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Aliases for OSTCP1 Gene

Aliases for OSTCP1 Gene

  • Oligosaccharyltransferase Complex Subunit Pseudogene 1 2 3 5
  • Oligosaccharyltransferase Complex Subunit-Like 2
  • DC2 Protein-Like 2
  • OSTCL 3
  • DC2L 3

External Ids for OSTCP1 Gene

Previous HGNC Symbols for OSTCP1 Gene

  • OSTCL

Previous GeneCards Identifiers for OSTCP1 Gene

  • GC06M159265

Summaries for OSTCP1 Gene

GeneCards Summary for OSTCP1 Gene

OSTCP1 (Oligosaccharyltransferase Complex Subunit Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSTCP1 Gene

Genomics for OSTCP1 Gene

Regulatory Elements for OSTCP1 Gene

Enhancers for OSTCP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F158847 1.9 FANTOM5 Ensembl ENCODE 16.9 +4.5 4511 11.2 CREB3L1 MLX FEZF1 YBX1 SLC30A9 ZNF548 MCM3 SP3 TBX21 MEF2D LOC442272 OSTCP1 ENSG00000238019 SYNJ2-IT1 LOC105378078 EZR SYTL3 RNU6-293P DYNLT1 TAGAP
GH06F158029 1.7 FANTOM5 Ensembl ENCODE 16.2 +826.2 826158 3.1 PKNOX1 ZFP64 FEZF1 ZNF2 GLIS2 FOS KLF7 ZNF263 TSHZ1 MBD2 SYNJ2 SYNJ2-IT1 LOC105378078 ENSG00000238019 LOC442272 OSTCP1 ENSG00000234361 SNX9 LDHAL6FP GC06M158055
GH06F158024 1.3 Ensembl ENCODE 16.2 +831.1 831132 4.8 WRNIP1 SIN3A FEZF1 ZNF2 ZNF416 ZNF143 FOS ZNF548 ZNF263 KAT8 SYNJ2-IT1 LOC105378078 ENSG00000238019 OSTCP1 LOC442272 SYNJ2 ENSG00000234361 LOC100420839 DYNLT1 RNU6-786P
GH06F158866 1.1 ENCODE 16.5 -11.3 -11268 4.6 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A ZNF2 CBX5 ZNF143 ZNF207 OSTCP1 LOC442272 ENSG00000238019 LOC105378078 SYNJ2-IT1 EZR C6orf99
GH06F158641 1.1 ENCODE 16.2 +213.0 213028 5.7 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS OSTCP1 ENSG00000238019 LOC442272 SYNJ2-IT1 LOC105378078 ENSG00000234361 DYNLT1 SYTL3 TMEM181 GTF2H5
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSTCP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OSTCP1 Gene

Chromosome:
6
Start:
158,841,117 bp from pter
End:
158,857,632 bp from pter
Size:
16,516 bases
Orientation:
Minus strand

Genomic View for OSTCP1 Gene

Genes around OSTCP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSTCP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSTCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSTCP1 Gene

Proteins for OSTCP1 Gene

Post-translational modifications for OSTCP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSTCP1 Gene

Domains & Families for OSTCP1 Gene

Suggested Antigen Peptide Sequences for OSTCP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for OSTCP1 Gene

Function for OSTCP1 Gene

Phenotypes for OSTCP1 Gene

genes like me logo Genes that share phenotypes with OSTCP1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSTCP1 Gene

Localization for OSTCP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSTCP1 Gene

Pathways & Interactions for OSTCP1 Gene

SuperPathways for OSTCP1 Gene

No Data Available

Interacting Proteins for OSTCP1 Gene

Gene Ontology (GO) - Biological Process for OSTCP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSTCP1 Gene

Transcripts for OSTCP1 Gene

mRNA/cDNA for OSTCP1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OSTCP1 Gene

Oligosaccharyltransferase complex subunit pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OSTCP1 Gene

No ASD Table

Relevant External Links for OSTCP1 Gene

GeneLoc Exon Structure for
OSTCP1
ECgene alternative splicing isoforms for
OSTCP1

Expression for OSTCP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OSTCP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OSTCP1 Gene:

OSTCP1

SOURCE GeneReport for Unigene cluster for OSTCP1 Gene:

Hs.487035
genes like me logo Genes that share expression patterns with OSTCP1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OSTCP1 Gene

Orthologs for OSTCP1 Gene

Evolution for OSTCP1 Gene

ENSEMBL:
Gene Tree for OSTCP1 (if available)
TreeFam:
Gene Tree for OSTCP1 (if available)

No data available for Orthologs for OSTCP1 Gene

Paralogs for OSTCP1 Gene

No data available for Paralogs for OSTCP1 Gene

Variants for OSTCP1 Gene

Sequence variations from dbSNP and Humsavar for OSTCP1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111229943 -- 158,847,358(+) CCCGT(C/T)GTGGG intron-variant
rs111230266 -- 158,853,069(+) AGATA(C/T)ACCAC intron-variant
rs111320558 -- 158,852,349(+) TGAAG(A/C)GGATG intron-variant
rs111459759 -- 158,849,208(+) TAGTC(C/T)CAGCT intron-variant
rs111645676 -- 158,852,822(+) ACCCA(A/T)GTAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OSTCP1 Gene

Variant ID Type Subtype PubMed ID
esv3327787 CNV duplication 20981092
nsv969461 CNV duplication 23825009

Relevant External Links for OSTCP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSTCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OSTCP1 Gene

Disorders for OSTCP1 Gene

Relevant External Links for OSTCP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSTCP1

No disorders were found for OSTCP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSTCP1 Gene

Publications for OSTCP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for OSTCP1 Gene

Sources for OSTCP1 Gene

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