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Aliases for OXCT1-AS1 Gene

Subcategory (RNA class) for OXCT1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OXCT1-AS1 Gene

  • OXCT1 Antisense RNA 1 2 3 5
  • OXCT1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OXCT1-AS1 Gene

Summaries for OXCT1-AS1 Gene

GeneCards Summary for OXCT1-AS1 Gene

OXCT1-AS1 (OXCT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OXCT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OXCT1-AS1 Gene

Genomics for OXCT1-AS1 Gene

Regulatory Elements for OXCT1-AS1 Gene

Enhancers for OXCT1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H041903 1.2 ENCODE 18.1 +34.5 34453 2 MLX DMAP1 YY1 ZNF143 SP3 NFYC ZFP41 MEF2D ZNF610 ZNF585B FBXO4 SERBP1P6 OXCT1-AS1 ENSG00000260786 TCP1P2 C5orf51 CCDC152 PIR36450 GC05P041924
GH05H042422 1.2 ENCODE dbSUPER 9.8 +554.1 554095 2 PKNOX1 ATF1 ZFP64 SIN3A GLI4 ZNF2 YY1 ZNF121 GLIS2 ZNF143 ZNF131 OXCT1-AS1 C5orf51 GHR ENSG00000250860
GH05H041921 0.6 ENCODE 10.7 +51.5 51460 0 ZNF664 JUN SCRT2 IKZF1 NFE2 EMSY IKZF2 SPI1 OXCT1 OXCT1-AS1 FBXO4 LOC100419715
GH05H041922 0.5 Ensembl 10.7 +52.1 52071 0 ZNF664 JUN NFE2 EMSY OXCT1 OXCT1-AS1 LOC100419715 FBXO4
GH05H041869 1 ENCODE 0.7 +0.3 280 2 HDGF ATF1 SIN3A GLI4 BRCA1 ZNF2 YY1 ZNF121 GLIS2 ELK1 FBXO4 C5orf51 OXCT1 OXCT1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for OXCT1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000180078 70 1401 HDGF ATF1 GLI4 BRCA1 ZNF2 ZNF121 GLIS2 ZNF143 ZNF207 KLF7

Genomic Location for OXCT1-AS1 Gene

Chromosome:
5
Start:
41,870,030 bp from pter
End:
41,872,241 bp from pter
Size:
2,212 bases
Orientation:
Plus strand

Genomic View for OXCT1-AS1 Gene

Genes around OXCT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OXCT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OXCT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OXCT1-AS1 Gene

Proteins for OXCT1-AS1 Gene

Post-translational modifications for OXCT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OXCT1-AS1 Gene

Domains & Families for OXCT1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OXCT1-AS1 Gene

Function for OXCT1-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for OXCT1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OXCT1-AS1 Gene

Localization for OXCT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OXCT1-AS1 Gene

Pathways & Interactions for OXCT1-AS1 Gene

SuperPathways for OXCT1-AS1 Gene

No Data Available

Interacting Proteins for OXCT1-AS1 Gene

Gene Ontology (GO) - Biological Process for OXCT1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OXCT1-AS1 Gene

Drugs & Compounds for OXCT1-AS1 Gene

No Compound Related Data Available

Transcripts for OXCT1-AS1 Gene

mRNA/cDNA for OXCT1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for OXCT1-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for OXCT1-AS1 Gene

No ASD Table

Relevant External Links for OXCT1-AS1 Gene

GeneLoc Exon Structure for
OXCT1-AS1
ECgene alternative splicing isoforms for
OXCT1-AS1

Expression for OXCT1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OXCT1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OXCT1-AS1 Gene

This gene is overexpressed in Heart - Left Ventricle (x6.0).
genes like me logo Genes that share expression patterns with OXCT1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OXCT1-AS1 Gene

Orthologs for OXCT1-AS1 Gene

Evolution for OXCT1-AS1 Gene

ENSEMBL:
Gene Tree for OXCT1-AS1 (if available)
TreeFam:
Gene Tree for OXCT1-AS1 (if available)

No data available for Orthologs for OXCT1-AS1 Gene

Paralogs for OXCT1-AS1 Gene

No data available for Paralogs for OXCT1-AS1 Gene

Variants for OXCT1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OXCT1-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs138037654 Likely benign 41,870,704(+) GTGGC(C/T)GCCTC intron-variant, upstream-variant-2KB
rs75587220 Likely benign 41,870,550(+) GGGGC(C/T)CCGGC intron-variant, nc-transcript-variant, utr-variant-5-prime
rs182767661 Uncertain significance 41,870,418(+) GGTGC(C/G)CGACT intron-variant, nc-transcript-variant, utr-variant-5-prime
rs200129807 Uncertain significance 41,870,363(+) TCTTC(A/C/G)GGCGG intron-variant, nc-transcript-variant, utr-variant-5-prime
rs368390833 Uncertain significance 41,870,266(+) CTCTT(-/A/C/CC)CCCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OXCT1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1096e214 CNV gain 21293372
esv2762518 CNV loss 21179565
esv3604851 CNV gain 21293372
nsv4811 CNV deletion 18451855
nsv830271 CNV loss 17160897
nsv830272 CNV gain 17160897
nsv830273 CNV gain 17160897

Relevant External Links for OXCT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OXCT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OXCT1-AS1 Gene

Disorders for OXCT1-AS1 Gene

Relevant External Links for OXCT1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OXCT1-AS1

No disorders were found for OXCT1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OXCT1-AS1 Gene

Publications for OXCT1-AS1 Gene

No publications were found for OXCT1-AS1 Gene.

Products for OXCT1-AS1 Gene

Sources for OXCT1-AS1 Gene

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