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P2RX5 Gene

protein-coding   GIFtS: 59

GC17M003523
purinergic receptor P2X, ligand-gated ion channel, 5
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
MGC47755 2
P2X5 1, 2, 3
P2X5R 2
Descriptions
ATP receptor 3
ATP receptor subunit 2
P2X purinoceptor 5 2
Purinergic receptor 3
ionotropic ATP receptor P2X5 2
purinergic receptor P2X ligand gated ion channel 5 2
purinergic receptor P2X, ligand-gated ion channel, 5 2
purinergic receptor P2X5 2
External Ids
HGNC: 85361
Entrez Gene: 50262
UniProtKB: Q930863
Ensembl: ENSG000000834547
Search outside databases for aliases for P2RX5 gene

Previous GC identifers: GC17M003890 GC17M003526 GC17M003784 GC17M003785

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for P2RX5:
The product of this gene belongs to the family of purinoceptors for ATP. This receptor functions as
a ligand-gated ion channel. Several characteristic motifs of ATP-gated channels are present in its
primary structure, but, unlike other members of the purinoceptors family, this receptor has only a
single transmembrane domain. Three transcript variants encoding distinct isoforms have been
identified for this gene. [provided by RefSeq]

UniProtKB/Swiss-Prot: P2RX5_HUMAN, Q93086
Function: Receptor for ATP that acts as a ligand gated ion channel

Gene Wiki entry for P2RX5

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the P2RX5 gene  

Entrez Gene cytogenetic band: 17p13.3   Ensembl cytogenetic band:  17p13.3   HGNC cytogenetic band: 17p13.3

P2RX5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M003523:     (about GC identifiers)

Start:
3,522,497 bp from pter
End:
3,546,332 bp from pter
Size:
23,836 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000017.9  NT_010718.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: P2RX5_HUMAN, Q93086 (See protein sequence)
Recommended Name: P2X purinoceptor 5  
Size: 422 amino acids; 47205 Da
Subunit: Homo- or heteropolymers (By similarity)
Subcellular location: Membrane; Multi-pass membrane protein
Sequence caution: Sequence=AAF43106.1; Type=Erroneous gene model prediction; Sequence=AK307959;
Type=Frameshift; Positions=112; Sequence=BAD92860.1; Type=Frameshift; Positions=112;
Sequence=BC028084; Type=Frameshift; Positions=112;
Secondary accessions: O43450 O75540 Q59F38 Q8IXW4 Q93087 Q9NZV0
Alternative splicing: 4 isoforms:  Q93086-3   Q93086-1   Q93086-2   Q93086-4   

REFSEQ proteins (3 alternative transcripts): 
NP_002552.2  NP_778255.1  NP_778256.1  


ENSEMBL proteins: 
ENSP00000342161 ENSP00000225328 ENSP00000371255 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (P2X5b, P2X5)
Human Recombinant Proteins from Abnova (P2RX5)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005887 integral to plasma membrane TAS9414125
GO:0016020 membrane IEA--
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Antibodies for P2RX5: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of P2RX5
Sigma-Aldrich Antibodies for P2RX5
Browse R&D Systems for Antibodies
Antibodies from Abcam (P2X5b, P2X5), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (P2RX5)
Novus Biologicals Antibodies for P2RX5

Assays for P2RX5: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

2 InterPro domains/families:
 IPR001429 P2X_purnocptor
 IPR003048 P2X5_purnocptor


   GeneDecks  P2RX5 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q93086

ProtoNet protein and cluster: Q93086

2 Blocks protein families:
IPB001429 ATP P2X receptor
IPB003048 P2X5 purinoceptor signature


UniProtKB/Swiss-Prot: P2RX5_HUMAN, Q93086
Similarity: Belongs to the P2X receptor family

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (P2RX5)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (P2RX5)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_002561

              Applied Biosystems Silencer® siRNAs for P2RX5

              Sigma-Aldrich siRNA and siRNA Panels for P2RX5  
                     Sigma-Aldrich shRNA Panels and shRNA for P2RX5  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for P2RX5
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_002561
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_002561
                                 untagged cDNA clones in CMV expression vector (see all 3): NM_002561 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_002561

UniProtKB/Swiss-Prot: P2RX5_HUMAN, Q93086
Function: Receptor for ATP that acts as a ligand gated ion channel

5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0001614 purinergic nucleotide receptor activity NAS17895406
GO:0004888 transmembrane receptor activity TAS9414125
GO:0004931 ATP-gated cation channel activity NAS17895406
GO:0005216 ion channel activity TAS9414125
GO:0005524 ATP binding IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


2 Kegg Pathways  (Kegg details for P2RX5):
 hsa04020 Calcium signaling pathway
 hsa04080 Neuroactive ligand-receptor interaction

   GeneDecks  P2RX5 for the pathways selected above  
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5/26 Interacting proteins for P2RX5 (ENSP000003712553) via UniProtKB, MINT, and/or STRING (see all 26 )
InteractantInteraction Details
GeneCardExternal ID(s)
LIN7AENSP000002612033STRING (score=.943)
CNTN2ENSP000003306333STRING (score=.928)
USH1CENSP000000052263STRING (score=.899)
RYR3ENSP000003548523STRING (score=.87)
GRIN2CENSP000003386453STRING (score=.862)
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5 Gene Ontology (GO) biological process terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0006811 ion transport IEA--
GO:0007165 signal transduction TAS9414125
GO:0007399 nervous system development TAS9414125
GO:0010524 positive regulation of calcium ion transport into cytosol NAS17895406
GO:0050850 positive regulation of calcium-mediated signaling NAS17895406
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Compounds for P2RX5 available from Tocris Bioscience
CompoundAction CAS number
iso-PPADS tetrasodium saltP2X antagonist
NF 023Selective, competitive P2X antagonist[104869-31-0]
2-Methylthioadenosine triphosphate tetrasodium saltP2 purinergic agonist[43170-89-4]
TNP-ATP triethylammonium saltPotent, selective P2X antagonist[61368-63-6]
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2 Novoseek chemical compound relationships for P2RX5 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
atp 66.43 5 10496954 (1), 17043813 (1), 10633863 (1), 16373435 (1)
calcium 25.69 4 17043813 (2), 18404509 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (P2RX5)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (P2RX5)
               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3): NM_002561

              Sigma-Aldrich siRNA and siRNA Panels for P2RX5  
                     Sigma-Aldrich shRNA Panels and shRNA for P2RX5  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_002561  NM_175080  NM_175081  

REFSEQ mRNAs for P2RX5 gene (3 alternative transcripts): 

NM_002561.2   NM_175080.1   NM_175081.1   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_002561  NM_175080  NM_175081  

               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3): NM_002561
                                 Myc/DDK tagged cDNA clones in CMV expression vector (see all 3): NM_002561
                                 untagged cDNA clones in CMV expression vector (see all 3): NM_002561 

Additional cDNA sequence: 

AF016709.1 AF070573.1 AK290889.1 AK293610.1 AK307959.1 BC006220.2 BC008319.1 BC016917.1 
BC028084.1 BC039015.1 CR612864.1 CR624034.1 DQ234349.1 DQ851492.1 U49395.1 U49396.1 

10 DOTS entries:

DT.100777390  DT.120962919  DT.441930  DT.91864652  DT.100703680  DT.91750971  DT.213993  DT.99936057 
DT.75146946  DT.86846987 

24/114 AceView cDNA sequences (see all 114 ):

BI253383 AI090922 BQ217944 BQ222641 AA836604 BQ055487 BM693531 CR612864 
NM_175080 BC008319 BQ270311 AI920988 CR624034 NM_175081 BC039015 BE906689 
AI524622 AA327481 BM932250 AF070573 BC028084 NM_002561 BC016917 AF016709 

highest scoring ESTs for P2RX5:

U49395 AF016709 AF070573 BC006220 BC008319 BC016917 BC028084 BC039015 BE791872 BI837109 

Unigene Cluster for P2RX5:

Purinergic receptor P2X, ligand-gated ion channel, 5
Hs.408615  [show with all ESTs]
Unigene Representative Sequence: NM_002561


GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for P2RX5

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1:                          -                                                                           
SP2:                          -           -                                                               
SP3:                          -           -                                                               
SP4:                          -                                                                           
SP5:                                      -                                                               

About this scheme

ECgene alternative splicing isoforms for P2RX5

3 Ensembl transcripts including schematic representations:
ENST00000345901  ENST00000225328  ENST00000381833  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

P2RX5 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for P2RX5

1 / 2 / 3

3 probe-sets matching P2RX5 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
40396_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 U49395 0.80 1.00 0.91 1

210448_s_at2, 3 U133-A 1 1.00 1.00 -- -- U49396 0.60 1.00 0.82 1

210448_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  P2RX5 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CCACTTTGGC

SOURCE GeneReport for Unigene cluster: Hs.408615

Expression variation in blood from EXPOLDB for P2RX5

UniProtKB/Swiss-Prot: P2RX5_HUMAN, Q93086
Tissue specificity: Expressed at high levels in brain and immune system

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for P2RX5 gene from 5/8 species (see all 8 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
dog
(Canis familiaris)
P2RX51   -- purinergic receptor P2X, ligand-gated ion channel, more 81.73(n)
76.54(a)
448785  XM_548343.2  XP_548343.2 
chimpanzee
(Pan troglodytes)
P2RX51   -- purinergic receptor P2X, ligand-gated ion channel, more 98.82(n)
99.53(a)
454434  XM_511272.2  XP_511272.2 
cow
(Bos taurus)
P2RX51   -- purinergic receptor P2X, ligand-gated ion channel, more 84.23(n)
77.46(a)
338035  XM_594012.3  XP_594012.3 
rat
(Rattus norvegicus)
P2rx51   -- purinergic receptor P2X, ligand-gated ion channel, more 75.43(n)
69.59(a)
113995  NM_080780.2  NP_542958.2 
mouse
(Mus musculus)
P2rx51, 5 115
purinergic receptor P2X, ligand-gated ion channel, more1, 5 75(n)1
69.42(a)1
940451  NM_033321.21  NP_201578.11 
 AF3333315  AF3333325  (see all 12)
About this table        Species with no ortholog for P2RX5

ENSEMBL Gene Tree for P2RX5
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for P2RX5 gene
P2RX12  P2RX42  P2RX62  P2RX72  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/231 NCBI SNPs in P2RX5 are shown (see all 231 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 71)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 17 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs10634971,2
A,C,F,H3523895(-) CTTACG/ATTCAG 2 -- ut31 ese313Minor allele frequency- A:0.14MN EU EA WA NA 1174
rs1605901,2
C,F,H,O3547057(-) CGCGCA/GTTAGT 3 -- ng314Minor allele frequency- G:0.21EU EA WA 418
rs2227581,2
A,C,F,H3523473(+) AGCTGC/TGGCAC 2 -- ut31 ese311Minor allele frequency- T:0.00EA NA MN EU WA 722
--
rs1843431,2
A,C3548100(-) CTGTTT/GAAAAA 3 -- ng31 trp31Minor allele frequency- G:0.00MN 184
rs11624611,2
A,C3547391(-) CCCCCC/GGGAGG 3 -- ng310--------
--
rs21346331,2
C,F3548244(+) CCACCA/G/TAGTGA 3 -- ng311EA 1498
rs80662161,2
C3546411(+) ACCGCC/GCTGTG 3 -- ng310--------
rs37604771,2
F3548198(-) CAGGGG/TGCTGA 3 -- ng311Minor allele frequency- T:0.06EA 1466
rs1492451,2
A,C,F,H3526401(-) GCCGAG/AAACTC 2 -- int112Minor allele frequency- A:0.46MN NA EU EA WA 1154
rs116553121,2
A,C,F,H3545274(+) TTGCCT/CCTTTG 3 -- int11Minor allele frequency- C:0.30EU 120
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HapMap Linkage Disequilibrium images for P2RX5 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 602836

1 Novoseek disease relationship for P2RX5 gene

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
tumors 0.00 1 12880424 (1)
About this table

Human Gene Mutation Database: P2RX5

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/40 PubMed articles for P2RX5 gene (see all 40 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 5026 HGNC: 8536 AceView: P2RX5 Ensembl:ENSG00000083454 euGenes: HUgn5026
ECgene: P2RX5 H-InvDB: P2RX5
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

NameDescription
Wikipedia http://en.wikipedia.org/wiki/P2X_receptor
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for P2RX5:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
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 Predesigned and custom siRNAs for P2RX5 Antibodies for P2RX5
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for P2RX5 Browse small molecules at Sigma-Aldrich
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 Tocris compounds for P2RX5




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 Antibodies for P2RX5

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