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Aliases for OSTM1-AS1 Gene

Subcategory (RNA class) for OSTM1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for OSTM1-AS1 Gene

  • OSTM1 Antisense RNA 1 2 3
  • OSTM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OSTM1-AS1 Gene

ORGUL Members for OSTM1-AS1 Gene

Previous GeneCards Identifiers for OSTM1-AS1 Gene

  • GC06P108446

Summaries for OSTM1-AS1 Gene

GeneCards Summary for OSTM1-AS1 Gene

OSTM1-AS1 (OSTM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTM1-AS1 Gene

Genomics for OSTM1-AS1 Gene

Genomic Location for OSTM1-AS1 Gene

Start:
108,123,515 bp from pter
End:
108,159,395 bp from pter
Size:
35,881 bases
Orientation:
Plus strand

Genomic View for OSTM1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OSTM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTM1-AS1 Gene

No data available for Regulatory Elements for OSTM1-AS1 Gene

Proteins for OSTM1-AS1 Gene

Post-translational modifications for OSTM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTM1-AS1 Gene

Domains for OSTM1-AS1 Gene

Gene Families for OSTM1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OSTM1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

Function for OSTM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OSTM1-AS1 Gene

Localization for OSTM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSTM1-AS1 Gene

Pathways for OSTM1-AS1 Gene

SuperPathways for OSTM1-AS1 Gene

No Data Available

Interacting Proteins for OSTM1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSTM1-AS1 Gene

None

No data available for Pathways by source for OSTM1-AS1 Gene

Transcripts for OSTM1-AS1 Gene

mRNA/cDNA for OSTM1-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTM1-AS1 Gene

OSTM1 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate OSTM1-AS1
    • Block miRNA regulation of OSTM1-AS1 using miScript Target Protectors

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for OSTM1-AS1 Gene

    No ASD Table

    Relevant External Links for OSTM1-AS1 Gene

    GeneLoc Exon Structure for
    OSTM1-AS1
    ECgene alternative splicing isoforms for
    OSTM1-AS1

    Expression for OSTM1-AS1 Gene

    mRNA expression in normal human tissues for OSTM1-AS1 Gene

    mRNA differential expression in normal tissues according to GTEx for OSTM1-AS1 Gene

    This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (9.8), Brain - Caudate (basal ganglia) (9.3), Brain - Amygdala (6.7), Brain - Putamen (basal ganglia) (5.8), Brain - Frontal Cortex (BA9) (5.0), Brain - Cortex (5.0), Brain - Anterior cingulate cortex (BA24) (4.1), and Brain - Hippocampus (4.0).

    SOURCE GeneReport for Unigene cluster for OSTM1-AS1 Gene Hs.221513

    genes like me logo Genes that share expressions with OSTM1-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for OSTM1-AS1 Gene

    Orthologs for OSTM1-AS1 Gene

    Evolution for OSTM1-AS1 Gene

    ENSEMBL:
    Gene Tree for OSTM1-AS1 (if available)
    TreeFam:
    Gene Tree for OSTM1-AS1 (if available)

    No data available for Orthologs for OSTM1-AS1 Gene

    Paralogs for OSTM1-AS1 Gene

    No data available for Paralogs for OSTM1-AS1 Gene

    Variants for OSTM1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for OSTM1-AS1 Gene

    SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
    rs75331 -- 108,158,510(+) ATTTT(C/T)TTTTC nc-transcript-variant
    rs127503 -- 108,158,429(+) CCCTC(A/G)TAAGT nc-transcript-variant
    rs170123 -- 108,132,606(+) GCCTC(A/C)CAAAT intron-variant
    rs170124 -- 108,135,562(+) ACCTT(A/C)ATACC intron-variant
    rs170125 -- 108,148,716(+) ataac(G/T)gagaa intron-variant

    Relevant External Links for OSTM1-AS1 Gene

    HapMap Linkage Disequilibrium report
    OSTM1-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OSTM1-AS1 Gene

    Disorders for OSTM1-AS1 Gene

    No disorders were found for OSTM1-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

    Publications for OSTM1-AS1 Gene

    1. Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. (PMID: 12079282) Abrahams B.S. … Venkatesh B. (Genomics 2002) 3

    Products for OSTM1-AS1 Gene

    Sources for OSTM1-AS1 Gene

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