Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OSTM1-AS1 Gene

Subcategory (RNA class) for OSTM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OSTM1-AS1 Gene

  • OSTM1 Antisense RNA 1 2 3 5
  • OSTM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OSTM1-AS1 Gene

Previous GeneCards Identifiers for OSTM1-AS1 Gene

  • GC06P108446

Summaries for OSTM1-AS1 Gene

GeneCards Summary for OSTM1-AS1 Gene

OSTM1-AS1 (OSTM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTM1-AS1 Gene

Genomics for OSTM1-AS1 Gene

Regulatory Elements for OSTM1-AS1 Gene

Enhancers for OSTM1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G108895 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.6 +773.0 772956 2.7 ZNF76 KLF17 RAD21 ZEB1 YY1 KLF7 FOS SP3 ZNF280D YY2 ARMC2 RNU6-653P ARMC2-AS1 OSTM1-AS1 FOXO3 CD164 ATP5J2P2 RPS12P13
GH06G108113 2.1 VISTA Ensembl 0.4 -8.1 -8141 3.7 CREB3L1 ZSCAN4 YBX1 ZNF2 ZNF48 RAD21 ZNF366 ZNF143 ZNF263 ZNF654 NR2E1 OSTM1 OSTM1-AS1 ENSG00000238490
GH06G108127 1 ENCODE 0.7 +4.5 4507 0.2 PKNOX1 FOXA2 MLX FEZF1 ZNF2 YY1 FOS ZHX2 ZNF518A SREBF1 NR2E1 OSTM1 OSTM1-AS1 GC06M108139
GH06G108117 1.7 Ensembl 0.4 -5.3 -5349 1.4 SUZ12 CEBPG RBBP5 ZBTB48 EZH2 RNF2 L3MBTL2 HLF CBX2 CHD1 NR2E1 OSTM1 SEC63 OSTM1-AS1 ENSG00000238490
GH06G108133 1.2 Ensembl ENCODE 0.4 +10.6 10620 1.5 PKNOX1 SIN3A ZNF2 ZNF48 GLIS2 KLF7 ZNF263 TSHZ1 KAT8 CBX8 NR2E1 OSTM1 SEC63 GC06M108139 OSTM1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSTM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OSTM1-AS1 Gene

Chromosome:
6
Start:
108,123,515 bp from pter
End:
108,159,392 bp from pter
Size:
35,878 bases
Orientation:
Plus strand

Genomic View for OSTM1-AS1 Gene

Genes around OSTM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSTM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSTM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTM1-AS1 Gene

Proteins for OSTM1-AS1 Gene

Post-translational modifications for OSTM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTM1-AS1 Gene

Domains & Families for OSTM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

Function for OSTM1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSTM1-AS1 Gene

Localization for OSTM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSTM1-AS1 Gene

Pathways & Interactions for OSTM1-AS1 Gene

SuperPathways for OSTM1-AS1 Gene

No Data Available

Interacting Proteins for OSTM1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSTM1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSTM1-AS1 Gene

Drugs & Compounds for OSTM1-AS1 Gene

No Compound Related Data Available

Transcripts for OSTM1-AS1 Gene

mRNA/cDNA for OSTM1-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTM1-AS1 Gene

OSTM1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OSTM1-AS1 Gene

No ASD Table

Relevant External Links for OSTM1-AS1 Gene

GeneLoc Exon Structure for
OSTM1-AS1
ECgene alternative splicing isoforms for
OSTM1-AS1

Expression for OSTM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OSTM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OSTM1-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x9.8), Brain - Caudate (basal ganglia) (x9.3), Brain - Amygdala (x6.7), Brain - Putamen (basal ganglia) (x5.8), Brain - Frontal Cortex (BA9) (x5.0), Brain - Cortex (x5.0), Brain - Anterior cingulate cortex (BA24) (x4.1), and Brain - Hippocampus (x4.0).

SOURCE GeneReport for Unigene cluster for OSTM1-AS1 Gene:

Hs.221513
genes like me logo Genes that share expression patterns with OSTM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSTM1-AS1 Gene

Orthologs for OSTM1-AS1 Gene

Evolution for OSTM1-AS1 Gene

ENSEMBL:
Gene Tree for OSTM1-AS1 (if available)
TreeFam:
Gene Tree for OSTM1-AS1 (if available)

No data available for Orthologs for OSTM1-AS1 Gene

Paralogs for OSTM1-AS1 Gene

No data available for Paralogs for OSTM1-AS1 Gene

Variants for OSTM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OSTM1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000112304 -- 108,157,130(+) CCATA(C/G)TGACC nc-transcript-variant
rs1000127976 -- 108,137,359(+) AGCAC(A/G)TGCAT intron-variant
rs1000139098 -- 108,148,819(+) TATGA(C/T)TGTAA intron-variant
rs1000183513 -- 108,126,198(+) ACTGC(C/G)TCTGC intron-variant
rs1000184515 -- 108,158,240(+) AAAAC(C/T)GTAAG nc-transcript-variant

Relevant External Links for OSTM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSTM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OSTM1-AS1 Gene

Disorders for OSTM1-AS1 Gene

Relevant External Links for OSTM1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSTM1-AS1

No disorders were found for OSTM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSTM1-AS1 Gene

Publications for OSTM1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. (PMID: 12079282) Abrahams B.S. … Venkatesh B. (Genomics 2002) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64
  4. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3 64

Products for OSTM1-AS1 Gene

Sources for OSTM1-AS1 Gene

Content
Loading form....