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Aliases for OXCT2P1 Gene

Aliases for OXCT2P1 Gene

  • 3-Oxoacid CoA-Transferase 2 Pseudogene 1 2 3 5
  • 3-Oxoacid CoA Transferase 2 Pseudogene 2 3
  • Scot-T Pseudogene 3
  • OXCT2P 3

External Ids for OXCT2P1 Gene

Previous HGNC Symbols for OXCT2P1 Gene

  • OXCT2P

Previous GeneCards Identifiers for OXCT2P1 Gene

  • GC01P039981
  • GC01P038099

Summaries for OXCT2P1 Gene

GeneCards Summary for OXCT2P1 Gene

OXCT2P1 (3-Oxoacid CoA-Transferase 2 Pseudogene 1) is a Pseudogene.

Additional gene information for OXCT2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXCT2P1 Gene

Genomics for OXCT2P1 Gene

GeneHancer (GH) Regulatory Elements for OXCT2P1 Gene

Promoters and enhancers for OXCT2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I039513 Enhancer 0.6 Ensembl dbSUPER 555.7 +0.4 386 2.9 IKZF1 EZH2 OXCT2P1 GC01P039520 BMP8A
GH01I039573 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 15.7 +60.6 60550 4.1 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A YY1 POLR2B ZNF766 ZNF213 PABPC4 OXCT2P1 PPIE OXCT2 RRAGC GC01M039569 GC01M039576 SNORA55 GC01M039568
GH01I039404 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -105.9 -105937 8.2 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 DEK MACF1 OXCT2P1 ENSG00000226438 BMP8B KIAA0754 PIR47449 GC01P039381 BMP8A
GH01I040372 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.9 +861.0 860990 5.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 SMAP2 PPIEL EXO5 PPIE TRIT1 ENSG00000259943 ENSG00000182109 NFYC-AS1 RLF NFYC
GH01I040256 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 9.9 +743.0 742950 3.2 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ENSG00000259943 ZMPSTE24 PPIE PPIEL EXO5 TRIT1 RLF NFYC-AS1 NFYC LOC105378672
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OXCT2P1 Gene

Genomic Locations for OXCT2P1 Gene
chr1:39,514,863-39,516,667
(GRCh38/hg38)
Size:
1,805 bases
Orientation:
Plus strand
chr1:39,980,535-39,982,339
(GRCh37/hg19)

Genomic View for OXCT2P1 Gene

Genes around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT2P1 Gene

Proteins for OXCT2P1 Gene

Post-translational modifications for OXCT2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT2P1 Gene

Domains & Families for OXCT2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OXCT2P1 Gene

Function for OXCT2P1 Gene

Phenotypes From GWAS Catalog for OXCT2P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT2P1 Gene

Localization for OXCT2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT2P1 Gene

Pathways & Interactions for OXCT2P1 Gene

SuperPathways for OXCT2P1 Gene

No Data Available

Interacting Proteins for OXCT2P1 Gene

Gene Ontology (GO) - Biological Process for OXCT2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OXCT2P1 Gene

Drugs & Compounds for OXCT2P1 Gene

No Compound Related Data Available

Transcripts for OXCT2P1 Gene

mRNA/cDNA for OXCT2P1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT2P1 Gene

No ASD Table

Relevant External Links for OXCT2P1 Gene

GeneLoc Exon Structure for
OXCT2P1
ECgene alternative splicing isoforms for
OXCT2P1

Expression for OXCT2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OXCT2P1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT2P1 Gene

This gene is overexpressed in Testis (x9.9) and Heart - Atrial Appendage (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of OXCT2P1 Gene:

OXCT2P1
genes like me logo Genes that share expression patterns with OXCT2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT2P1 Gene

Orthologs for OXCT2P1 Gene

Evolution for OXCT2P1 Gene

ENSEMBL:
Gene Tree for OXCT2P1 (if available)
TreeFam:
Gene Tree for OXCT2P1 (if available)

No data available for Orthologs for OXCT2P1 Gene

Paralogs for OXCT2P1 Gene

No data available for Paralogs for OXCT2P1 Gene

Variants for OXCT2P1 Gene

Sequence variations from dbSNP and Humsavar for OXCT2P1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1003180465 -- 39,516,160(+) G/A non_coding_transcript_variant
rs1005069628 -- 39,515,445(+) C/T non_coding_transcript_variant
rs1005164417 -- 39,515,977(+) G/C non_coding_transcript_variant
rs1006070423 -- 39,514,393(+) TGATG/TG upstream_transcript_variant
rs1006159282 -- 39,514,687(+) C/A upstream_transcript_variant

Additional Variant Information for OXCT2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OXCT2P1 Gene

Disorders for OXCT2P1 Gene

Additional Disease Information for OXCT2P1

No disorders were found for OXCT2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT2P1 Gene

Publications for OXCT2P1 Gene

  1. Cloning and characterization of a human orthologue of testis-specific succinyl CoA: 3-oxo acid CoA transferase (Scot-t) cDNA. (PMID: 11756565) Tanaka H … Nishimune Y (Molecular human reproduction 2002) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for OXCT2P1 Gene

Sources for OXCT2P1 Gene

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