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OVOL3 Gene

protein-coding   GIFtS: 28
GCID: GC19P036603

Ovo-Like Zinc Finger 3

(Previous name: ovo-like 3 (Drosophila))
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ovo-Like Zinc Finger 31 2
Ovo-Like 3 (Drosophila)1
HOVO32
OVO Homolog-Like 32
Ovo-Like 32
Putative Transcription Factor Ovo-Like Protein 32

External Ids:    HGNC: 141861   Entrez Gene: 7283612   Ensembl: ENSG000001052617   UniProtKB: O001103   

Export aliases for OVOL3 gene to outside databases

Previous GC identifers: GC19P037241 GC19P037050 GC19P041278 GC19U900376


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for OVOL3 Gene:
OVOL3 (ovo-like zinc finger 3) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and nucleic acid binding. An important paralog of this gene is OVOL2.

UniProtKB/Swiss-Prot: OVOL3_HUMAN, O00110
Function: May act as a transcription regulator (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011109.17  
Regulatory elements:
   Search for regulatory transcription factor binding sites for OVOL3
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OVOL3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.12   Ensembl cytogenetic band:  19q13.12   HGNC cytogenetic band: 19q13.12

OVOL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OVOL3 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P036603:  view genomic region     (about GC identifiers)

Start:
36,602,104 bp from pter      End:
36,604,613 bp from pter
Size:
2,510 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: OVOL3_HUMAN, O00110 (See protein sequence)
Recommended Name: Putative transcription factor ovo-like protein 3  
Size: 214 amino acids; 23826 Da
Caution: Could be the product of a pseudogene
Sequence caution: Sequence=AAB51180.1; Type=Erroneous gene model prediction;

Explore the universe of human proteins at neXtProt for OVOL3: NX_O00110

Explore proteomics data for OVOL3 at MOPED


See OVOL3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001257877.1  
ENSEMBL proteins: 
 ENSP00000465620   ENSP00000464809   ENSP00000262637  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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4 InterPro protein domains:
 IPR015880 Znf_C2H2-like
 IPR027775 C2H2_Znf_fam
 IPR013087 Znf_C2H2/integrase_DNA-bd
 IPR007087 Znf_C2H2

Graphical View of Domain Structure for InterPro Entry O00110

ProtoNet protein and cluster: O00110

UniProtKB/Swiss-Prot: OVOL3_HUMAN, O00110
Similarity: Belongs to the krueppel C2H2-type zinc-finger protein family
Similarity: Contains 4 C2H2-type zinc fingers


Find genes that share domains with OVOL3           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: OVOL3_HUMAN, O00110
Function: May act as a transcription regulator (By similarity)

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003676nucleic acid binding IEA--
GO:0003700sequence-specific DNA binding transcription factor activity IEA--
GO:0046872metal ion binding IEA--
     
Find genes that share ontologies with OVOL3           About GenesLikeMe


Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
OVOL3_HUMAN, O00110: Nucleus (Potential)

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OVOL3
Interactions:

    Search GeneGlobe Interaction Network for OVOL3

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for OVOL3 (ENSP000002626374) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
DHX9ENSP000003565204STRING: ENSP00000356520
--ENSP000003821284STRING: ENSP00000382128
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Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006351transcription, DNA-templated IEA--

Find genes that share ontologies with OVOL3           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for OVOL3 gene: 
NM_001270948.1  

Unigene Cluster for OVOL3:

Ovo-like 3 (Drosophila)
Hs.143920  [show with all ESTs]
Unigene Representative Sequence: NM_001270948
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000585332 ENST00000586670 ENST00000262637
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1 DOTS entry:

DT.75107026 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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OVOL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
OVOL3 Expression
About this image

OVOL3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

OVOL3 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.143920
    Custom PCR Arrays for OVOL3
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for OVOL3 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ovol31 , 5 OVO homolog-like 3 (Drosophila)1, 5 83.78(n)1
88.24(a)1
  7 (17.34 cM)5
3818671  XM_355880.91  XP_355880.91 
 302334395 
tropical clawed frog
(Xenopus tropicalis)
Amphibia LOC1017306931 putative transcription factor Ovo-like 1-like 57.83(n)
59.64(a)
  101730693  XM_004917394.1  XP_004917451.1 
zebrafish
(Danio rerio)
Actinopterygii OVOL36
ovo-like zinc finger 3
45(a)
1 ↔ 1
10(48282-54537) ENSDARG00000079995
fruit fly
(Drosophila melanogaster)
Insecta ovo6
ovo
7(a)
1 → many
X(4942330-4964962)
worm
(Caenorhabditis elegans)
Secernentea lin-486
Protein LIN-48 (lin-48) mRNA, complete cds
27(a)
1 → many
III(3745461-3747348) WBGene00003033


ENSEMBL Gene Tree for OVOL3 (if available)
TreeFam Gene Tree for OVOL3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for OVOL3 gene
OVOL22  OVOL12  
Selected SIMAP similar genes for OVOL3 using alignment to 4 protein entries:     OVOL3_HUMAN (see all proteins) (see all similar genes):
ZNF569    SALL2    ZNF341    ZNF783    OVOL2    OVOL1
ZNF653    ZNF683    SALL3    ZNF285    ZNF285A    ZNF775
SALL1    ZBTB47    ZNF55    HZF16    ZNF652    ZNF564

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for OVOL3 (see all 94)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1861578741,2
--36600147(+) GCTTAC/TCCAGG 1 -- us2k10--------
rs1906818771,2
--36600191(+) GCCTGA/TTCGGG 1 -- us2k10--------
rs1513165671,2
--36600307(+) TTACGC/TGATCA 1 -- us2k10--------
rs1166879621,2
C,F--36600308(+) TACGCG/AATCAT 1 -- us2k11Minor allele frequency- A:0.02WA 118
rs1143738101,2
C,F--36600356(+) AGTTGC/ACAGGC 1 -- us2k11Minor allele frequency- A:0.01WA 118
rs1827526021,2
--36600361(+) CCAGGA/CGCAAT 1 -- us2k10--------
rs1169901011,2
F--36600362(+) CAGGCG/ACAATG 1 -- us2k11Minor allele frequency- A:0.01NA 120
rs1124500901,2
F--36600371(+) TGGCTC/TACGCC 1 -- us2k11Minor allele frequency- T:0.50CSA 2
rs1865008171,2
--36600374(+) CTCACG/TCCTGT 1 -- us2k10--------
rs1503899051,2
--36600506(+) TGGTGC/TGCACC 1 -- us2k10--------

HapMap Linkage Disequilibrium report for OVOL3 (36602104 - 36604613 bp)

Structural Variations
      Database of Genomic Variants (DGV) variations for OVOL3: --
Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing OVOL3
DNA2.0 Custom Variant and Variant Library Synthesis for OVOL3

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for OVOL3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with OVOL3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)1, 2 Grimwood J.... Lucas S.M. (Nature 2004)
  2. Molecular phylogeny of OVOL genes illustrates a conserved C2H2 zinc finger domain coupled by hypervariable unstructured regions. (PubMed id 22737237)1 Kumar A....Grapputo A. (PLoS ONE 2012)
  3. Ovol2, a mammalian homolog of Drosophila ovo: gene structure, chromosomal mapping, and aberrant expression in blind-sterile mice. (PubMed id 12213202)1 Li B.... Dai X. (Genomics 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 728361 HGNC: 14186 Ensembl:ENSG00000105261 euGenes: HUgn728361 ECgene: OVOL3
H-InvDB: OVOL3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for OVOL3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for OVOL3 gene:
Search GeneIP for patents involving OVOL3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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