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OVCA2 Gene

protein-coding   GIFtS: 39
GCID: GC17P001945

Ovarian Tumor Suppressor Candidate 2

  See OVCA2-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ovarian Tumor Suppressor Candidate 21 2
Candidate Tumor Suppressor In Ovarian Cancer 21 2
Ovarian Cancer Gene-2 Protein2
Ovarian Cancer-Associated Gene 2 Protein2

External Ids:    HGNC: 242031   Entrez Gene: 1246412   Ensembl: ENSG000002626647   OMIM: 6078965   UniProtKB: Q8WZ823   

Export aliases for OVCA2 gene to outside databases

Previous GC identifers: GC17U990304 GC17P002273 GC17P001884 GC17P002151 GC17P001892


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for OVCA2 Gene:
OVCA2 (ovarian tumor suppressor candidate 2) is a protein-coding gene. Diseases associated with OVCA2 include intrahepatic cholangiocarcinoma, and ovarian cancer. GO annotations related to this gene include hydrolase activity.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the OVCA2 gene promoter:
         c-Fos   Max1   NF-1   AP-1   GATA-2   HOXA5   Chx10   c-Jun   NF-kappaB1   c-Myc   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for OVCA2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OVCA2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.3   Ensembl cytogenetic band:  17p13.3   HGNC cytogenetic band: 17p13.3

OVCA2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OVCA2 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P001945:  view genomic region     (about GC identifiers)

Start:
1,945,277 bp from pter      End:
1,946,725 bp from pter
Size:
1,449 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: OVCA2_HUMAN, Q8WZ82 (See protein sequence)
Recommended Name: Ovarian cancer-associated gene 2 protein  
Size: 227 amino acids; 24418 Da
Caution: Encoded in an intron of the gene DPH1/OVCA1 (same strand)
Secondary accessions: Q86XN3 Q8IW87 Q9UCX9

Explore the universe of human proteins at neXtProt for OVCA2: NX_Q8WZ82

Explore proteomics data for OVCA2 at MOPED

Post-translational modifications: 

  • Proteolytically degraded in response to RA and 4HPR treatment in a time- and dose-dependent manner in the
    promyelocytic leukemia cell line HL-601
  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See OVCA2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_543012.1  
    ENSEMBL proteins: 
     ENSP00000461388  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR005645 Serine_hydrolase_FSH

    Graphical View of Domain Structure for InterPro Entry Q8WZ82

    ProtoNet protein and cluster: Q8WZ82

    1 Blocks protein domain: IPB005645 Protein of unknown function DUF341

    UniProtKB/Swiss-Prot: OVCA2_HUMAN, Q8WZ82
    Similarity: Belongs to the UPF0483 (OVCA2) family


    Find genes that share domains with OVCA2           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:
         Genatlas biochemistry entry for OVCA2:
    ovarian cancer 2 gene (see TSG17D),with homology to C elegans clone,CEC14B1,unlikely to be the same as OVCA1

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016787hydrolase activity NAS11979432
         
    Find genes that share ontologies with OVCA2           About GenesLikeMe


    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for OVCA2

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    hsa-mir-155-5p (MIRT020587)

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    hsa-miR-485-5p hsa-miR-3194-5p hsa-miR-324-3p
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    mitochondrion3
    cytoskeleton1
    cytosol1
    extracellular1
    nucleus1
    plasma membrane1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005737cytoplasm IDA16368187

    Find genes that share ontologies with OVCA2           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OVCA2
    Interactions:

        Search GeneGlobe Interaction Network for OVCA2

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008152metabolic process NAS11979432
    GO:0032526response to retinoic acid IDA11979432

    Find genes that share ontologies with OVCA2           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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      Browse compounds at ApexBio 

    Browse Tocris compounds for OVCA2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for OVCA2 gene: 
    NM_080822.2  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000572195
    miRNA
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    hsa-miR-485-5p hsa-miR-3194-5p hsa-miR-324-3p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat OVCA2
      QuantiFast Probe-based Assays in human, mouse, rat OVCA2

    Selected AceView cDNA sequences (see all 384):

    BM558769 AI193095 AF321875 CR614425 BX110749 BQ688720 NM_001383 AI753316 
    BM699273 AA632255 CA868138 CD611372 AI369646 NM_080822 BM809228 AI357934 
    AA595088 AK098268 BE349013 AL545188 AW874226 BC003099 CB132890 CR600107 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OVCA2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    OVCA2 Expression
    About this image

    OVCA2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OVCA2 Protein Expression

    UniProtKB/Swiss-Prot: OVCA2_HUMAN, Q8WZ82
    Tissue specificity: Ubiquitously expressed

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OVCA2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals and fungi.

    Orthologs for OVCA2 gene from Selected species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ovca21 , 5 candidate tumor suppressor in ovarian cancer 21, 5 84(n)1
    84(a)1
      11 (45.76 cM)5
    2462571  NM_027136.31  NP_081412.11 
     751759425 
    chicken
    (Gallus gallus)
    Aves OVCA26
    ovarian tumor suppressor candidate 2
    54(a)
    1 ↔ 1
    19(5506599-5507258)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia ovca21 similar to candidate tumor suppressor OVCA2 56.01(n)
    53.88(a)
      100124959  NM_001114239.1  NP_001107711.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003339501 ovarian cancer-associated gene 2 protein homolog 49.46(n)
    49.3(a)
      100333950  XM_002663610.3  XP_002663656.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG54121 , 3 CG54121 36(a)3
    48.93(n)1
    39.41(a)1
      92F23
    424341  NM_142638.31  NP_650895.11 
    worm
    (Caenorhabditis elegans)
    Secernentea C25G4.21 , 3 dihydrofolate reductase like3
    C25G4.21
    35(a)3
    46.09(n)1
    38.28(a)1
      IV(12443402-12444354)3
    1781941  NM_069975.41  NP_502376.11 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes FSH16
    Putative serine hydrolase that localizes to both t...
    21(a)
    1 ↔ 1
    VIII(206462-207193) YHR049W


    ENSEMBL Gene Tree for OVCA2 (if available)
    TreeFam Gene Tree for OVCA2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for OVCA2:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv33335CNV Loss17666407
    dgv3035n71CNV Loss21882294
    nsv907523CNV Loss21882294
    dgv3034n71CNV Loss21882294
    nsv907526CNV Loss21882294
    nsv827857CNV Gain20364138

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 607896    OMIM disorders: --

    2 diseases for OVCA2:    
    About MalaCards
    intrahepatic cholangiocarcinoma    ovarian cancer


    Find genes that share disorders with OVCA2           About GenesLikeMe


    Export disorders for OVCA2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OVCA2 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OVCA2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. OVCA2 is downregulated and degraded during retinoid-induced apoptosis. (PubMed id 11979432)1, 2, 3, 9 Prowse A.H.... Godwin A.K. (Int. J. Cancer 2002)
    2. Identification of two candidate tumor suppressor genes on chromosome 17p13.3. (PubMed id 8616839)1, 2, 3 Schultz D.C....Godwin A.K. (Cancer Res. 1996)
    3. Mass spectrometric identification of serine hydrolase OVCA2 in the medulloblastoma cell line DAOY. (PubMed id 16368187)1, 3 Azizi A.A....Lubec G. (Cancer Lett. 2006)
    4. A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (Cell 2012)
    5. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    6. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    7. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791)1 Wang A.G....Kim N.S. (Biochem. Biophys. Res. Commun. 2006)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    9. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 124641 HGNC: 24203 AceView: DPH2L1 Ensembl:ENSG00000262664 euGenes: HUgn124641
    ECgene: OVCA2 H-InvDB: OVCA2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OVCA2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OVCA2 gene:
    Search GeneIP for patents involving OVCA2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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