Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OVAAL Gene

Subcategory (RNA class) for OVAAL Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OVAAL Gene

  • Ovarian Adenocarcinoma Amplified Long Non-Coding RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1131 2 3
  • Ovarian Adenocarcinoma Amplified LncRNA 2 3
  • LINC01131 3
  • OVAL 3

External Ids for OVAAL Gene

Previous GeneCards Identifiers for OVAAL Gene

  • GC00U936048

Summaries for OVAAL Gene

GeneCards Summary for OVAAL Gene

OVAAL (Ovarian Adenocarcinoma Amplified Long Non-Coding RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OVAAL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OVAAL Gene

Genomics for OVAAL Gene

Regulatory Elements for OVAAL Gene

Enhancers for OVAAL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H180562 1.2 Ensembl ENCODE 0.7 +4.1 4141 1 HDGF PKNOX1 ARNT ZNF766 GATA2 ELK1 ATF7 CAVIN1 ZNF592 MEF2D XPR1 ACBD6 LHX4 OVAAL
GH01H180584 1.6 FANTOM5 Ensembl ENCODE 0.3 +27.2 27171 2 PKNOX1 FOXA2 ATF1 ARNT TCF12 FOS ATF7 SP5 GTF2B ZC3H11A ACBD6 LHX4 XPR1 CEP350 MR1 OVAAL
GH01H180570 1.1 Ensembl ENCODE 0.4 +12.8 12779 2 HDAC1 TBP BATF CHAMP1 EGR1 FOS CAVIN1 HCFC1 SMAD5 CEBPB XPR1 LHX4 OVAAL
GH01H180609 1.6 FANTOM5 Ensembl ENCODE 0.2 +52.3 52250 3 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 FOS ATF7 KIAA1614 IER5 XPR1 OVAAL
GH01H180560 0.4 ENCODE 0.7 +2.4 2365 0 JUND SCRT2 ACBD6 OVAAL XPR1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OVAAL on UCSC Golden Path with GeneCards custom track

Genomic Location for OVAAL Gene

Chromosome:
1
Start:
180,558,974 bp from pter
End:
180,566,518 bp from pter
Size:
7,545 bases
Orientation:
Plus strand

Genomic View for OVAAL Gene

Genes around OVAAL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OVAAL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OVAAL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OVAAL Gene

Proteins for OVAAL Gene

Post-translational modifications for OVAAL Gene

No Post-translational modifications

No data available for DME Specific Peptides for OVAAL Gene

Domains & Families for OVAAL Gene

Gene Families for OVAAL Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OVAAL: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OVAAL Gene

Function for OVAAL Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OVAAL Gene

Localization for OVAAL Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OVAAL Gene

Pathways & Interactions for OVAAL Gene

SuperPathways for OVAAL Gene

No Data Available

Interacting Proteins for OVAAL Gene

Gene Ontology (GO) - Biological Process for OVAAL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OVAAL Gene

Drugs & Compounds for OVAAL Gene

No Compound Related Data Available

Transcripts for OVAAL Gene

mRNA/cDNA for OVAAL Gene

(16) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OVAAL Gene

No ASD Table

Relevant External Links for OVAAL Gene

GeneLoc Exon Structure for
OVAAL
ECgene alternative splicing isoforms for
OVAAL

Expression for OVAAL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OVAAL Gene

NURSA nuclear receptor signaling pathways regulating expression of OVAAL Gene:

OVAAL
genes like me logo Genes that share expression patterns with OVAAL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OVAAL Gene

Orthologs for OVAAL Gene

Evolution for OVAAL Gene

ENSEMBL:
Gene Tree for OVAAL (if available)
TreeFam:
Gene Tree for OVAAL (if available)

No data available for Orthologs for OVAAL Gene

Paralogs for OVAAL Gene

No data available for Paralogs for OVAAL Gene

Variants for OVAAL Gene

Sequence variations from dbSNP and Humsavar for OVAAL Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000547516 -- 180,564,597(+) TGAGC(C/T)ACTAA intron-variant
rs1000642188 -- 180,564,990(+) ATTCT(C/T)CTCCT intron-variant
rs1000802880 -- 180,558,846(+) GGAGG(G/T)ACCCA upstream-variant-2KB
rs1001048778 -- 180,561,361(+) TGGGC(A/G)TTAGG intron-variant
rs1001076380 -- 180,561,658(+) CCCAA(A/C/G/T)AAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OVAAL Gene

Variant ID Type Subtype PubMed ID
nsv1003359 CNV gain 25217958

Relevant External Links for OVAAL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OVAAL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OVAAL Gene

Disorders for OVAAL Gene

Relevant External Links for OVAAL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OVAAL

No disorders were found for OVAAL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OVAAL Gene

Publications for OVAAL Gene

  1. Comprehensive analysis of long non-coding RNAs in ovarian cancer reveals global patterns and targeted DNA amplification. (PMID: 24265805) Akrami R … Larsson E (PloS one 2013) 2 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for OVAAL Gene

Sources for OVAAL Gene

Content
Loading form....