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Aliases for OSTCP1 Gene

Aliases for OSTCP1 Gene

  • Oligosaccharyltransferase Complex Subunit Pseudogene 1 2 3 5
  • Oligosaccharyltransferase Complex Subunit-Like 2
  • DC2 Protein-Like 2
  • OSTCL 3
  • DC2L 3

External Ids for OSTCP1 Gene

Previous HGNC Symbols for OSTCP1 Gene

  • OSTCL

Previous GeneCards Identifiers for OSTCP1 Gene

  • GC06M159265

Summaries for OSTCP1 Gene

GeneCards Summary for OSTCP1 Gene

OSTCP1 (Oligosaccharyltransferase Complex Subunit Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTCP1 Gene

Genomics for OSTCP1 Gene

Regulatory Elements for OSTCP1 Gene

Enhancers for OSTCP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G158847 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.5 4511 11.2 MLX CREB3L1 YBX1 FEZF1 SLC30A9 ZNF548 SP3 MCM3 TBX21 MEF2D EZR SYTL3 LOC442272 RNU6-293P DYNLT1 TAGAP OSTCP1
GH06G158860 0.9 ENCODE dbSUPER 0.7 -3.2 -3234 1.1 ZNF639 ATF1 L3MBTL2 MNT HDAC8 ATF2 ZNF592 FOSL1 RAD51 ATF3 EZR OSTCP1 C6orf99
GH06G158861 0.8 ENCODE dbSUPER 0.7 -4.5 -4524 1.1 GATA3 ZSCAN5C CEBPB ZBTB33 DYNLT1 OSTCP1 C6orf99
GH06G158866 1.4 ENCODE dbSUPER 0.4 -11.3 -11268 4.6 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 SIN3A ZNF2 ZNF766 CBX5 ZNF143 EZR C6orf99 OSTCP1
GH06G158863 1.1 FANTOM5 ENCODE dbSUPER 0.4 -6.6 -6605 2.3 CTCF ZNF146 ZNF280D MCM3 ZSCAN4 ZBTB33 ZNF24 EZR C6orf99 OSTCP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSTCP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OSTCP1 Gene

Chromosome:
6
Start:
158,841,117 bp from pter
End:
158,857,632 bp from pter
Size:
16,516 bases
Orientation:
Minus strand

Genomic View for OSTCP1 Gene

Genes around OSTCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSTCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSTCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTCP1 Gene

Proteins for OSTCP1 Gene

Post-translational modifications for OSTCP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTCP1 Gene

Domains & Families for OSTCP1 Gene

Suggested Antigen Peptide Sequences for OSTCP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for OSTCP1 Gene

Function for OSTCP1 Gene

Phenotypes for OSTCP1 Gene

genes like me logo Genes that share phenotypes with OSTCP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSTCP1 Gene

Localization for OSTCP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSTCP1 Gene

Pathways & Interactions for OSTCP1 Gene

SuperPathways for OSTCP1 Gene

No Data Available

Interacting Proteins for OSTCP1 Gene

Gene Ontology (GO) - Biological Process for OSTCP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSTCP1 Gene

Drugs & Compounds for OSTCP1 Gene

No Compound Related Data Available

Transcripts for OSTCP1 Gene

mRNA/cDNA for OSTCP1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTCP1 Gene

Oligosaccharyltransferase complex subunit pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OSTCP1 Gene

No ASD Table

Relevant External Links for OSTCP1 Gene

GeneLoc Exon Structure for
OSTCP1
ECgene alternative splicing isoforms for
OSTCP1

Expression for OSTCP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OSTCP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OSTCP1 Gene:

OSTCP1

SOURCE GeneReport for Unigene cluster for OSTCP1 Gene:

Hs.487035
genes like me logo Genes that share expression patterns with OSTCP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSTCP1 Gene

Orthologs for OSTCP1 Gene

Evolution for OSTCP1 Gene

ENSEMBL:
Gene Tree for OSTCP1 (if available)
TreeFam:
Gene Tree for OSTCP1 (if available)

No data available for Orthologs for OSTCP1 Gene

Paralogs for OSTCP1 Gene

No data available for Paralogs for OSTCP1 Gene

Variants for OSTCP1 Gene

Sequence variations from dbSNP and Humsavar for OSTCP1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000055567 -- 158,840,808(+) AATTC(A/G)GAGGC downstream-variant-500B
rs1000779505 -- 158,858,645(+) CATAG(C/T)CAGAG upstream-variant-2KB
rs1000853640 -- 158,852,550(+) TGCTG(A/G)TCTGG intron-variant
rs1000860054 -- 158,842,752(+) TCTTA(A/G)CAAAG intron-variant
rs1001024327 -- 158,846,858(+) CAGCA(C/T)TTTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OSTCP1 Gene

Variant ID Type Subtype PubMed ID
esv3327787 CNV duplication 20981092
nsv969461 CNV duplication 23825009

Relevant External Links for OSTCP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSTCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OSTCP1 Gene

Disorders for OSTCP1 Gene

Relevant External Links for OSTCP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSTCP1

No disorders were found for OSTCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSTCP1 Gene

Publications for OSTCP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for OSTCP1 Gene

Sources for OSTCP1 Gene

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