OTOR Gene
protein-coding GIFtS : 53
GCID: GC20 P016729
otoraplin
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Aliasesfor OTOR gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Otoraplin 1 FDP1 2 3 MIAL1 2 3 MIAL11 2 Fibrocyte-Derived Protein2 3 Melanoma Inhibitory Activity-Like Protein2 3
Export aliases for OTOR gene to outside databases Previous GC identifers: GC20P016717 GC20P016724 GC20P016677
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Summariesfor OTOR gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for OTOR : The protein encoded by this gene is secreted via the Golgi apparatus and may function in cartilage development and maintenance. A frequent polymorphism in the translation start codon of this gene can abolish translation and may be associated with forms of deafness. This gene is a member of the melanoma-inhibiting activity gene family. In addition, alternate polyA sites exist for this gene. (provided by RefSeq, Jul 2008) Gene Wiki entry for OTOR
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Genomic Viewsfor OTOR gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000020.10 NC_018931.1 NT_011387.8 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the OTOR gene promoter: MEF-2A PPAR-gamma1 FOXF2 AP-1 FOXJ2 (long isoform) FOXJ2 aMEF-2 FOXL1 Other transcription factors Search SABiosciences Chromatin IP Primers for OTOR Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OTOR
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 20p12.1-p11.23 Ensembl cytogenetic band: 20p12.1 HGNC cytogenetic band: 20p12.1-p11.23 OTOR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 20 GeneLoc Exon Structure
GeneLoc location for GC20P016729: view genomic region
(about GC identifiers )
Start:
16,729,003 bp from pter
End:
16,750,707 bp from pter
Size:
21,705 bases
Orientation:
plus strand
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Proteinsfor OTOR gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: OTOR_HUMAN, Q9NRC9 (See
protein sequence )Recommended Name: Otoraplin precursor Size : 128 amino acids; 14332 Da
Subcellular location : Secreted (Potential)
Secondary accessions : D3DW22 Q3MIU6Explore the universe of human proteins at neXtProt for OTOR: NX_Q9NRC9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NRC9 OTOR Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_064542.1 ENSEMBL proteins: ENSP00000246081 Human Recombinant Protein Products for OTOR: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA --
OTOR for ontologies About GeneDecksing OTOR Antibody Products: Assay Products for OTOR:
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Protein
Domains / Familiesfor OTOR gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
OTOR for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NRC9 ProtoNet protein and cluster: Q9NRC9
1 Blocks protein family : IPB001452 SH3 domain signature UniProtKB/Swiss-Prot: OTOR_HUMAN, Q9NRC9 Similarity : Belongs to the MIA/OTOR familySimilarity : Contains 1 SH3 domain
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Functionfor OTOR gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Phenotypes: 1 MGI phenotypic allele for Otor (no phenotypes)
OTOR for phenotypes About GeneDecksing Animal Models: Mouse knock-out Otor tm1Lex for OTORClone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OTOR (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OTOROriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: OTOR (NM_020157 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OTOR Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OTOR
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OTOR
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Pathways & Interactionsfor OTOR gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OTOR Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
OTOR for ontologies About GeneDecksing
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Drugs & Compoundsfor OTOR gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for OTOR Search CenterWatch for drugs/clinical trials and news about OTOR
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Transcriptsfor OTOR gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
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siRNAs from
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QIAGEN ,
shRNA from
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microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
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Primers from
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QIAGEN
)About This Section REFSEQ mRNAs for OTOR gene: NM_020157.2 Unigene Cluster for OTOR:
Otoraplin Hs.41119 [show with all ESTs ] Unigene Representative Sequence: NM_020157 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000246081 (uc002wpj.3 ) ENST00000486129 ENST00000490148 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OTOR (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OTOROriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: OTOR (NM_020157 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OTOR Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OTOR
Additional cDNA sequence: AF233261.1 AF243505.1 AJ242552.1 AY359082.1 BC101688.1 BC101690.1
4 DOTS entries : DT.307722 DT.100844264
DT.92070627 DT.40239237 24/33 AceView cDNA sequences (see all 33 ):
CR624240 NM_020157 AJ242552 N68117 AF233261 N63222 N69775 BX418941 AY359082 AF243505 BE858557 BX444840 BI492218 BI495574 BI496734 AW022083 BX444839 BI495576 BI493008 N67179 H88081 BI493047 BI495573 AW022047 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for OTOR About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b SP1 :     -   -         SP2 :              
ECgene alternative splicing isoforms for OTOR
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Expression for OTOR gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section OTOR expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATGTTTTCTAAbout this image OTOR expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See OTOR Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for OTOR SOURCE GeneReport for Unigene cluster: Hs.41119 UniProtKB/Swiss-Prot: OTOR_HUMAN, Q9NRC9 Tissue specificity : Highly expressed in cochlea SABiosciences Custom PCR Arrays for OTOR Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for OTORBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat OTOR QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat OTOR QIAGEN QuantiFast Probe-based Assays in human , mouse , rat OTOR In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OTOR
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Orthologsfor OTOR gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for OTOR gene from 3/12 species (see all 12 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
OTOR1
otoraplin
72.58(n) 75(a)
 
395484 NM_204732.1 NP_990063.1
lizard (Anolis carolinensis)
Reptilia
OTOR6
--
76(a)
1 ↔ 1
1(127296921-127299327)
fruit fly (Drosophila melanogaster)
Insecta
Tango16
Transport and Golgi organization 1
2(a)
1 → many
2L(6649388-6654574)
ENSEMBL Gene Tree for OTOR (if available)TreeFam Gene Tree for OTOR (if available)
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Paralogsfor OTOR gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for OTOR gene MIA2 2 MIA 2 4 SIMAP similar genes for OTOR using alignment to 1 protein entry: OTOR_HUMAN :MIA MIA3 MIA2 CTAGE5
OTOR for paralogs About GeneDecksing
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Genomic Variantsfor OTOR gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 20 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for OTOR (16729003 - 16750707 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for OTOR 2 CNVs : 6069 6070 Human Gene Mutation Database (HGMD) : OTOR SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing OTOR
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Disorders
/ Diseasesfor OTOR gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
OTOR for disorders About GeneDecksing
OMIM gene information: 606067
OMIM disorders : --3 diseases for OTOR : About MalaCards melanoma disseminated intravascular coagulation pulmonary embolism 1 Novoseek disease relationship for OTOR gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
melanoma
43
6
11161796 (2), 10873378 (1)
Human Genome Epidemiology (HuGE) Navigator: OTOR (2 documents) Export disorders for OTOR gene to outside databases
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Publicationsfor OTOR gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for OTOR gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with OTOR) Utopia : connect your pdf to the dynamic world of online information
A novel conserved cochlear gene, OTOR: identification, expression analysis, and chromosomal mapping. (PubMed id 10873378) 1 , 2 , 3, 9 Robertson N.G.... Morton C.C. (2000) Identification and characterization of an inner ear-expressed human melanoma inhibitory activity (MIA)-like gene (MIAL) with a frequent polymorphism that abolishes translation. (PubMed id 11161796) 1 , 2 , 9 Rendtorff N.D.... Tommerup N. (2001) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 1 , 2 Zhang Z. and Henzel W.J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052) 1 , 2 Deloukas P....Rogers J. (2001) Fdp, a new fibrocyte-derived protein related to MIA/CD-RAP, has an in vitro effect on the early differentiation of the inner ear mesenchyme. (PubMed id 10998416) 1 , 2 Cohen-Salmon M.... Petit C. (2000) Investigation of genetic susceptibility factors for h uman longevity - A targeted nonsynonymous SNP study. (PubMed id 20800603) 1 Flachsbart F....Nebel A. (2010) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening. (PubMed id 7829101) 1 Robertson N.G....Morton C.C. (1994)
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External Searches for OTOR gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing OTOR gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing OTOR gene
(According to HUGE )
About This Section --
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Specialized Databases showing OTOR gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for OTOR gene: Search GeneIP for patents involving OTOR GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor OTOR gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for OTOR OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for OTOR OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for OTOR OriGene Protein Over-expression Lysate for OTOR Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for OTOR Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OTOR OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OTOR Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for OTOR OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for OTOR OriGene Custom Protein Services for OTOR OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OTOR QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing OTOR QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OTOR QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat OTOR QIAGEN QuantiFast Probe-based Assays in human , mouse , rat OTOR QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat OTOR
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Recombinant Protein for OTOR
OTOR Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OTOR
ThermoFisher Antibodies for OTOR
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OTOR
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Aliases for OTOR
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