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Aliases for OTX2-AS1 Gene

Subcategory (RNA class) for OTX2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for OTX2-AS1 Gene

  • OTX2 Antisense RNA 1 (Head To Head) 2 3 5
  • OTX2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Otx2 Opposite Strand Transcript 1 3
  • OTX2 Antisense RNA 1 2
  • OTX2OS1 3

External Ids for OTX2-AS1 Gene

Previous GeneCards Identifiers for OTX2-AS1 Gene

  • GC14P057280

Summaries for OTX2-AS1 Gene

GeneCards Summary for OTX2-AS1 Gene

OTX2-AS1 (OTX2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OTX2-AS1 Gene

Genomics for OTX2-AS1 Gene

Regulatory Elements for OTX2-AS1 Gene

Enhancers for OTX2-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around OTX2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OTX2-AS1 Gene

56,813,183 bp from pter
57,152,177 bp from pter
338,995 bases
Plus strand

Genomic View for OTX2-AS1 Gene

Genes around OTX2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OTX2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OTX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OTX2-AS1 Gene

Proteins for OTX2-AS1 Gene

Post-translational modifications for OTX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OTX2-AS1 Gene

Domains & Families for OTX2-AS1 Gene

Gene Families for OTX2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OTX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OTX2-AS1 Gene

Function for OTX2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OTX2-AS1 Gene

Localization for OTX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OTX2-AS1 Gene

Pathways & Interactions for OTX2-AS1 Gene

SuperPathways for OTX2-AS1 Gene

No Data Available

Interacting Proteins for OTX2-AS1 Gene

Gene Ontology (GO) - Biological Process for OTX2-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for OTX2-AS1 Gene

Drugs & Compounds for OTX2-AS1 Gene

No Compound Related Data Available

Transcripts for OTX2-AS1 Gene

mRNA/cDNA for OTX2-AS1 Gene

(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OTX2-AS1 Gene

OTX2 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OTX2-AS1 Gene

No ASD Table

Relevant External Links for OTX2-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for OTX2-AS1 Gene

mRNA expression in normal human tissues for OTX2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OTX2-AS1 Gene

This gene is overexpressed in Brain - Substantia nigra (x19.2), Brain - Hypothalamus (x8.1), Brain - Hippocampus (x6.4), and Brain - Caudate (basal ganglia) (x4.6).

SOURCE GeneReport for Unigene cluster for OTX2-AS1 Gene Hs.637962

genes like me logo Genes that share expression patterns with OTX2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for OTX2-AS1 Gene

Orthologs for OTX2-AS1 Gene

Evolution for OTX2-AS1 Gene

Gene Tree for OTX2-AS1 (if available)
Gene Tree for OTX2-AS1 (if available)

No data available for Orthologs for OTX2-AS1 Gene

Paralogs for OTX2-AS1 Gene

No data available for Paralogs for OTX2-AS1 Gene

Variants for OTX2-AS1 Gene

Sequence variations from dbSNP and Humsavar for OTX2-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs198242 -- 56,834,323(-) tgaaa(A/C)cccat intron-variant
rs198251 -- 56,842,876(-) gaaat(A/G)tgaac intron-variant
rs198252 -- 56,842,760(-) ggtgc(C/T)ggagc intron-variant
rs198253 -- 56,840,192(+) TGTTA(A/G)GGGCC intron-variant
rs198254 -- 56,839,683(-) CGTGA(A/G)CCACC intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for OTX2-AS1 Gene

Disorders for OTX2-AS1 Gene

Relevant External Links for OTX2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for OTX2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OTX2-AS1 Gene

Publications for OTX2-AS1 Gene

  1. Natural antisense transcripts associated with genes involved in eye development. (PMID: 15703187) Alfano G. … Banfi S. (Hum. Mol. Genet. 2005) 2 3 67
  2. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OTX2-AS1 Gene

Sources for OTX2-AS1 Gene