Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OXCT2P1 Gene

Aliases for OXCT2P1 Gene

  • 3-Oxoacid CoA-Transferase 2 Pseudogene 1 2 3 5
  • 3-Oxoacid CoA Transferase 2 Pseudogene 2 3
  • Scot-T Pseudogene 3
  • OXCT2P 3

External Ids for OXCT2P1 Gene

Previous HGNC Symbols for OXCT2P1 Gene

  • OXCT2P

Previous GeneCards Identifiers for OXCT2P1 Gene

  • GC01P039981
  • GC01P038099

Summaries for OXCT2P1 Gene

GeneCards Summary for OXCT2P1 Gene

OXCT2P1 (3-Oxoacid CoA-Transferase 2 Pseudogene 1) is a Pseudogene.

Additional gene information for OXCT2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXCT2P1 Gene

Genomics for OXCT2P1 Gene

Regulatory Elements for OXCT2P1 Gene

Enhancers for OXCT2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H039182 2 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -324.4 -324362 15 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF143 FOS MACF1 KIAA0754 ENSG00000226438 PPIEL RNU6-608P OXCT2P1 TRIT1 PPIE PABPC4 BMP8B
GH01H039404 2 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -105.9 -105938 8 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 BRCA1 ZNF2 YY1 ETS1 OXCT2P1 ENSG00000226438 BMP8B KIAA0754 PIR47449 BMP8A
GH01H039391 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.8 -118.6 -118625 10 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YY1 ZNF766 FOS DEK LOC101929516 PPIEL SNORA55 PABPC4 OXCT2P1 KIAA0754 MACF1 BMP8A BMP8B PIR47449
GH01H039573 1.3 ENCODE dbSUPER 15.7 +60.6 60551 4 HDGF PKNOX1 ARNT ARID4B SIN3A YY1 ZNF766 ZNF207 ZNF143 REST OXCT2P1 PABPC4 PPIE OXCT2 RRAGC GC01M039568 SNORA55 GC01M039569
GH01H039609 1.1 Ensembl ENCODE 16.9 +95.1 95129 1 RB1 ZNF2 RAD21 CHAMP1 ZNF143 RCOR1 EGR2 THAP11 HCFC1 KAT8 OXCT2P1 ENSG00000259943 HEYL ENSG00000225903 PABPC4 NT5C1A PPIE HPCAL4 GC01M039576
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OXCT2P1 Gene

Chromosome:
1
Start:
39,514,863 bp from pter
End:
39,516,667 bp from pter
Size:
1,805 bases
Orientation:
Plus strand

Genomic View for OXCT2P1 Gene

Genes around OXCT2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT2P1 Gene

Proteins for OXCT2P1 Gene

Post-translational modifications for OXCT2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT2P1 Gene

Domains & Families for OXCT2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OXCT2P1 Gene

Function for OXCT2P1 Gene

Phenotypes From GWAS Catalog for OXCT2P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for OXCT2P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT2P1 Gene

Localization for OXCT2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT2P1 Gene

Pathways & Interactions for OXCT2P1 Gene

SuperPathways for OXCT2P1 Gene

No Data Available

Interacting Proteins for OXCT2P1 Gene

Gene Ontology (GO) - Biological Process for OXCT2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OXCT2P1 Gene

Drugs & Compounds for OXCT2P1 Gene

No Compound Related Data Available

Transcripts for OXCT2P1 Gene

mRNA/cDNA for OXCT2P1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for OXCT2P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT2P1 Gene

No ASD Table

Relevant External Links for OXCT2P1 Gene

GeneLoc Exon Structure for
OXCT2P1
ECgene alternative splicing isoforms for
OXCT2P1

Expression for OXCT2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OXCT2P1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT2P1 Gene

This gene is overexpressed in Testis (x9.9) and Heart - Atrial Appendage (x7.1).

NURSA nuclear receptor signaling pathways regulating expression of OXCT2P1 Gene:

OXCT2P1
genes like me logo Genes that share expression patterns with OXCT2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT2P1 Gene

Orthologs for OXCT2P1 Gene

Evolution for OXCT2P1 Gene

ENSEMBL:
Gene Tree for OXCT2P1 (if available)
TreeFam:
Gene Tree for OXCT2P1 (if available)

No data available for Orthologs for OXCT2P1 Gene

Paralogs for OXCT2P1 Gene

No data available for Paralogs for OXCT2P1 Gene

Variants for OXCT2P1 Gene

Sequence variations from dbSNP and Humsavar for OXCT2P1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1003180465 -- 39,516,160(+) CTGGC(A/G)AACTG intron-variant, nc-transcript-variant
rs1005069628 -- 39,515,445(+) GGACC(C/T)TGGTC intron-variant, nc-transcript-variant
rs1005164417 -- 39,515,977(+) GGCCT(C/G)GGCCC intron-variant, nc-transcript-variant
rs1006070423 -- 39,514,393(+) CTTCC(-/TGA)TGGAG intron-variant, upstream-variant-2KB
rs1006159282 -- 39,514,687(+) CTGTG(A/C)CCTAC intron-variant, upstream-variant-2KB

Relevant External Links for OXCT2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OXCT2P1 Gene

Disorders for OXCT2P1 Gene

Relevant External Links for OXCT2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OXCT2P1

No disorders were found for OXCT2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT2P1 Gene

Publications for OXCT2P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  2. Cloning and characterization of a human orthologue of testis-specific succinyl CoA: 3-oxo acid CoA transferase (Scot-t) cDNA. (PMID: 11756565) Tanaka H … Nishimune Y (Molecular human reproduction 2002) 3 60

Products for OXCT2P1 Gene

Sources for OXCT2P1 Gene

Content
Loading form....