protein Coding gene. Among its related pathways are RNA transport and Deadenylation-dependent mRNA decay. GO annotations related to this gene include nucleotide binding and poly(A) binding. An important paralog of this gene is PABPC1.

UniProtKB/Swiss-Prot for PABPC3 Gene

  • Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of mRNA metabolism. Binds poly(A) with a slightly lower affinity as compared to PABPC1

Gene Wiki entry for PABPC3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PABPC3 Gene

Genomics for PABPC3 Gene

Regulatory Elements for PABPC3 Gene

Genomic Location for PABPC3 Gene

Start:
25,095,868 bp from pter
End:
25,099,254 bp from pter
Size:
3,387 bases
Orientation:
Plus strand

Genomic View for PABPC3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PABPC3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PABPC3 Gene

Proteins for PABPC3 Gene

  • Protein details for PABPC3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H361-PABP3_HUMAN
    Recommended name:
    Polyadenylate-binding protein 3
    Protein Accession:
    Q9H361
    Secondary Accessions:
    • Q8NHV0
    • Q9H086

    Protein attributes for PABPC3 Gene

    Size:
    631 amino acids
    Molecular mass:
    70031 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for PABPC3 Gene

neXtProt entry for PABPC3 Gene

Proteomics data for PABPC3 Gene at MOPED

Post-translational modifications for PABPC3 Gene

  • Ubiquitination at Lys78, Lys208, Lys213, Lys231, Lys259, Lys284, Lys333, Lys348, and Lys361
  • Modification sites at PhosphoSitePlus

Other Protein References for PABPC3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PABPC3 Gene

Domains for PABPC3 Gene

Gene Families for PABPC3 Gene

HGNC:
  • RBM :RNA binding motif (RRM) containing

Graphical View of Domain Structure for InterPro Entry

Q9H361

UniProtKB/Swiss-Prot:

PABP3_HUMAN :
  • Q9H361
Domain:
  • Contains 1 PABC domain.
  • Contains 4 RRM (RNA recognition motif) domains.
Family:
  • Belongs to the polyadenylate-binding protein type-1 family.
genes like me logo Genes that share domains with PABPC3: view

Function for PABPC3 Gene

Molecular function for PABPC3 Gene

GENATLAS Biochemistry: poly(A) binding protein,cytoplasmic 3
UniProtKB/Swiss-Prot Function: Binds the poly(A) tail of mRNA. May be involved in cytoplasmic regulatory processes of mRNA metabolism. Binds poly(A) with a slightly lower affinity as compared to PABPC1

Gene Ontology (GO) - Molecular Function for PABPC3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding --
GO:0008143 poly(A) binding IDA 11328870
genes like me logo Genes that share ontologies with PABPC3: view

miRNA for PABPC3 Gene

miRTarBase miRNAs that target PABPC3

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for PABPC3 Gene

Localization for PABPC3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PABPC3 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PABPC3 Gene COMPARTMENTS Subcellular localization image for PABPC3 gene
Compartment Confidence
cytosol 3
nucleus 3

Gene Ontology (GO) - Cellular Components for PABPC3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm NAS 11328870
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with PABPC3: view

Pathways for PABPC3 Gene

genes like me logo Genes that share pathways with PABPC3: view

Pathways by source for PABPC3 Gene

3 KEGG pathways for PABPC3 Gene

Gene Ontology (GO) - Biological Process for PABPC3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016071 mRNA metabolic process NAS 11328870
genes like me logo Genes that share ontologies with PABPC3: view

Transcripts for PABPC3 Gene

mRNA/cDNA for PABPC3 Gene

(32) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PABPC3 Gene

Poly(A) binding protein, cytoplasmic 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PABPC3 Gene

No ASD Table

Relevant External Links for PABPC3 Gene

GeneLoc Exon Structure for
PABPC3
ECgene alternative splicing isoforms for
PABPC3

Expression for PABPC3 Gene

mRNA expression in normal human tissues for PABPC3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PABPC3 Gene

This gene is overexpressed in Testis (43.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for PABPC3 Gene

SOURCE GeneReport for Unigene cluster for PABPC3 Gene Hs.458280

mRNA Expression by UniProt/SwissProt for PABPC3 Gene

Q9H361-PABP3_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expressions with PABPC3: view

Orthologs for PABPC3 Gene

This gene was present in the common ancestor of animals.

Orthologs for PABPC3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PABPC3 35
  • 99 (n)
  • 97.78 (a)
PABPC3 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Pabpc2 36
  • 75 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 84 (a)
ManyToMany
-- 36
  • 83 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 92 (a)
OneToMany
chicken
(Gallus gallus)
Aves PABPC1 36
  • 91 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 86 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii pabpc1a 35
  • 73.75 (n)
  • 83.87 (a)
pabpc1a 36
  • 83 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta pAbp 37
  • 54 (a)
CG4612 37
  • 48 (a)
worm
(Caenorhabditis elegans)
Secernentea pab-2 37
  • 54 (a)
pab-1 37
  • 50 (a)
Species with no ortholog for PABPC3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for PABPC3 Gene

ENSEMBL:
Gene Tree for PABPC3 (if available)
TreeFam:
Gene Tree for PABPC3 (if available)

Paralogs for PABPC3 Gene

Selected SIMAP similar genes for PABPC3 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for PABPC3 Gene

genes like me logo Genes that share paralogs with PABPC3: view

Variants for PABPC3 Gene

Sequence variations from dbSNP and Humsavar for PABPC3 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs3002211 -- 25,094,923(+) CCCCC(A/C)AACTG upstream-variant-2KB
rs3002212 -- 25,096,675(+) ATGAA(C/T)GGAAT reference, synonymous-codon
rs9551177 -- 25,094,587(+) CTCAC(G/T)CCTGT upstream-variant-2KB
rs9553534 -- 25,098,191(+) TAAAA(A/T)AAAAA utr-variant-3-prime
rs9581259 -- 25,098,757(+) AACAT(A/T)TGTTC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for PABPC3 Gene

Variant ID Type Subtype PubMed ID
nsv435952 OTHER Inversion 17901297
esv2747161 CNV Deletion 23290073
nsv899942 CNV Gain 21882294
dgv7e24 CNV Loss 17666407
esv2659512 CNV Deletion 23128226

Relevant External Links for PABPC3 Gene

HapMap Linkage Disequilibrium report
PABPC3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PABPC3 Gene

Disorders for PABPC3 Gene

Relevant External Links for PABPC3

Genetic Association Database (GAD)
PABPC3
genes like me logo Genes that share disorders with PABPC3: view

No data available for UniProtKB/Swiss-Prot for PABPC3 Gene

Publications for PABPC3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. Chromosomal localization of three human poly(A)-binding protein genes and four related pseudogenes. (PMID: 10543404) FAcral C. … GuellaAn G. (Hum. Genet. 1999) 2 3
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  4. Human testis expresses a specific poly(A)-binding protein. (PMID: 11328870) Feral C. … Pawlak A. (Nucleic Acids Res. 2001) 3 4
  5. Localization of the human poly(A)-binding protein gene (PAB1) to chromosomal regions 3q22-q25, 12q13-q14, and 13q12-q13 by in situ hybridization. (PMID: 8432538) Morris C.M. … Bodger M.P. (Genomics 1993) 2 3

Products for PABPC3 Gene

  • antibodies-online proteins for PABPC3
  • antibodies-online antibodies for PABPC3
  • antibodies-online kits for PABPC3

Sources for PABPC3 Gene

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