Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OXCT2P1 Gene

Aliases for OXCT2P1 Gene

  • 3-Oxoacid CoA-Transferase 2 Pseudogene 1 2 3 5
  • 3-Oxoacid CoA Transferase 2 Pseudogene 2 3
  • Scot-T Pseudogene 3
  • OXCT2P 3

External Ids for OXCT2P1 Gene

Previous HGNC Symbols for OXCT2P1 Gene

  • OXCT2P

Previous GeneCards Identifiers for OXCT2P1 Gene

  • GC01P039981
  • GC01P038099

Summaries for OXCT2P1 Gene

GeneCards Summary for OXCT2P1 Gene

OXCT2P1 (3-Oxoacid CoA-Transferase 2 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXCT2P1 Gene

Genomics for OXCT2P1 Gene

Regulatory Elements for OXCT2P1 Gene

Enhancers for OXCT2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F039539 1.3 FANTOM5 Ensembl ENCODE 15.3 +26.2 26175 2.3 BCOR SMARCA5 ZNF146 ZMYM3 ZNF121 ZNF316 KDM1A MAFK EMSY PABPC4 OXCT2P1 LOC101929516 SNORA55 OXCT2 MFSD2A ENSG00000182109 PIR37850
GH01F039182 1.7 FANTOM5 Ensembl ENCODE 11.2 -324.1 -324130 16.1 HDGF PKNOX1 WRNIP1 SIN3A FEZF1 ZNF2 CBX5 ZNF143 FOS DEK PPIEL MACF1 KIAA0754 ENSG00000226438 RNU6-608P MYCBP OXCT2P1 LOC101929516 PABPC4 BMP8B
GH01F039573 1.2 ENCODE 15.7 +60.6 60551 4.1 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC PPIEL OXCT2P1 PABPC4 OXCT2 RRAGC GC01M039568 GC01M039569 SNORA55
GH01F039609 1.1 Ensembl ENCODE 16.9 +95.1 95129 1.1 CBX3 ZNF48 RAD21 ZNF2 CHAMP1 ZNF143 EGR2 THAP11 ZNF263 HCFC1 OXCT2P1 HEYL ENSG00000225903 PABPC4 NT5C1A HPCAL4 PPIE GC01M039576
GH01F039391 1.7 FANTOM5 Ensembl ENCODE 10.7 -118.6 -118625 10.2 HDGF PKNOX1 ARNT ARID4B SIN3A FOS DEK ZNF263 SP5 JUNB PPIEL PABPC4 ENSG00000182109 LOC101929516 SNORA55 OXCT2P1 MYCBP KIAA0754 MACF1 BMP8A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Promoters for OXCT2P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000076533 637 1401 BCOR HDAC1 ESRRA ZMYM3 CTBP1 GATA3 GATA2 ETV6 RNF2 NRF1

Genomic Location for OXCT2P1 Gene

Chromosome:
1
Start:
39,514,863 bp from pter
End:
39,516,667 bp from pter
Size:
1,805 bases
Orientation:
Plus strand

Genomic View for OXCT2P1 Gene

Genes around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT2P1 Gene

Proteins for OXCT2P1 Gene

Post-translational modifications for OXCT2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT2P1 Gene

Domains & Families for OXCT2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OXCT2P1 Gene

Function for OXCT2P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT2P1 Gene

Localization for OXCT2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OXCT2P1 Gene

Pathways & Interactions for OXCT2P1 Gene

SuperPathways for OXCT2P1 Gene

No Data Available

Interacting Proteins for OXCT2P1 Gene

Gene Ontology (GO) - Biological Process for OXCT2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OXCT2P1 Gene

Transcripts for OXCT2P1 Gene

mRNA/cDNA for OXCT2P1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT2P1 Gene

No ASD Table

Relevant External Links for OXCT2P1 Gene

GeneLoc Exon Structure for
OXCT2P1
ECgene alternative splicing isoforms for
OXCT2P1

Expression for OXCT2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OXCT2P1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT2P1 Gene

This gene is overexpressed in Testis (x9.9) and Heart - Atrial Appendage (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of OXCT2P1 Gene:

OXCT2P1
genes like me logo Genes that share expression patterns with OXCT2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OXCT2P1 Gene

Orthologs for OXCT2P1 Gene

Evolution for OXCT2P1 Gene

ENSEMBL:
Gene Tree for OXCT2P1 (if available)
TreeFam:
Gene Tree for OXCT2P1 (if available)

No data available for Orthologs for OXCT2P1 Gene

Paralogs for OXCT2P1 Gene

No data available for Paralogs for OXCT2P1 Gene

Variants for OXCT2P1 Gene

Sequence variations from dbSNP and Humsavar for OXCT2P1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111482114 -- 39,515,858(+) CAGCT(C/G/T)TGGAA intron-variant, nc-transcript-variant
rs1153003 -- 39,513,327(+) TTAAT(A/G)TATGC intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime
rs138950509 -- 39,516,765(+) AGAGC(A/G)TGCAC intron-variant, downstream-variant-500B
rs140684921 -- 39,517,117(+) AGTAG(C/T)TGGGA intron-variant, downstream-variant-500B
rs145114482 -- 39,515,068(+) CCGGC(C/T)CCGTG intron-variant, nc-transcript-variant

Relevant External Links for OXCT2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OXCT2P1 Gene

Disorders for OXCT2P1 Gene

Relevant External Links for OXCT2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OXCT2P1

No disorders were found for OXCT2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT2P1 Gene

Publications for OXCT2P1 Gene

  1. Cloning and characterization of a human orthologue of testis-specific succinyl CoA:3-oxo acid CoA transferase (Scot-t) cDNA. (PMID: 11756565) Tanaka H. … Nishimune Y. (Mol. Hum. Reprod. 2002) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OXCT2P1 Gene

Sources for OXCT2P1 Gene

Content
Loading form....