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Aliases for OSTM1-AS1 Gene

Subcategory (RNA class) for OSTM1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OSTM1-AS1 Gene

  • OSTM1 Antisense RNA 1 2 3 5
  • OSTM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OSTM1-AS1 Gene

Previous GeneCards Identifiers for OSTM1-AS1 Gene

  • GC06P108446

Summaries for OSTM1-AS1 Gene

GeneCards Summary for OSTM1-AS1 Gene

OSTM1-AS1 (OSTM1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTM1-AS1 Gene

Genomics for OSTM1-AS1 Gene

Regulatory Elements for OSTM1-AS1 Gene

Enhancers for OSTM1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F108895 1.4 FANTOM5 Ensembl ENCODE 4.6 +773.1 773056 2.9 ZNF76 KLF17 RAD21 ZEB1 YY1 FOS KLF7 ZNF280D SP3 YY2 ARMC2 RNU6-653P ARMC2-AS1 OSTM1-AS1 FOXO3 CD164 ATP5J2P2 RPS12P13
GH06F108157 0.7 Ensembl 8.9 +34.3 34302 1.4 CBX3 SUZ12 RNF2 MAX CBX2 ZMYM3 CBX8 RCOR2 CTBP2 KDM1A OSTM1-AS1 NR2E1 GC06M108139
GH06F108113 2.1 VISTA Ensembl 0.4 -8.2 -8184 3.8 CTCF ESRRA SUZ12 CREB3L1 TEAD4 ZMYM3 ZNF48 ZNF644 ZNF2 RAD21 NR2E1 OSTM1 OSTM1-AS1 ENSG00000238490
GH06F108127 0.9 ENCODE 0.8 +4.5 4507 0.2 ELF3 PKNOX1 MLX INSM2 FEZF1 ZNF2 RARA YY1 FOS CREM NR2E1 OSTM1 OSTM1-AS1 GC06M108139
GH06F108117 1.7 Ensembl 0.4 -5.4 -5382 1.5 L3MBTL2 SUZ12 RNF2 HLF CBX2 JUNB CEBPB CBX8 ZBTB48 CTBP2 NR2E1 OSTM1 SEC63 OSTM1-AS1 ENSG00000238490
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSTM1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OSTM1-AS1 Gene

Chromosome:
6
Start:
108,123,515 bp from pter
End:
108,159,392 bp from pter
Size:
35,878 bases
Orientation:
Plus strand

Genomic View for OSTM1-AS1 Gene

Genes around OSTM1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSTM1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSTM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTM1-AS1 Gene

Proteins for OSTM1-AS1 Gene

Post-translational modifications for OSTM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTM1-AS1 Gene

Domains & Families for OSTM1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

Function for OSTM1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSTM1-AS1 Gene

Localization for OSTM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSTM1-AS1 Gene

Pathways & Interactions for OSTM1-AS1 Gene

SuperPathways for OSTM1-AS1 Gene

No Data Available

Interacting Proteins for OSTM1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSTM1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSTM1-AS1 Gene

Transcripts for OSTM1-AS1 Gene

mRNA/cDNA for OSTM1-AS1 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTM1-AS1 Gene

OSTM1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OSTM1-AS1 Gene

No ASD Table

Relevant External Links for OSTM1-AS1 Gene

GeneLoc Exon Structure for
OSTM1-AS1
ECgene alternative splicing isoforms for
OSTM1-AS1

Expression for OSTM1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OSTM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OSTM1-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x9.8), Brain - Caudate (basal ganglia) (x9.3), Brain - Amygdala (x6.7), Brain - Putamen (basal ganglia) (x5.8), Brain - Frontal Cortex (BA9) (x5.0), Brain - Cortex (x5.0), Brain - Anterior cingulate cortex (BA24) (x4.1), and Brain - Hippocampus (x4.0).

SOURCE GeneReport for Unigene cluster for OSTM1-AS1 Gene:

Hs.221513
genes like me logo Genes that share expression patterns with OSTM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OSTM1-AS1 Gene

Orthologs for OSTM1-AS1 Gene

Evolution for OSTM1-AS1 Gene

ENSEMBL:
Gene Tree for OSTM1-AS1 (if available)
TreeFam:
Gene Tree for OSTM1-AS1 (if available)

No data available for Orthologs for OSTM1-AS1 Gene

Paralogs for OSTM1-AS1 Gene

No data available for Paralogs for OSTM1-AS1 Gene

Variants for OSTM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OSTM1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10618184 -- 108,137,862(+) TTTTC(-/TT)TTTTT intron-variant
rs10630490 -- 108,143,803(+) CTAAT(-/TT)TTTTT intron-variant
rs1076942 -- 108,147,747(+) TATTT(A/C/G)AATAT intron-variant
rs1109642 -- 108,157,230(+) CAGTA(A/G)TTTCT nc-transcript-variant
rs111303923 -- 108,154,174(+) GGGCA(A/C/T)GGTGG intron-variant

Relevant External Links for OSTM1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSTM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OSTM1-AS1 Gene

Disorders for OSTM1-AS1 Gene

Relevant External Links for OSTM1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSTM1-AS1

No disorders were found for OSTM1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSTM1-AS1 Gene

Publications for OSTM1-AS1 Gene

  1. Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. (PMID: 12079282) Abrahams B.S. … Venkatesh B. (Genomics 2002) 3 64

Products for OSTM1-AS1 Gene

Sources for OSTM1-AS1 Gene

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