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Aliases for OTX2-AS1 Gene

Subcategory (RNA class) for OTX2-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for OTX2-AS1 Gene

  • OTX2 Antisense RNA 1 (Head To Head) 2 3
  • OTX2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Otx2 Opposite Strand Transcript 1 3
  • OTX2 Antisense RNA 1 2
  • OTX2OS1 3

External Ids for OTX2-AS1 Gene

Previous GeneCards Identifiers for OTX2-AS1 Gene

  • GC14P057280

Summaries for OTX2-AS1 Gene

GeneCards Summary for OTX2-AS1 Gene

OTX2-AS1 (OTX2 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OTX2-AS1 Gene

Genomics for OTX2-AS1 Gene

Genomic Location for OTX2-AS1 Gene

Start:
56,813,183 bp from pter
End:
57,152,177 bp from pter
Size:
338,995 bases
Orientation:
Plus strand

Genomic View for OTX2-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OTX2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OTX2-AS1 Gene

No data available for Regulatory Elements for OTX2-AS1 Gene

Proteins for OTX2-AS1 Gene

Post-translational modifications for OTX2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OTX2-AS1 Gene

Domains for OTX2-AS1 Gene

Gene Families for OTX2-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OTX2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OTX2-AS1 Gene

Function for OTX2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OTX2-AS1 Gene

Localization for OTX2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OTX2-AS1 Gene

Pathways for OTX2-AS1 Gene

SuperPathways for OTX2-AS1 Gene

No Data Available

Interacting Proteins for OTX2-AS1 Gene

Gene Ontology (GO) - Biological Process for OTX2-AS1 Gene

None

No data available for Pathways by source for OTX2-AS1 Gene

Transcripts for OTX2-AS1 Gene

mRNA/cDNA for OTX2-AS1 Gene

(6) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OTX2-AS1 Gene

OTX2 antisense RNA 1 (head to head):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OTX2-AS1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OTX2-AS1 Gene

No ASD Table

Relevant External Links for OTX2-AS1 Gene

GeneLoc Exon Structure for
OTX2-AS1
ECgene alternative splicing isoforms for
OTX2-AS1

Expression for OTX2-AS1 Gene

mRNA expression in normal human tissues for OTX2-AS1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for OTX2-AS1 Gene

This gene is overexpressed in Brain - Substantia nigra (19.2), Brain - Hypothalamus (8.1), Brain - Hippocampus (6.4), and Brain - Caudate (basal ganglia) (4.6).

SOURCE GeneReport for Unigene cluster for OTX2-AS1 Gene Hs.637962

genes like me logo Genes that share expressions with OTX2-AS1: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for OTX2-AS1 Gene

Orthologs for OTX2-AS1 Gene

Evolution for OTX2-AS1 Gene

ENSEMBL:
Gene Tree for OTX2-AS1 (if available)
TreeFam:
Gene Tree for OTX2-AS1 (if available)

No data available for Orthologs for OTX2-AS1 Gene

Paralogs for OTX2-AS1 Gene

No data available for Paralogs for OTX2-AS1 Gene

Variants for OTX2-AS1 Gene

Sequence variations from dbSNP and Humsavar for OTX2-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1809 -- 56,890,734(+) GCTTT(A/T)TCTTT intron-variant
rs198242 -- 56,834,323(-) tgaaa(A/C)cccat intron-variant
rs198251 -- 56,842,876(-) gaaat(A/G)tgaac intron-variant
rs198252 -- 56,842,760(-) ggtgc(C/T)ggagc intron-variant
rs198253 -- 56,840,192(+) TGTTA(A/G)GGGCC intron-variant

Relevant External Links for OTX2-AS1 Gene

HapMap Linkage Disequilibrium report
OTX2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OTX2-AS1 Gene

Disorders for OTX2-AS1 Gene

No disorders were found for OTX2-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for OTX2-AS1 Gene

Publications for OTX2-AS1 Gene

  1. Natural antisense transcripts associated with genes involved in eye development. (PMID: 15703187) Alfano G. … Banfi S. (Hum. Mol. Genet. 2005) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OTX2-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate OTX2-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for OTX2-AS1
    • Block miRNA regulation of OTX2-AS1 using miScript Target Protectors

    Sources for OTX2-AS1 Gene

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