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Aliases for OVOL1 Gene

Aliases for OVOL1 Gene

  • Ovo-Like Zinc Finger 1 2 3
  • Ovo-Like 1(Drosophila) 2 3
  • HOVO1 3 4
  • Putative Transcription Factor Ovo-Like 1 3
  • Ovo (Drosophila) Homolog-Like 1 2
  • Ovo Homolog-Like 1 3

External Ids for OVOL1 Gene

Summaries for OVOL1 Gene

Entrez Gene Summary for OVOL1 Gene

  • This gene encodes a putative zinc finger containing transcription factor that is highly similar to homologous protein in Drosophila and mouse. Based on known functions in these species, this protein is likely involved in hair formation and spermatogenesis in human as well. [provided by RefSeq, Aug 2011]

GeneCards Summary for OVOL1 Gene

OVOL1 (Ovo-Like Zinc Finger 1) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding RNA polymerase II transcription factor activity and RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription. An important paralog of this gene is OVOL2.

UniProtKB/Swiss-Prot for OVOL1 Gene

  • Putative transcription factor. Involved in hair formation and spermatogenesis. May function in the differentiation and/or maintenance of the urogenital system (By similarity).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OVOL1 Gene

Genomics for OVOL1 Gene

Genomic Location for OVOL1 Gene

Start:
65,787,022 bp from pter
End:
65,797,219 bp from pter
Size:
10,198 bases
Orientation:
Plus strand

Genomic View for OVOL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OVOL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OVOL1 Gene

Regulatory Elements for OVOL1 Gene

Proteins for OVOL1 Gene

  • Protein details for OVOL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14753-OVOL1_HUMAN
    Recommended name:
    Putative transcription factor Ovo-like 1
    Protein Accession:
    O14753
    Secondary Accessions:
    • Q6PCB1

    Protein attributes for OVOL1 Gene

    Size:
    267 amino acids
    Molecular mass:
    30259 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OVOL1 Gene

Proteomics data for OVOL1 Gene at MOPED

Post-translational modifications for OVOL1 Gene

No Post-translational modifications

Other Protein References for OVOL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for OVOL1 Gene

Domains for OVOL1 Gene

Gene Families for OVOL1 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

UniProtKB/Swiss-Prot:

OVOL1_HUMAN
Similarity:
  • Contains 4 C2H2-type zinc fingers.:
    • O14753
genes like me logo Genes that share domains with OVOL1: view

Function for OVOL1 Gene

Molecular function for OVOL1 Gene

GENATLAS Biochemistry: Drosophila OVO gene homolog,female germline-specific nuclear protein,expressed in placenta,fetal kidney,pancreas
UniProtKB/Swiss-Prot Function: Putative transcription factor. Involved in hair formation and spermatogenesis. May function in the differentiation and/or maintenance of the urogenital system (By similarity).

Gene Ontology (GO) - Molecular Function for OVOL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IEA --
GO:0000981 sequence-specific DNA binding RNA polymerase II transcription factor activity IBA --
GO:0001078 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with OVOL1: view
genes like me logo Genes that share phenotypes with OVOL1: view

Animal Models for OVOL1 Gene

MGI Knock Outs for OVOL1:

miRNA for OVOL1 Gene

miRTarBase miRNAs that target OVOL1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for OVOL1 Gene

Localization for OVOL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OVOL1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OVOL1 Gene COMPARTMENTS Subcellular localization image for OVOL1 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for OVOL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with OVOL1: view

Pathways for OVOL1 Gene

SuperPathways for OVOL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OVOL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0001822 kidney development IEA --
GO:0006366 transcription from RNA polymerase II promoter IEA --
GO:0007010 cytoskeleton organization IEA --
GO:0007283 spermatogenesis IEA --
genes like me logo Genes that share ontologies with OVOL1: view

No data available for Pathways by source for OVOL1 Gene

Transcripts for OVOL1 Gene

Unigene Clusters for OVOL1 Gene

Ovo-like 1(Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OVOL1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b
SP1: - - - - -
SP2: - - - -
SP3: -
SP4:

Relevant External Links for OVOL1 Gene

GeneLoc Exon Structure for
OVOL1
ECgene alternative splicing isoforms for
OVOL1

Expression for OVOL1 Gene

mRNA expression in normal human tissues for OVOL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for OVOL1 Gene

This gene is overexpressed in Esophagus - Mucosa (10.8), Skin - Not Sun Exposed (Suprapubic) (10.2), Skin - Sun Exposed (Lower leg) (7.7), and Testis (5.6).

SOURCE GeneReport for Unigene cluster for OVOL1 Gene Hs.134434

mRNA Expression by UniProt/SwissProt for OVOL1 Gene

O14753-OVOL1_HUMAN
Tissue specificity: Expressed in fetal kidney, and also in adult pancreas and placenta. Not expressed in intestine, peripheral blood lymphocytes and ovary
genes like me logo Genes that share expressions with OVOL1: view

Orthologs for OVOL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for OVOL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OVOL1 36
  • 99.25 (n)
  • 99.25 (a)
OVOL1 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OVOL1 36
  • 91.51 (n)
  • 94.38 (a)
OVOL1 37
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OVOL1 36
  • 89.39 (n)
  • 93.26 (a)
OVOL1 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ovol1 36
  • 90.14 (n)
  • 95.51 (a)
Ovol1 16
Ovol1 37
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OVOL1 37
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OVOL1 37
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ovol1 36
  • 89.39 (n)
  • 94.38 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia ovol1 36
  • 63.13 (n)
  • 62.04 (a)
zebrafish
(Danio rerio)
Actinopterygii ovol1 36
  • 64.46 (n)
  • 61.73 (a)
ovol1 37
  • 46 (a)
OneToMany
OVOL1 (2 of 2) 37
  • 45 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta ovo 37
  • 9 (a)
OneToMany
ovo 38
  • 72 (a)
worm
(Caenorhabditis elegans)
Secernentea lin-48 37
  • 37 (a)
OneToMany
lin-48 38
  • 67 (a)
Species with no ortholog for OVOL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for OVOL1 Gene

ENSEMBL:
Gene Tree for OVOL1 (if available)
TreeFam:
Gene Tree for OVOL1 (if available)

Paralogs for OVOL1 Gene

Paralogs for OVOL1 Gene

genes like me logo Genes that share paralogs with OVOL1: view

Variants for OVOL1 Gene

Sequence variations from dbSNP and Humsavar for OVOL1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs44205 -- 65,797,315(-) CGTAA(C/T)GAGGA downstream-variant-500B
rs491666 -- 65,796,564(-) CTCTG(G/T)AAGTT utr-variant-3-prime
rs496388 -- 65,796,032(-) AAAAA(A/T)AAAAG utr-variant-3-prime
rs499955 -- 65,785,542(-) AAGCC(A/G)GCCAG upstream-variant-2KB
rs501337 -- 65,793,897(-) AGAGC(A/C/G/T)GGGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OVOL1 Gene

Variant ID Type Subtype PubMed ID
nsv897718 CNV Loss 21882294
nsv897736 CNV Loss 21882294
nsv897758 CNV Loss 21882294
nsv897760 CNV Loss 21882294
dgv393e1 CNV Complex 17122850

Relevant External Links for OVOL1 Gene

HapMap Linkage Disequilibrium report
OVOL1

Disorders for OVOL1 Gene

Relevant External Links for OVOL1

Genetic Association Database (GAD)
OVOL1
Human Genome Epidemiology (HuGE) Navigator
OVOL1
genes like me logo Genes that share disorders with OVOL1: view

No data available for UniProtKB/Swiss-Prot for OVOL1 Gene

Publications for OVOL1 Gene

  1. Characterization of a human homolog (OVOL1) of the Drosophila ovo gene, which maps to chromosome 11q13. (PMID: 9383297) Chidambaram A. … Dean M. (Mamm. Genome 1997) 2 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis. (PMID: 22197932) Paternoster L. … Weidinger S. (Nat. Genet. 2012) 3 49
  5. Molecular phylogeny of OVOL genes illustrates a conserved C2H2 zinc finger domain coupled by hypervariable unstructured regions. (PMID: 22737237) Kumar A. … Grapputo A. (PLoS ONE 2012) 3

Products for OVOL1 Gene

Sources for OVOL1 Gene

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