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Aliases for OXLD1 Gene

Subcategory (RNA class) for OXLD1 Gene

lncRNA

Aliases for OXLD1 Gene

  • Oxidoreductase-Like Domain Containing 1 2 3
  • C17orf90 3 4
  • Oxidoreductase-Like Domain-Containing Protein 1 3
  • Chromosome 17 Open Reading Frame 90 2

External Ids for OXLD1 Gene

ORGUL Members for OXLD1 Gene

Previous HGNC Symbols for OXLD1 Gene

  • C17orf90

Previous GeneCards Identifiers for OXLD1 Gene

  • GC17M079633

Summaries for OXLD1 Gene

GeneCards Summary for OXLD1 Gene

OXLD1 (Oxidoreductase-Like Domain Containing 1) is a Protein Coding gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXLD1 Gene

Genomics for OXLD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for OXLD1 Gene

Start:
81,665,036 bp from pter
End:
81,666,635 bp from pter
Size:
1,600 bases
Orientation:
Minus strand

Genomic View for OXLD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OXLD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXLD1 Gene

No data available for Regulatory Elements for OXLD1 Gene

Proteins for OXLD1 Gene

  • Protein details for OXLD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5BKU9-OXLD1_HUMAN
    Recommended name:
    Oxidoreductase-like domain-containing protein 1
    Protein Accession:
    Q5BKU9
    Secondary Accessions:
    • A6ND24

    Protein attributes for OXLD1 Gene

    Size:
    147 amino acids
    Molecular mass:
    15855 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OXLD1 Gene

Proteomics data for OXLD1 Gene at MOPED

Post-translational modifications for OXLD1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXLD1 Gene

Domains for OXLD1 Gene

Protein Domains for OXLD1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5BKU9

UniProtKB/Swiss-Prot:

OXLD1_HUMAN :
  • Q5BKU9
Domain:
  • Contains 1 Oxidoreductase-like domain.
genes like me logo Genes that share domains with OXLD1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for OXLD1 Gene

Function for OXLD1 Gene

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OXLD1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OXLD1 Gene

Localization for OXLD1 Gene

Gene Ontology (GO) - Cellular Components for OXLD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with OXLD1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for OXLD1 Gene

Pathways for OXLD1 Gene

SuperPathways for OXLD1 Gene

No Data Available

Interacting Proteins for OXLD1 Gene

Gene Ontology (GO) - Biological Process for OXLD1 Gene

None

No data available for Pathways by source for OXLD1 Gene

Transcripts for OXLD1 Gene

mRNA/cDNA for OXLD1 Gene

(4) Additional mRNA sequences :
(4) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OXLD1 Gene

Oxidoreductase-like domain containing 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OXLD1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for OXLD1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OXLD1 Gene

No ASD Table

Relevant External Links for OXLD1 Gene

GeneLoc Exon Structure for
OXLD1
ECgene alternative splicing isoforms for
OXLD1

Expression for OXLD1 Gene

mRNA expression in normal human tissues for OXLD1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for OXLD1 Gene

SOURCE GeneReport for Unigene cluster for OXLD1 Gene Hs.405942

genes like me logo Genes that share expressions with OXLD1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OXLD1 Gene

Orthologs for OXLD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for OXLD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OXLD1 35
  • 99.77 (n)
  • 99.32 (a)
OXLD1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OXLD1 35
  • 78.01 (n)
  • 71.63 (a)
OXLD1 36
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OXLD1 35
  • 78.46 (n)
  • 68.03 (a)
OXLD1 36
  • 62 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Oxld1 35
  • 72.26 (n)
  • 63.36 (a)
Oxld1 16
Oxld1 36
  • 41 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia OXLD1 36
  • 59 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii oxld1 36
  • 34 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG5500 36
  • 27 (a)
OneToOne
Species with no ortholog for OXLD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for OXLD1 Gene

ENSEMBL:
Gene Tree for OXLD1 (if available)
TreeFam:
Gene Tree for OXLD1 (if available)

Paralogs for OXLD1 Gene

No data available for Paralogs for OXLD1 Gene

Variants for OXLD1 Gene

Sequence variations from dbSNP and Humsavar for OXLD1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs7502802 -- 81,664,559(+) ACTCT(C/T)GTCAC downstream-variant-500B
rs189640202 -- 81,664,651(+) TTACA(A/G)GCGCC downstream-variant-500B
rs534608125 -- 81,664,560(+) CTCTC(A/G)TCACC downstream-variant-500B
rs538936620 -- 81,664,672(+) CCTGG(C/T)TAATT downstream-variant-500B
rs557715972 -- 81,664,710(+) CACCA(C/T)GTTGG downstream-variant-500B

Relevant External Links for OXLD1 Gene

HapMap Linkage Disequilibrium report
OXLD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OXLD1 Gene

Disorders for OXLD1 Gene

No disorders were found for OXLD1 Gene.

No data available for UniProtKB/Swiss-Prot for OXLD1 Gene

Publications for OXLD1 Gene

  1. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 3
  2. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for OXLD1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate OXLD1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for OXLD1
    • Block miRNA regulation of OXLD1 using miScript Target Protectors

    Sources for OXLD1 Gene

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