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Aliases for OTUD1 Gene

Aliases for OTUD1 Gene

  • OTU Deubiquitinase 1 2 3
  • DUBA7 3 4 6
  • OTU Domain Containing 1 2 3
  • DUBA-7 3 4
  • OTDC1 3 4
  • OTU Domain-Containing Protein 1 3
  • EC 3.4.19.12 4

External Ids for OTUD1 Gene

Previous HGNC Symbols for OTUD1 Gene

  • OTDC1

Previous GeneCards Identifiers for OTUD1 Gene

  • GC10P023693
  • GC10P023768
  • GC10P023389
  • GC10P023728

Summaries for OTUD1 Gene

Entrez Gene Summary for OTUD1 Gene

  • Deubiquitinating enzymes (DUBs; see MIM 603478) are proteases that specifically cleave ubiquitin (MIM 191339) linkages, negating the action of ubiquitin ligases. DUBA7 belongs to a DUB subfamily characterized by an ovarian tumor (OTU) domain.[supplied by OMIM, May 2008]

GeneCards Summary for OTUD1 Gene

OTUD1 (OTU Deubiquitinase 1) is a Protein Coding gene. GO annotations related to this gene include ubiquitin-specific protease activity.

UniProtKB/Swiss-Prot for OTUD1 Gene

  • Deubiquitinating enzyme that specifically hydrolyzes Lys-63-linked polyubiquitin to monoubiquitin.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OTUD1 Gene

Genomics for OTUD1 Gene

Regulatory Elements for OTUD1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for OTUD1 Gene

Start:
23,439,269 bp from pter
End:
23,442,390 bp from pter
Size:
3,122 bases
Orientation:
Plus strand

Genomic View for OTUD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OTUD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OTUD1 Gene

Proteins for OTUD1 Gene

  • Protein details for OTUD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VV17-OTUD1_HUMAN
    Recommended name:
    OTU domain-containing protein 1
    Protein Accession:
    Q5VV17
    Secondary Accessions:

    Protein attributes for OTUD1 Gene

    Size:
    481 amino acids
    Molecular mass:
    51063 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for OTUD1 Gene

neXtProt entry for OTUD1 Gene

Proteomics data for OTUD1 Gene at MOPED

Post-translational modifications for OTUD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for OTUD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for OTUD1 Gene

Domains for OTUD1 Gene

Gene Families for OTUD1 Gene

HGNC:
  • OTUD :OTU domain containing

Protein Domains for OTUD1 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for OTUD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VV17

UniProtKB/Swiss-Prot:

OTUD1_HUMAN :
  • Q5VV17
Domain:
  • The UIM repeat increases the specificity and efficiency of the enzyme toward Lys-63-linked polyubiquitin.
  • Specificity is not given by the S1 ubiquitin-binding site within the OTU domain (composed of the Cys-, His- and Variable-loops).
  • Contains 1 OTU domain.
  • Contains 1 UIM (ubiquitin-interacting motif) domain.
genes like me logo Genes that share domains with OTUD1: view

Function for OTUD1 Gene

Molecular function for OTUD1 Gene

UniProtKB/Swiss-Prot CatalyticActivity: Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
UniProtKB/Swiss-Prot Function: Deubiquitinating enzyme that specifically hydrolyzes Lys-63-linked polyubiquitin to monoubiquitin.

Enzyme Numbers (IUBMB) for OTUD1 Gene

Gene Ontology (GO) - Molecular Function for OTUD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004843 ubiquitin-specific protease activity IDA 23827681
genes like me logo Genes that share ontologies with OTUD1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OTUD1

In Situ Assay Products

Flow Cytometry Products

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for OTUD1 Gene

Localization for OTUD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OTUD1 Gene COMPARTMENTS Subcellular localization image for OTUD1 gene
Compartment Confidence
cytosol 2
nucleus 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for OTUD1 Gene

Pathways for OTUD1 Gene

SuperPathways for OTUD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OTUD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis --
GO:0070536 protein K63-linked deubiquitination IDA 23827681
genes like me logo Genes that share ontologies with OTUD1: view

No data available for Pathways by source for OTUD1 Gene

Transcripts for OTUD1 Gene

mRNA/cDNA for OTUD1 Gene

(89) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OTUD1 Gene

OTU domain containing 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OTUD1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for OTUD1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OTUD1 Gene

No ASD Table

Relevant External Links for OTUD1 Gene

GeneLoc Exon Structure for
OTUD1
ECgene alternative splicing isoforms for
OTUD1

Expression for OTUD1 Gene

mRNA expression in normal human tissues for OTUD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for OTUD1 Gene

SOURCE GeneReport for Unigene cluster for OTUD1 Gene Hs.499042

genes like me logo Genes that share expressions with OTUD1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OTUD1 Gene

Orthologs for OTUD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OTUD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OTUD1 35
  • 99.37 (n)
  • 99.58 (a)
OTUD1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OTUD1 35
  • 86.47 (n)
  • 87.87 (a)
OTUD1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OTUD1 36
  • 90 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Otud1 35
  • 81.95 (n)
  • 82.25 (a)
Otud1 16
Otud1 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OTUD1 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OTUD1 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Otud1 35
  • 81.17 (n)
  • 82.06 (a)
chicken
(Gallus gallus)
Aves OTUD1 35
  • 73.33 (n)
  • 77.65 (a)
OTUD1 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia OTUD1 36
  • 51 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.4971 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.10971 35
zebrafish
(Danio rerio)
Actinopterygii Dr.17111 35
Species with no ortholog for OTUD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for OTUD1 Gene

ENSEMBL:
Gene Tree for OTUD1 (if available)
TreeFam:
Gene Tree for OTUD1 (if available)

Paralogs for OTUD1 Gene

Pseudogenes.org Pseudogenes for OTUD1 Gene

genes like me logo Genes that share paralogs with OTUD1: view

No data available for Paralogs for OTUD1 Gene

Variants for OTUD1 Gene

Sequence variations from dbSNP and Humsavar for OTUD1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1511822 -- 23,440,594(+) TACCC(A/G)GAGTT synonymous-codon, reference
rs1995981 -- 23,437,847(-) AGGTG(C/T)GAATG upstream-variant-2KB
rs4586049 -- 23,441,262(+) TTCAT(C/G/T)TATGA utr-variant-3-prime
rs4748890 -- 23,441,313(+) GAGAA(G/T)TGCTT utr-variant-3-prime
rs7071200 -- 23,439,130(+) CGGGC(A/G)GCTTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OTUD1 Gene

Variant ID Type Subtype PubMed ID
nsv825305 CNV Gain 20364138

Relevant External Links for OTUD1 Gene

HapMap Linkage Disequilibrium report
OTUD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OTUD1 Gene

Disorders for OTUD1 Gene

No disorders were found for OTUD1 Gene.

No data available for UniProtKB/Swiss-Prot for OTUD1 Gene

Publications for OTUD1 Gene

  1. OTU deubiquitinases reveal mechanisms of linkage specificity and enable ubiquitin chain restriction analysis. (PMID: 23827681) Mevissen T.E. … Komander D. (Cell 2013) 2 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. DUBA: a deubiquitinase that regulates type I interferon production. (PMID: 17991829) Kayagaki N. … Dixit V.M. (Science 2007) 3
  4. Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication. (PMID: 18854154) KAPnig R. … Chanda S.K. (Cell 2008) 3
  5. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3

Products for OTUD1 Gene

Sources for OTUD1 Gene

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