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Aliases for OXCT1-AS1 Gene

Subcategory (RNA class) for OXCT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OXCT1-AS1 Gene

  • OXCT1 Antisense RNA 1 2 3 5
  • OXCT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OXCT1-AS1 Gene

Summaries for OXCT1-AS1 Gene

GeneCards Summary for OXCT1-AS1 Gene

OXCT1-AS1 (OXCT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OXCT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXCT1-AS1 Gene

Genomics for OXCT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for OXCT1-AS1 Gene

Promoters and enhancers for OXCT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I041869 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 +0.3 279 2.6 HDGF ARNT SIN3A ZNF2 YY1 POLR2B ZNF213 ZNF207 ZNF143 SP3 OXCT1 LOC102723752 OXCT1-AS1 FBXO4 C5orf51
GH05I041871 Enhancer 0.9 Ensembl ENCODE 550.8 +1.8 1843 0.4 ZBTB21 INSM2 MZF1 ZNF302 ZNF366 PRDM10 KLF8 ZBTB20 ZNF189 ZEB2 OXCT1 OXCT1-AS1 C5orf51 FBXO4 LOC102723752 RPS2P22
GH05I041903 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 18.2 +34.5 34453 2.5 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC C5orf51 FBXO4 SERBP1P6 OXCT1-AS1 CCDC152 GC05P041926 PIR36450
GH05I042422 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 9.8 +554.1 554095 2.6 PKNOX1 ATF1 ZFP64 SIN3A GLI4 ZNF2 YY1 ZNF121 GLIS2 KLF7 GHR ZNF131 OXCT1-AS1 C5orf51 ENSG00000250860
GH05I041921 Enhancer 0.6 ENCODE 10.8 +51.5 51460 0.9 JUN ZNF664 ATF4 SCRT2 IKZF1 NFE2 EMSY IKZF2 SPI1 GC05P041927 LOC100419715 PIR60775 OXCT1 OXCT1-AS1 FBXO4 C5orf51
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OXCT1-AS1 Gene

Genomic Locations for OXCT1-AS1 Gene
chr5:41,870,030-41,872,241
(GRCh38/hg38)
Size:
2,212 bases
Orientation:
Plus strand
chr5:41,870,132-41,871,059
(GRCh37/hg19)

Genomic View for OXCT1-AS1 Gene

Genes around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT1-AS1 Gene

Proteins for OXCT1-AS1 Gene

Post-translational modifications for OXCT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT1-AS1 Gene

Domains & Families for OXCT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OXCT1-AS1 Gene

Function for OXCT1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT1-AS1 Gene

Localization for OXCT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT1-AS1 Gene

Pathways & Interactions for OXCT1-AS1 Gene

SuperPathways for OXCT1-AS1 Gene

No Data Available

Interacting Proteins for OXCT1-AS1 Gene

Gene Ontology (GO) - Biological Process for OXCT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OXCT1-AS1 Gene

Drugs & Compounds for OXCT1-AS1 Gene

No Compound Related Data Available

Transcripts for OXCT1-AS1 Gene

mRNA/cDNA for OXCT1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT1-AS1 Gene

No ASD Table

Relevant External Links for OXCT1-AS1 Gene

GeneLoc Exon Structure for
OXCT1-AS1
ECgene alternative splicing isoforms for
OXCT1-AS1

Expression for OXCT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OXCT1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT1-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x6.0).
genes like me logo Genes that share expression patterns with OXCT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT1-AS1 Gene

Orthologs for OXCT1-AS1 Gene

Evolution for OXCT1-AS1 Gene

ENSEMBL:
Gene Tree for OXCT1-AS1 (if available)
TreeFam:
Gene Tree for OXCT1-AS1 (if available)

No data available for Orthologs for OXCT1-AS1 Gene

Paralogs for OXCT1-AS1 Gene

No data available for Paralogs for OXCT1-AS1 Gene

Variants for OXCT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OXCT1-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs138037654 likely-benign, Succinyl-CoA acetoacetate transferase deficiency 41,870,704(+) C/T intron_variant
rs182767661 uncertain-significance, Succinyl-CoA acetoacetate transferase deficiency 41,870,418(+) G/C intron_variant
rs1876654 benign, Succinyl-CoA acetoacetate transferase deficiency 41,870,573(+) T/C intron_variant
rs200129807 uncertain-significance, not specified, Succinyl-CoA acetoacetate transferase deficiency 41,870,363(+) G/A/C non_coding_transcript_variant
rs368390833 uncertain-significance, likely-benign, not provided, Succinyl-CoA acetoacetate transferase deficiency 41,870,267(+) CCCCC/CCCCCC/CCCCCCC intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OXCT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1096e214 CNV gain 21293372
esv2762518 CNV loss 21179565
esv3604851 CNV gain 21293372
nsv4811 CNV deletion 18451855
nsv830271 CNV loss 17160897
nsv830272 CNV gain 17160897
nsv830273 CNV gain 17160897

Additional Variant Information for OXCT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OXCT1-AS1 Gene

Disorders for OXCT1-AS1 Gene

Additional Disease Information for OXCT1-AS1

No disorders were found for OXCT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT1-AS1 Gene

Publications for OXCT1-AS1 Gene

No publications were found for OXCT1-AS1 Gene.

Products for OXCT1-AS1 Gene

Sources for OXCT1-AS1 Gene

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