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OXNAD1 Gene

protein-coding   GIFtS: 50
GCID: GC03P016307

Oxidoreductase NAD-Binding Domain Containing 1

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Oxidoreductase NAD-Binding Domain Containing 11 2
Oxidoreductase NAD-Binding Domain-Containing Protein 12
EC 1.-.-.-3

External Ids:    HGNC: 251281   Entrez Gene: 921062   Ensembl: ENSG000001548147   UniProtKB: Q96HP43   

Export aliases for OXNAD1 gene to outside databases

Previous GC identifer: GC03P016282


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for OXNAD1 Gene:
OXNAD1 (oxidoreductase NAD-binding domain containing 1) is a protein-coding gene. GO annotations related to this gene include oxidoreductase activity.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NT_022517.19  NC_018914.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the OXNAD1 gene promoter:
         Pbx1a   HTF   E47   AREB6   CREB   E2F   E2F-1   deltaCREB   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOXNAD1 promoter sequence
   Search Chromatin IP Primers for OXNAD1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OXNAD1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p25-p24   Ensembl cytogenetic band:  3p25.1   HGNC cytogenetic band: 3p25-p24

OXNAD1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OXNAD1 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P016307:  view genomic region     (about GC identifiers)

Start:
16,306,667 bp from pter      End:
16,391,806 bp from pter
Size:
85,140 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: OXND1_HUMAN, Q96HP4 (See protein sequence)
Recommended Name: Oxidoreductase NAD-binding domain-containing protein 1 precursor  
Size: 312 amino acids; 34854 Da
Secondary accessions: Q2HYC7 Q59FA4

Explore the universe of human proteins at neXtProt for OXNAD1: NX_Q96HP4

Explore proteomics data for OXNAD1 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See OXNAD1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_612390.1  
    ENSEMBL proteins: 
     ENSP00000285083   ENSP00000475547   ENSP00000398867   ENSP00000389872   ENSP00000397374  
     ENSP00000476239   ENSP00000437967  

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    Cloud-Clone Corp. Proteins for OXNAD1

     
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    antibodies-online proteins for OXNAD1 (6 products) 

     
    antibodies-online peptides for OXNAD1

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    antibodies-online kits for OXNAD1 (6 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    4 InterPro protein domains:
     IPR017927 Fd_Rdtase_FAD-bd
     IPR001433 OxRdtase_FAD/NAD-bd
     IPR001221 Phe_hydroxylase
     IPR017938 Riboflavin_synthase-like_b-brl

    Graphical View of Domain Structure for InterPro Entry Q96HP4

    ProtoNet protein and cluster: Q96HP4

    1 Blocks protein domain: IPB001433 Oxidoreductase FAD/NAD(P)-binding

    UniProtKB/Swiss-Prot: OXND1_HUMAN, Q96HP4
    Similarity: Contains 1 FAD-binding FR-type domain


    Find genes that share domains with OXNAD1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Enzyme Number (IUBMB): EC 1.-.-.-1

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0016491oxidoreductase activity IEA--
         
    Find genes that share ontologies with OXNAD1           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for OXNAD1:
     Increased S DNA content  Increased circadian period len 

         1 MGI phenotypic allele for Oxnad1 (no phenotypes)

    Find genes that share phenotypes with OXNAD1           About GenesLikeMe

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for OXNAD1

    miRNA
    Products:
        
    miRTarBase miRNAs that target OXNAD1:
    hsa-mir-16-5p (MIRT031950), hsa-let-7b-5p (MIRT032479), hsa-mir-155-5p (MIRT020942), hsa-mir-375 (MIRT020012)

    Block miRNA regulation of human, mouse, rat OXNAD1 using miScript Target Protectors
    8 qRT-PCR Assays for microRNAs that regulate OXNAD1:
    hsa-miR-1290 hsa-miR-3671 hsa-miR-4272 hsa-miR-10b* hsa-miR-149 hsa-miR-138 hsa-miR-548q hsa-miR-548c-3p
    SwitchGear 3'UTR luciferase reporter plasmidOXNAD1 3' UTR sequence
    Inhib. RNA
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OXNAD1


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular2
    mitochondrion2
    cytosol1
    endoplasmic reticulum1
    nucleus1
    peroxisome1
    plasma membrane1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005739mitochondrion IEA--

    Find genes that share ontologies with OXNAD1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OXNAD1
    Interactions:

        Search GeneGlobe Interaction Network for OXNAD1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 9)

    Selected Interacting proteins for OXNAD1 (ENSP000002850834) via UniProtKB, MINT, STRING, and/or I2D (see all 9)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CYC1ENSP000003171594STRING: ENSP00000317159
    CDC23ENSP000003783504STRING: ENSP00000378350
    HCCSENSP000003265794STRING: ENSP00000326579
    FBLENSP000002218014STRING: ENSP00000221801
    UQCRC2ENSP000002683794STRING: ENSP00000268379
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--
    GO:0055114oxidation-reduction process ----

    Find genes that share ontologies with OXNAD1           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OXNAD1 (OXND1)

    1 HMDB Compound for OXNAD1    About this table
    CompoundSynonyms CAS #PubMed Ids
    FAD1H-Purin-6-amine flavin dinucleotide (see all 21)146-14-5--



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for OXNAD1 gene: 
    NM_138381.3  

    Unigene Cluster for OXNAD1:

    Oxidoreductase NAD-binding domain containing 1
    Hs.655449  [show with all ESTs]
    Unigene Representative Sequence: NM_138381
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000285083(uc010her.2 uc003caw.3 uc003cax.3) ENST00000605932
    ENST00000442255 ENST00000435829 ENST00000486267 ENST00000452581 ENST00000606098
    ENST00000607329 ENST00000544043(uc011awb.2)
    miRNA
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    8 qRT-PCR Assays for microRNAs that regulate OXNAD1:
    hsa-miR-1290 hsa-miR-3671 hsa-miR-4272 hsa-miR-10b* hsa-miR-149 hsa-miR-138 hsa-miR-548q hsa-miR-548c-3p
    SwitchGear 3'UTR luciferase reporter plasmidOXNAD1 3' UTR sequence
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: OXNAD1 (NM_138381)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OXNAD1
    Primer
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    OriGene qPCR primer pairs and template standards for OXNAD1
    OriGene qSTAR qPCR primer pairs in human, mouse for OXNAD1
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat OXNAD1
      QuantiTect SYBR Green Assays in human, mouse, rat OXNAD1
      QuantiFast Probe-based Assays in human, mouse, rat OXNAD1

    Additional mRNA sequence: 

    AB209556.1 AK298829.1 AK307258.1 AL832787.1 BC007285.1 BC008322.1 BC018770.1 DQ364598.1 

    7 DOTS entries:

    DT.108593  DT.100812834  DT.100707404  DT.95373131  DT.91811449  DT.92044244  DT.120899654 

    Selected AceView cDNA sequences (see all 83):

    AI277233 BI752051 BE465433 AL514296 CR614426 BE301983 AI991563 BQ771797 
    CR603194 BX343102 BQ084090 AA558453 AI364281 NM_138381 CR610840 CR616590 
    BE891159 BC007285 BC018770 BM818310 BU621257 BX487275 BQ180851 BU633011 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for OXNAD1    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
    SP1:                    -                 -           -                                 
    SP2:                    -                 -                                             
    SP3:                                                                                    
    SP4:                    -                                                               
    SP5:                    -                                                               


    ECgene alternative splicing isoforms for OXNAD1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OXNAD1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACCCAAAGA
    OXNAD1 Expression
    About this image


    OXNAD1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Adipose (Muscoskeletal System)    fully expand to see all 2 entries
             Thoracic Perivascular Adipose
     
     Heart (Cardiovascular System)
    OXNAD1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OXNAD1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.655449
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for OXNAD1 gene from Selected species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Oxnad11 , 5 oxidoreductase NAD-binding domain containing 11, 5 84.31(n)1
    80.72(a)1
      14 (19.40 cM)5
    2188851  NM_145460.21  NP_663435.21 
     320853745 
    chicken
    (Gallus gallus)
    Aves OXNAD11 oxidoreductase NAD-binding domain containing 1 68.15(n)
    59.26(a)
      420644  NM_001199638.1  NP_001186567.1 
    lizard
    (Anolis carolinensis)
    Reptilia OXNAD16
    oxidoreductase NAD-binding domain containing 1
    58(a)
    1 ↔ 1
    6(35061614-35085590)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC689032 hypothetical protein MGC68903 71.69(n)    BC055995.1 
    zebrafish
    (Danio rerio)
    Actinopterygii oxnad11 oxidoreductase NAD-binding domain containing 1 60.72(n)
    57.62(a)
      558500  NM_001110456.1  NP_001103926.1 


    ENSEMBL Gene Tree for OXNAD1 (if available)
    TreeFam Gene Tree for OXNAD1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for OXNAD1 (see all 821)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs788296411,2
    C,F--16308561(+) ATGTCA/GTGATT 1 -- int11Minor allele frequency- G:0.20EA 120
    rs1849095461,2
    --16308653(+) CCTGCC/GTAATG 1 -- int10--------
    rs1495873011,2
    --16308665(+) ATCAGC/TAAGTT 1 -- int10--------
    rs1118664241,2
    C--16308803(+) CCTCTG/ATTATC 1 -- int12Minor allele frequency- A:0.02CSA WA 120
    rs1127629081,2
    C,F--16309002(+) TTCCTT/CTAACA 1 -- int14Minor allele frequency- C:0.03CSA NA EA 244
    rs113958441,2
    C--16309028(+) GTTGGG/-ACCTT 1 -- int11Minor allele frequency- -:0.00NA 2
    rs2005061101,2
    C--16309028(+) TGTGTG/TGGACC 1 -- int10--------
    rs1442871741,2
    C--16309065(+) AGTTGC/TCTGCC 1 -- int10--------
    rs1884523231,2
    --16309087(+) CTTGGC/TCGCCT 1 -- int10--------
    rs1387901681,2
    --16309191(+) TTATCA/GTACTC 1 -- int10--------

    HapMap Linkage Disequilibrium report for OXNAD1 (16306667 - 16391806 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for OXNAD1:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv876585CNV Gain21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing OXNAD1
    DNA2.0 Custom Variant and Variant Library Synthesis for OXNAD1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with OXNAD1           About GenesLikeMe

    Genetic Association Database (GAD): OXNAD1
    Human Genome Epidemiology (HuGE) Navigator: OXNAD1 (1 document)

    Export disorders for OXNAD1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OXNAD1 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OXNAD1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PubMed id 20877624)1, 4 Hendrickson S.L....O'Brien S.J. (PLoS ONE 2010)
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    3. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 92106 HGNC: 25128 AceView: MGC15763 Ensembl:ENSG00000154814 euGenes: HUgn92106
    ECgene: OXNAD1 H-InvDB: OXNAD1

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OXNAD1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OXNAD1 gene:
    Search GeneIP for patents involving OXNAD1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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