Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OSTM1-AS1 Gene

Subcategory (RNA class) for OSTM1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for OSTM1-AS1 Gene

  • OSTM1 Antisense RNA 1 2 3
  • OSTM1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OSTM1-AS1 Gene

ORGUL Members for OSTM1-AS1 Gene

Summaries for OSTM1-AS1 Gene

GeneCards Summary for OSTM1-AS1 Gene

OSTM1-AS1 (OSTM1 Antisense RNA 1) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTM1-AS1 Gene

Genomics for OSTM1-AS1 Gene

Genomic Location for OSTM1-AS1 Gene

Start:
108,123,515 bp from pter
End:
108,159,395 bp from pter
Size:
35,881 bases
Orientation:
Plus strand

Genomic View for OSTM1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OSTM1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTM1-AS1 Gene

No data available for Regulatory Elements for OSTM1-AS1 Gene

Proteins for OSTM1-AS1 Gene

Post-translational modifications for OSTM1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTM1-AS1 Gene

Domains for OSTM1-AS1 Gene

Gene Families for OSTM1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OSTM1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

Function for OSTM1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OSTM1-AS1 Gene

Localization for OSTM1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSTM1-AS1 Gene

Pathways for OSTM1-AS1 Gene

SuperPathways for OSTM1-AS1 Gene

No Data Available

Interacting Proteins for OSTM1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSTM1-AS1 Gene

None

No data available for Pathways by source for OSTM1-AS1 Gene

Transcripts for OSTM1-AS1 Gene

mRNA/cDNA for OSTM1-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTM1-AS1 Gene

OSTM1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OSTM1-AS1 Gene

No ASD Table

Relevant External Links for OSTM1-AS1 Gene

GeneLoc Exon Structure for
OSTM1-AS1
ECgene alternative splicing isoforms for
OSTM1-AS1

Expression for OSTM1-AS1 Gene

mRNA expression in normal human tissues for OSTM1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OSTM1-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (9.8), Brain - Caudate (basal ganglia) (9.3), Brain - Amygdala (6.7), Brain - Putamen (basal ganglia) (5.8), Brain - Frontal Cortex (BA9) (5.0), Brain - Cortex (5.0), Brain - Anterior cingulate cortex (BA24) (4.1), and Brain - Hippocampus (4.0).

SOURCE GeneReport for Unigene cluster for OSTM1-AS1 Gene Hs.221513

genes like me logo Genes that share expressions with OSTM1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for OSTM1-AS1 Gene

Orthologs for OSTM1-AS1 Gene

Evolution for OSTM1-AS1 Gene

ENSEMBL:
Gene Tree for OSTM1-AS1 (if available)
TreeFam:
Gene Tree for OSTM1-AS1 (if available)

No data available for Orthologs for OSTM1-AS1 Gene

Paralogs for OSTM1-AS1 Gene

No data available for Paralogs for OSTM1-AS1 Gene

Variants for OSTM1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OSTM1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs75331 -- 108,158,510(+) ATTTT(C/T)TTTTC nc-transcript-variant
rs127503 -- 108,158,429(+) CCCTC(A/G)TAAGT nc-transcript-variant
rs170123 -- 108,132,606(+) GCCTC(A/C)CAAAT intron-variant
rs170124 -- 108,135,562(+) ACCTT(A/C)ATACC intron-variant
rs170125 -- 108,148,716(+) ataac(G/T)gagaa intron-variant

Relevant External Links for OSTM1-AS1 Gene

HapMap Linkage Disequilibrium report
OSTM1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OSTM1-AS1 Gene

Disorders for OSTM1-AS1 Gene

No disorders were found for OSTM1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for OSTM1-AS1 Gene

Publications for OSTM1-AS1 Gene

  1. Novel vertebrate genes and putative regulatory elements identified at kidney disease and NR2E1/fierce loci. (PMID: 12079282) Abrahams B.S. … Venkatesh B. (Genomics 2002) 3

Products for OSTM1-AS1 Gene

Sources for OSTM1-AS1 Gene

Back to Top

Content