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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

OTUD3 Gene

protein-coding GIFtS: 44
GCID: GC01P020208

OTU domain containing 3

Explore 2 diseases affiliated with
OTUD3 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
OTU Domain Containing 3¹ ²
KIAA0459¹ ³ ⁵
DUBA4¹ ²
RP11-460G22.1²
OTU Domain-Containing Protein 3²

External Ids:	HGNC: 29038¹	Entrez Gene: 23252²	Ensembl: ENSG00000169914⁷	OMIM: 611758⁵	UniProtKB: Q5T2D3³

Export aliases for OTUD3 gene to outside databases

Previous GC identifers: GC01P019977 GC01P020081 GC01P018454

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000001.10 NC_018912.1 NT_004610.19

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the OTUD3 gene promoter:
AP-2rep STAT1 Elk-1 Pax-5 GATA-3 CUTL1 GATA-1 GATA-2 Evi-1 S8
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

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Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OTUD3

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.13 Ensembl cytogenetic band: 1p36.13 HGNC cytogenetic band: 1p36.13

OTUD3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OTUD3 gene location

GeneLoc information about chromosome 1 GeneLoc Exon Structure

GeneLoc location for GC01P020208: view genomic region (about GC identifiers)

Start:	20,208,888 bp from pter	End:	20,239,438 bp from pter
Size:	30,551 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: OTUD3_HUMAN, Q5T2D3 (See protein sequence)

Recommended Name: OTU domain-containing protein 3

Size: 398 amino acids; 45124 Da

Sequence caution: Sequence=BAA32304.2; Type=Erroneous initiation;

Secondary accessions: O75047

Explore the universe of human proteins at neXtProt for OTUD3: NX_Q5T2D3

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q5T2D3

OTUD3 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_056022.1

ENSEMBL proteins:

ENSP00000364261

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

OTUD3 for domains About GeneDecksing

1 InterPro domain/family:

IPR003323 OTU

Graphical View of Domain Structure for InterPro Entry Q5T2D3

ProtoNet protein and cluster: Q5T2D3

UniProtKB/Swiss-Prot: OTUD3_HUMAN, Q5T2D3

Similarity: Contains 1 OTU domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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1 GenomeRNAi human phenotype for OTUD3:

Decreased p24 protein expressi

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for OTUD3

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for OTUD3 gene:

NM_015207.1

Unigene Cluster for OTUD3:

OTU domain containing 3

Hs.374987 [show with all ESTs]

Unigene Representative Sequence: NM_015207

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000375120(uc001bcs.4) ENST00000466697 ENST00000481686

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Additional cDNA sequence:

AB007928.3 BC119636.2 BC134416.1

3 DOTS entries:

DT.95256116 DT.95150968 DT.100718781

24/56 AceView cDNA sequences (see all 56):

AL537464 AI142801 CD674028 AB007928 F12671 BU608539 CR613908 AI659298

BX484822 BU187452 BM969728 AI191035 F10283 AI560700 AA515223 AI859905

AW628652 CR609865 AI582693 BQ930494 AI278624 BU733873 BQ638227 AL564535

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

OTUD3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGGTCGTGAT

About this image

OTUD3 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Limb

Limb Bud

Limb

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See OTUD3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for OTUD3

SOURCE GeneReport for Unigene cluster: Hs.374987

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for OTUD3 gene from 5/21 species (see all 21) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Otud3^{1 , 5}	OTU domain containing 3^{1, 5}	84.68(n)¹ 83.84(a)¹		4 (70.57 cM)⁵ 73162¹ NM_028453.1¹ NP_082729.1¹ 138895379⁵
chicken (Gallus gallus)	Aves	OTUD3¹	OTU domain containing 3	69.68(n) 65.16(a)		426746 XM_424363.3 XP_424363.3
zebrafish (Danio rerio)	Actinopterygii	otud3¹	OTU domain containing 3	59.2(n) 56.86(a)		405858 NM_212922.1 NP_998087.1
thale cress (Arabidopsis thaliana)	eudicotyledons	AT5G67170⁶	SEC-C motif-containing protein / OTU-like cysteine...	25(a)	1 ↔ 1	5(26799766-26802067)
rice (Oryza sativa)	Liliopsida	--	OTU-like cysteine protease family protein, putativ...	23(a)	1 ↔ 1	4(34015915-34020578)

ENSEMBL Gene Tree for OTUD3 (if available)
TreeFam Gene Tree for OTUD3 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 1 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs190113538^1,2		--	20206891(+)	`CAAGTA/GTTCGC`	1	--	us2k¹		0	--	--	--	--
rs144030843^1,2		--	20206919(+)	`AGCAGA/TCTGTA`	1	--	us2k¹		0	--	--	--	--
rs75408739^1,2	C,F,	--	20207074(+)	`TTTATT/GTAATC`	1	--	us2k¹		1		WA	118
rs78887680^1,2	F,	--	20207080(+)	`TAATCT/GTTACA`	1	--	us2k¹		1		WA	118
rs11579625^1,2	C,F,H,	--	20207105(+)	`TCTTAT/CTGTCA`	1	--	us2k¹		11		NS EA NA WA	682
rs116951644^1,2	F,	--	20207188(+)	`AAAAAT/CAGCAG`	1	--	us2k¹		1		EA	120
rs182109748^1,2		--	20207364(+)	`ATATAG/TCGTTC`	1	--	us2k¹		0	--	--	--	--
rs10916663^1,2	C,F,A,H,	--	20207622(+)	`CTGCAC/TGTTCT`	1	--	us2k¹		9		NA WA CSA EA	370
rs114234592^1,2	C,	--	20207807(+)	`CCTCAC/TGCAAT`	1	--	us2k¹		0	--	--	--	--
rs187919034^1,2		--	20208027(+)	`ATCTCC/GGCTCA`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for OTUD3 (20208888 - 20239438 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for OTUD3: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

OTUD3 for disorders           About GeneDecksing

OMIM gene information: 611758    OMIM disorders: --

2 diseases for OTUD3:    About MalaCards

ulcerative colitis malaria

Human Genome Epidemiology (HuGE) Navigator: OTUD3 (2 documents)

Export disorders for OTUD3 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for OTUD3 gene integrated from 9 sources:
(articles sorted by number of sources associating them with OTUD3)

Utopia: connect your pdf to the dynamic
world of online information

Characterization of cDNA clones in size-fractionated cDNA libraries from human brain. (PubMed id 9455484)^{1, 2, 3} Seki N.... Ohara O. (1997)
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)^{1, 2} Gregory S.G.... Bentley D.R. (2006)
Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)¹ Danielsen J.M....Nielsen M.L. (2011)
Genome-wide association identifies multiple ulcerativ e colitis susceptibility loci. (PubMed id 20228799)¹ McGovern D.P....Weersma R.K. (2010)
Genome-wide association study for ulcerative colitis identifies risk loci at 7q22 and 22q13 (IL17REL). (PubMed id 20228798)¹ Franke A....Vatn M.H. (2010)
Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study. (PubMed id 19122664)¹ Silverberg M.S....Duerr R.H. (2009)
Genome-wide association study of ulcerative colitis i dentifies three new susceptibility loci, including the HNF4A region. (PubMed id 19915572)¹ .... D.P. (2009)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)² Dephoure N.... Gygi S.P. (2008)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
The sequence of the human genome. (PubMed id 11181995)¹ Venter J.C.... Zhu X. (2001)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 23252	HGNC: 29038	AceView: KIAA0459	Ensembl:ENSG00000169914	euGenes: HUgn23252
ECgene: OTUD3	H-InvDB: OTUD3

(According to HUGE)
About This Section

HUGE: KIAA0459

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for OTUD3	Pharmacogenomics, SNPs, Pathways

Intellectual Property for OTUD3 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for OTUD3 gene:
Search GeneIP for patents involving OTUD3

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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	OTUD3 lysates

	Search for Antibodies for OTUD3 at Abcam
	See all of Abcam's Antibodies, Kits and Proteins for OTUD3
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Browse ProSpec Recombinant Proteins

OTUD3 Proteins, Antibodies, CLIAs, and ELISAs

Search LifeMap BioReagents cell lines for OTUD3

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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OTUD3

	Browse SwitchGear 3'UTR luciferase reporter plasmids for OTUD3
	Browse SwitchGear Promoter luciferase reporter plasmids for OTUD3

ThermoFisher Antibodies for OTUD3

Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OTUD3

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes OTUD3 gene at Home site.

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OTUD3 Gene

OTU domain containing 3

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OTUD3 Gene

OTU domain containing 3

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Genomic Viewsfor OTUD3 gene

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Protein Domains /Familiesfor OTUD3 gene

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Specialized Databases showing OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

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for OTUD3 gene

Intellectual Property
for OTUD3 gene

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for OTUD3 gene