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P11 Gene

protein-coding GIFtS: 47

GC12M046389

26 serine protease
symbol from the EntrezGene Database
NOT approved by the HUGO Gene Nomenclature Committee (HGNC).

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
EC 3.4.21.- ^³
MGC133268 ^²
PP11 ^², ³
PRSS26 ^²

Descriptions
22 serine protease ^²
26 serine protease ^²
placental protein 11 ^²

External Ids
Entrez Gene: 8909²
UniProtKB: P21128³
Ensembl: ENSG00000111405⁷

Search outside databases for aliases for P11 gene

Previous GC identifers: GC12M048114 GC12M048001 GC12M047820

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for P11:

This gene encodes a protein with protease activity. Its specific function has not been determined.

The protein may be useful as a tumor marker. [provided by RefSeq]

UniProtKB/Swiss-Prot: PP11_HUMAN, P21128

Function: Probable serine protease

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the P11 gene

Entrez Gene cytogenetic band: 12q13.1 Ensembl cytogenetic band: 12q13.11

P11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12M046389: (about GC identifiers)

Start:	46,389,795 bp from pter
End:	46,405,617 bp from pter
Size:	15,823 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000012.10 NT_029419.11

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PP11_HUMAN, P21128 (See protein sequence)

Recommended Name: Placental protein 11 precursor

Size: 369 amino acids; 42121 Da

Secondary accessions: Q2NKJ4

Post-translational modifications:

It has been suggested that the active SMB domain may be permitted considerable disulfide bond

heterogeneity or variability, thus two alternate disulfide patterns based on 3D structures are

described with 1 disulfide bond conserved in both¹

REFSEQ proteins: NP_006016.1

ENSEMBL proteins:

ENSP00000229003

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse Abcam for Recombinant Proteins
	Human Recombinant Proteins from Abnova (P11)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

4 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005576	extracellular region	TAS	1710108
GO:0005615	extracellular space	TAS	2350438
GO:0005737	cytoplasm	TAS	2350438
GO:0005886	plasma membrane	TAS	1710108

About this table

Antibodies for P11:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for P11
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for P11

Assays for P11:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry P21128

ProtoNet protein and cluster: P21128

UniProtKB/Swiss-Prot: PP11_HUMAN, P21128

Similarity: Contains 1 SMB (somatomedin-B) domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (P11)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006025

Applied Biosystems Silencer® siRNAs for P11

Sigma-Aldrich siRNA for P11

Sigma-Aldrich shRNA for P11

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_006025
Myc/DDK tagged cDNA clone in CMV expression vector: NM_006025
untagged cDNA clone in CMV expression vector: NM_006025

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_006025

UniProtKB/Swiss-Prot: PP11_HUMAN, P21128

Function: Probable serine protease

Enzyme Number (IUBMB): EC 3.4.21.-

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0008083	growth factor activity	NAS	1710108
GO:0008233	peptidase activity	IEA	--
GO:0008236	serine-type peptidase activity	IDA	2350438

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for P11

1 Interacting protein for P11 (ENSP00000229003³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
PSG9	ENSP00000270077³	STRING (score=.714)

About this table

2 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006508	proteolysis	IDA	2350438
GO:0007565	female pregnancy	IEP	2350438

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for P11

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (P11)
		Browse for Gene Knock-down Tools from Millipore
		Browse Abnova for Chimera RNAi Products

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006025

Sigma-Aldrich siRNA for P11

Sigma-Aldrich shRNA for P11

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_006025

REFSEQ mRNAs for P11 gene:

NM_006025.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_006025

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006025
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_006025
                                 untagged cDNA clone in CMV expression vector: NM_006025

Additional cDNA sequence:

AK075446.1 AK295963.1 AK300169.1 AK302308.1 AK314688.1 BC069698.1 BC069715.1 BC074763.2

BC111782.1 CR592392.1 CR606110.1 M32402.1 M36109.1

3 DOTS entries:

DT.411623 DT.100758154 DT.121191909

24/39 AceView cDNA sequences (see all 39 ):

BC074763 H00449 BX439517 AA601959 CR592392 BX334269 BC069715 AA985373

AK075446 BX336810 CR606110 NM_006025 BX336809 BX094159 BI821632 AA455089

BG619321 BX334268 BX327153 AW271973 M36109 M32402 BX327152 BU751979

highest scoring ESTs for P11:

M32402 AK075446 BC069698 BC069715 BX334269 BX336810 BX344481 M36109 AA455089 AA601959

Unigene Cluster for P11:

26 serine protease

Hs.997 [show with all ESTs]

Unigene Representative Sequence: AK075446

GeneLoc Exon Structure

5 Alternative Splicing Database (ASD) splice patterns (SP) for P11

ExUns:	1a	·	1b	·	1c	^	2	^	3	^	4a	·	4b	^	5	^	6a	·	6b	·	6c	^	7a	·	7b	^	8a	·	8b	·	8c	^	9	^	10
SP1:
SP2:
SP3:							-
SP4:							-		-
SP5:

About this scheme

1 Ensembl transcript including schematic representation:

ENST00000229003

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

P11 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for P11

¹ / ² / ³

3 probe-sets matching P11 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
37093_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	M32402	1.00	1.00	1.00	1
206605_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_006025	0.60	1.00	0.82	1
206605_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

About this table

Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: GGAAAGAGAT

SOURCE GeneReport for Unigene cluster: Hs.997
Expression variation in blood from EXPOLDB for P11
UniProtKB/Swiss-Prot: PP11_HUMAN, P21128
Tissue specificity: Placental specific, but also associated with various malignant neoplasms

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for P11 gene from 5/9 species (see all 9 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	LOC609443¹	--	similar to Placental protein 11 precursor (PP11)	85.19(n) 81.3(a)	609443 XM_846703.1 XP_851796.1
chimpanzee (Pan troglodytes)	P11¹	--	placental protein 11	99.82(n) 99.73(a)	466966 XM_522366.2 XP_522366.2
cow (Bos taurus)	P11¹	--	26 serine protease	86.72(n) 86.45(a)	525399 XM_603752.3 XP_603752.3
rat (Rattus norvegicus)	Pp11r¹	--	placental protein 11 related	83.29(n) 82.38(a)	680317 XM_001056619.1 XP_001056619.1
mouse (Mus musculus)	Pp11r^{1, 5}	15 (56.80 cM)⁵	placental protein 11 related^{1, 5}	83.33(n)¹ 84.77(a)¹	19011¹ NM_008902.2¹ NP_032928.1¹ AK132616⁵ AK169457⁵ (see all 7)

About this table Species with no ortholog for P11

ENSEMBL Gene Tree for P11

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/95 NCBI SNPs in P11 are shown (see all 95 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 81)

AB	SNP ID	Valid	Chr 12 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs1233046^1,2	A,C,F,H,O	46389591(-)	`ATGAAG/AAGTGG`	1	--	ng5¹		11		NA MN EA EU WA	2452
	rs2074532^1,2	A,C,F,H	46405829(-)	`TCAGCC/TCATGG`	1	--	ng3¹		12		EA NA EU WA	2010
	rs2074531^1,2	A,C,F,H	46406099(-)	`CGCTCG/TACATG`	1	--	ng3¹		16		EA NA EU WA	2248
	rs3764020^1,2	A,C,F,H	46406399(-)	`TACTTG/AGCAGA`	1	--	ng3¹		8		EU EA WA	838
	rs3764015^1,2	A,C,F,H	46407568(-)	`CCCAGC/TTCCAA`	1	--	ng3¹		5		EA EU WA	1906
	rs3829317^1,2	A,C,F,H	46406277(-)	`TAAGTG/TGGGGT`	1	--	ng3¹ tfbs³		8		EU EA WA	834
	rs7306556^1,2	A,C,F,H	46406264(+)	`TTTCAC/GTCCCT`	1	--	ng3¹		4		EU EA WA	412
	rs7306680^1,2	A,C,F,H	46406222(+)	`AGGCAA/GCCGAA`	1	--	ng3¹		8		EU EA WA	816
--	rs3764016^1,2	A,C	46407168(-)	`CAGCTC/TCCTTC`	1	--	ng3¹		0	--	--	--	--
--	rs3764018^1,2	A,C	46407102(-)	`gctcaA/Cacctg`	1	--	ng3¹		0	--	--	--	--

About this table

HapMap Linkage Disequilibrium images for P11 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 606720

Human Genome Epidemiology Navigator: P11 (39 documents)

(Possibly Related Articles in Doctor's Guide)
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ICACT: Docetaxel-Doxorubicin Dose-Dense Sequential Treatment Prolongs Survival in Stage II and III Breast Cancer

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

10 PubMed articles for P11 gene:

Cloning and expression of a cDNA encoding human placental protein 11, a putative serine protease with diagnostic significance as a tumor marker. (PubMed id 2350438)^{1, 3, 4} Grundmann U.... Amann E. (1990)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Homology of placental protein 11 and pea seed albumin 2 with vitronectin. (PubMed id 1710108)^{3, 4} Jenne D.E. (1991)
The tumor marker human placental protein 11 is an endoribonuclease. (PubMed id 18936097)^{1, 3} Laneve P....Caffarelli E. (2008)
Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PubMed id 16303743)³ Otsuki T....Isogai T. (2005)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Immunohistochemical detection of pregnancy-specific protein (SP1) and placenta-specific tissue proteins (PP5, PP10, PP11 and PP12) in ovarian adenocarcinomas. (PubMed id 6755403)³ Inaba N....Bohn H. (1982)
A homologue of human placental protein, PP11, and mouse T cell-specific protein, Tcl-30, in exocrine pancreas of a teleost (Paralichthys olivaceus). (PubMed id 12431400)¹ Suzuki T....Kurokawa T. (2002)
Tcl-30, a new T cell-specific gene expressed in immature glucocorticoid-sensitive thymocytes. (PubMed id 1506680)¹ Baughman G....Bourgeois S. (1992)
Taxonomy of nuclear receptors and SERPINS by multivariate analysis of amino-acid composition. (PubMed id 8809198)¹ Ojasoo T. and Dore J.C. (1996)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 8909

AceView: P11

Ensembl:ENSG00000111405

euGenes: HUgn8909

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for P11
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for P11:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for P11-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for P11		Antibodies for P11
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for P11		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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P11 Gene at Home site.
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P11 Gene

protein-coding GIFtS: 47

Aliases &
Descriptions
for P11

Summaries
for P11

Genomic Location
for P11

Proteins
for P11

Protein Domains/
Families
for P11

Gene Function
for P11

Pathways & Interactions
for P11

Drugs & Compounds
for P11

Transcripts
for P11

Expression
for P11

Orthologs
for P11

Paralogs
for P11

SNPs/Variants
for P11

Disorders & Mutations
for P11

Medical News
for P11

Publications
for P11

Search for P11

Genome Databases showing P11

Other Databases showing P11

Specialized Databases showing P11

Licensable Technologies
for P11

Services
for P11

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

P11 Gene

protein-coding GIFtS: 47

Aliases & Descriptionsfor P11

Summariesfor P11

Genomic Locationfor P11

Proteinsfor P11

Protein Domains/Familiesfor P11

Gene Functionfor P11

Pathways & Interactionsfor P11

Drugs & Compoundsfor P11

Transcriptsfor P11

Expression for P11

Orthologsfor P11

Paralogsfor P11

SNPs/Variantsfor P11

Disorders & Mutationsfor P11

Medical Newsfor P11

Publicationsfor P11

Search for P11

Genome Databases showing P11

Other Databases showing P11

Specialized Databases showing P11

Licensable Technologiesfor P11

Servicesfor P11

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for P11

Summaries
for P11

Genomic Location
for P11

Proteins
for P11

Protein Domains/
Families
for P11

Gene Function
for P11

Pathways & Interactions
for P11

Drugs & Compounds
for P11

Transcripts
for P11

Expression
for P11

Orthologs
for P11

Paralogs
for P11

SNPs/Variants
for P11

Disorders & Mutations
for P11

Medical News
for P11

Publications
for P11

Licensable Technologies
for P11

Services
for P11