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Aliases for OXCT2 Gene

Aliases for OXCT2 Gene

  • 3-Oxoacid CoA Transferase 2 2 3
  • Testis-Specific Succinyl-CoA:3-Oxoacid CoA-Transferase 3 4
  • 3-Oxoacid CoA-Transferase 2A 3 4
  • EC 2.8.3.5 4 63
  • Succinyl-CoA:3-Ketoacid Coenzyme A Transferase 2, Mitochondrial 3
  • Succinyl-CoA:3-Ketoacid-Coenzyme A Transferase 2, Mitochondrial 3
  • Testis-Specific Succinyl CoA:3-Oxoacid CoA-Transferase 3
  • 3-Oxoacid-CoA Transferase 2A 3
  • EC 2.8.3 63
  • FLJ0030 6
  • FKSG25 3
  • SCOT-T 4
  • SCOTT 3

External Ids for OXCT2 Gene

Previous GeneCards Identifiers for OXCT2 Gene

  • GC01P039898
  • GC01M039238
  • GC01M039698
  • GC01M039648
  • GC01M039904
  • GC01M040007
  • GC01M040235
  • GC01M038353

Summaries for OXCT2 Gene

Entrez Gene Summary for OXCT2 Gene

  • OXCT2 is a testis-specific succinyl-CoA:3-oxoacid CoA transferase (EC 2.8.3.5), which catalyzes the reversible transfer of CoA from succinyl-CoA to acetoacetate in the first step of ketone body utilization. See also OXCT1 (MIM 601424).[supplied by OMIM, Mar 2008]

GeneCards Summary for OXCT2 Gene

OXCT2 (3-Oxoacid CoA Transferase 2) is a Protein Coding gene. Among its related pathways are Valine, leucine and isoleucine degradation and Butanoate metabolism. GO annotations related to this gene include 3-oxoacid CoA-transferase activity. An important paralog of this gene is OXCT1.

UniProtKB/Swiss-Prot for OXCT2 Gene

  • Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXCT2 Gene

Genomics for OXCT2 Gene

Regulatory Elements for OXCT2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for OXCT2 Gene

Start:
39,769,523 bp from pter
End:
39,771,348 bp from pter
Size:
1,826 bases
Orientation:
Minus strand

Genomic View for OXCT2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OXCT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT2 Gene

Proteins for OXCT2 Gene

  • Protein details for OXCT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BYC2-SCOT2_HUMAN
    Recommended name:
    Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial
    Protein Accession:
    Q9BYC2
    Secondary Accessions:
    • B2RBB4
    • Q5QPK4
    • Q8NHR1
    • Q9H1I4

    Protein attributes for OXCT2 Gene

    Size:
    517 amino acids
    Molecular mass:
    56140 Da
    Quaternary structure:
    • Homodimer.

neXtProt entry for OXCT2 Gene

Proteomics data for OXCT2 Gene at MOPED

Post-translational modifications for OXCT2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for OXCT2 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for OXCT2 Gene

Suggested Antigen Peptide Sequences for OXCT2 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BYC2

UniProtKB/Swiss-Prot:

SCOT2_HUMAN :
  • Q9BYC2
Family:
  • Belongs to the 3-oxoacid CoA-transferase family.
genes like me logo Genes that share domains with OXCT2: view

No data available for Gene Families for OXCT2 Gene

Function for OXCT2 Gene

Molecular function for OXCT2 Gene

UniProtKB/Swiss-Prot CatalyticActivity: Succinyl-CoA + a 3-oxo acid = succinate + a 3-oxoacyl-CoA.
UniProtKB/Swiss-Prot Function: Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (By similarity).

Enzyme Numbers (IUBMB) for OXCT2 Gene

Gene Ontology (GO) - Molecular Function for OXCT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008260 3-oxoacid CoA-transferase activity IEA --
GO:0008410 CoA-transferase activity --
genes like me logo Genes that share ontologies with OXCT2: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OXCT2

In Situ Assay Products

Flow Cytometry Products

No data available for Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OXCT2 Gene

Localization for OXCT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OXCT2 Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OXCT2 Gene COMPARTMENTS Subcellular localization image for OXCT2 gene
Compartment Confidence
mitochondrion 5

Gene Ontology (GO) - Cellular Components for OXCT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA 11756565
GO:0031514 motile cilium IDA 11756565
genes like me logo Genes that share ontologies with OXCT2: view

Pathways for OXCT2 Gene

genes like me logo Genes that share pathways with OXCT2: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

UniProtKB/Swiss-Prot Q9BYC2-SCOT2_HUMAN

  • Pathway: Ketone metabolism; succinyl-CoA degradation; acetoacetyl-CoA from succinyl-CoA: step 1/1

Interacting Proteins for OXCT2 Gene

Gene Ontology (GO) - Biological Process for OXCT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process --
GO:0046952 ketone body catabolic process IEA --
genes like me logo Genes that share ontologies with OXCT2: view

Compounds for OXCT2 Gene

(4) HMDB Compounds for OXCT2 Gene

Compound Synonyms Cas Number PubMed IDs
Acetoacetic acid
  • 3-Ketobutyrate
541-50-4
Acetoacetyl-CoA
  • 3-acetoacetyl-CoA
1420-36-6
Succinic acid
  • 1,2-Ethanedicarboxylate
110-15-6
Succinyl-CoA
  • Coenzyme A S-(hydrogen succinate)
604-98-8

(1) Drugbank Compounds for OXCT2 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Succinic acid
  • 1,2-Ethanedicarboxylic acid
110-15-6 target
genes like me logo Genes that share compounds with OXCT2: view

Transcripts for OXCT2 Gene

mRNA/cDNA for OXCT2 Gene

(27) Selected AceView cDNA sequences:
(7) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OXCT2 Gene

3-oxoacid CoA transferase 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OXCT2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT2 Gene

No ASD Table

Relevant External Links for OXCT2 Gene

GeneLoc Exon Structure for
OXCT2
ECgene alternative splicing isoforms for
OXCT2

Expression for OXCT2 Gene

mRNA expression in normal human tissues for OXCT2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for OXCT2 Gene

This gene is overexpressed in Testis (29.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for OXCT2 Gene

SOURCE GeneReport for Unigene cluster for OXCT2 Gene Hs.472491

mRNA Expression by UniProt/SwissProt for OXCT2 Gene

Q9BYC2-SCOT2_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expressions with OXCT2: view

In Situ Assay Products

Orthologs for OXCT2 Gene

This gene was present in the common ancestor of animals.

Orthologs for OXCT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OXCT2 35
  • 99.55 (n)
  • 99.03 (a)
cow
(Bos Taurus)
Mammalia LOC100297708 35
  • 81.88 (n)
  • 80.19 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 50 (a)
OneToMany
-- 36
  • 50 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Oxct2a 36
  • 75 (a)
OneToMany
Oxct2b 16
Oxct2b 36
  • 74 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 62 (a)
OneToMany
-- 36
  • 42 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC100365119 35
  • 77.28 (n)
  • 74.37 (a)
chicken
(Gallus gallus)
Aves OXCT1 36
  • 71 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 68 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii oxct1a 36
  • 67 (a)
ManyToMany
oxct1b 36
  • 64 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG1140 36
  • 56 (a)
OneToMany
CG1140 37
  • 59 (a)
worm
(Caenorhabditis elegans)
Secernentea C05C10.3 36
  • 54 (a)
OneToMany
C05C10.3 37
  • 57 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1452 36
  • 61 (a)
OneToMany
Species with no ortholog for OXCT2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for OXCT2 Gene

ENSEMBL:
Gene Tree for OXCT2 (if available)
TreeFam:
Gene Tree for OXCT2 (if available)

Paralogs for OXCT2 Gene

Paralogs for OXCT2 Gene

Selected SIMAP similar genes for OXCT2 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for OXCT2 Gene

genes like me logo Genes that share paralogs with OXCT2: view

Variants for OXCT2 Gene

Sequence variations from dbSNP and Humsavar for OXCT2 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
VAR_059134 -
VAR_059135 -

Structural Variations from Database of Genomic Variants (DGV) for OXCT2 Gene

Variant ID Type Subtype PubMed ID
nsv7177 OTHER Inversion 18451855
dgv15n27 CNV Gain 19166990
dgv215n71 CNV Loss 21882294
dgv49e1 CNV Complex 17122850

Relevant External Links for OXCT2 Gene

HapMap Linkage Disequilibrium report
OXCT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OXCT2 Gene

Disorders for OXCT2 Gene

No disorders were found for OXCT2 Gene.

No data available for UniProtKB/Swiss-Prot for OXCT2 Gene

Publications for OXCT2 Gene

  1. Cloning and characterization of a human orthologue of testis-specific succinyl CoA:3-oxo acid CoA transferase (Scot-t) cDNA. (PMID: 11756565) Tanaka H. … Nishimune Y. (Mol. Hum. Reprod. 2002) 2 3 4 23
  2. Characterization of long cDNA clones from human adult spleen. (PMID: 11214971) Hattori A. … Ohara O. (DNA Res. 2000) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for OXCT2 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
  • QIAGEN qRT-PCR Assays for microRNAs that regulate OXCT2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for OXCT2
    • Block miRNA regulation of OXCT2 using miScript Target Protectors

    Sources for OXCT2 Gene

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