OSTC Gene
protein-coding GIFtS : 45
GCID: GC04 P109572
oligosaccharyltransferase complex subunit
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Aliasesfor OSTC gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Oligosaccharyltransferase Complex Subunit 1 2 Hydrophobic Protein HSF-282 3 DC21 Oligosaccharyltransferase Complex Subunit OSTC2
Export aliases for OSTC gene to outside databases Previous GC identifers: GC04P109793 GC04P105303
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Summariesfor OSTC gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor OSTC gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000004.11 NC_018915.1 NT_016354.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the OSTC gene promoter: SRF AML1a SRF (504 AA) XBP-1 Meis-1b Egr-2 MZF-1 Zic1 Meis-1a Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for OSTC Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OSTC
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 4q25 Ensembl cytogenetic band: 4q25 HGNC cytogenetic band: 4q25 OSTC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P109572: view genomic region
(about GC identifiers )
Start:
109,571,740 bp from pter
End:
109,588,978 bp from pter
Size:
17,239 bases
Orientation:
plus strand
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Proteinsfor OSTC gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: OSTC_HUMAN, Q9NRP0 (See
protein sequence )Recommended Name: Oligosaccharyltransferase complex subunit OSTC Size : 149 amino acids; 16829 Da
Subunit : Component of the oligosaccharyltransferase (OST) complex. OST seems to exist in different forms which containat least RPN1, RPN2, OST48, DAD1, OSTC, KRTCAP2 and either STT3A or STT3B. OST can form stable complexes with the Sec61 complex or with both the Sec61 and TRAP complexes (By similarity)
Subcellular location : Membrane; Multi-pass membrane protein (Potential)
Sequence caution : Sequence=AAF28985.1; Type=Erroneous initiation; Sequence=AAF65186.1; Type=Erroneous initiation;
Secondary accessions : A8MYS2 B2R5H1 Q9P075 Q9P1R4Explore the universe of human proteins at neXtProt for OSTC: NX_Q9NRP0 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NRP0 OSTC Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (3 alternative transcripts):
NP_001254746.1 NP_001254747.1 NP_067050.1 ENSEMBL proteins: ENSP00000354676 ENSP00000426167 Human Recombinant Protein Products for OSTC: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
OSTC for ontologies About GeneDecksing OSTC Antibody Products: Assay Products for OSTC:
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Protein
Domains / Familiesfor OSTC gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
OSTC for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9NRP0 ProtoNet protein and cluster: Q9NRP0
UniProtKB/Swiss-Prot: OSTC_HUMAN, Q9NRP0 Similarity : Belongs to the OSTC family
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Functionfor OSTC gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004579 contributes to dolichyl-diphosphooligosaccharide-protein glycotransferase activity
IC 15835887
OSTC for ontologies About GeneDecksing Phenotypes: 2 GenomeRNAi human phenotypes for OSTC :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OSTC (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OSTCOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: OSTC (NM_021227 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OSTC Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OSTC
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Pathways & Interactionsfor OSTC gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OSTC STRING Interaction
Network Preview (showing 5 interactants - click image to see 20)5/20 Interacting proteins for OSTC (Q9NRP0 3 ENSP00000354676 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 20 )About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0018279 protein N-linked glycosylation via asparagine
IC 15835887
OSTC for ontologies About GeneDecksing
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Drugs & Compoundsfor OSTC gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for OSTC Search CenterWatch for drugs/clinical trials and news about OSTC
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Transcriptsfor OSTC gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for OSTC gene (3 alternative transcripts): NM_001267817.1 NM_001267818.1 NM_021227.3 Unigene Cluster for OSTC:
Oligosaccharyltransferase complex subunit Hs.445803 [show with all ESTs ] Unigene Representative Sequence: BF698884 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000361564 (uc003hzb.1 ) ENST00000510556 ENST00000505745 ENST00000512478 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OSTC (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OSTCOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: OSTC (NM_021227 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OSTC Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OSTC
Additional cDNA sequence: AF068297.1 AF161425.1 AF201937.1 AF343342.1 AK312185.1 BC016321.1 BC054857.1
20 DOTS entries : DT.449886 DT.100693052
DT.100693017 DT.100874983 DT.100693010 DT.99994326 DT.100753275 DT.92467749 DT.92467759 DT.92467761 DT.92467775 DT.95269008 DT.121248087 DT.92020858 DT.92467758 DT.95269007 DT.95269022 DT.121405124 DT.86855522 DT.95192977 24/757 AceView cDNA sequences (see all 757 ):
CA312148 CR597339 AA776979 CD676840 CA309939 BQ777650 BE042617 BX282080 CB136790 BQ772330 BQ574432 BX414917 AA300003 BF724501 AA099179 BQ013984 AW273470 BG546572 AA976910 BM561622 AA369186 BE567837 BU607621 CA313777 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for OSTC About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b SP1 :               SP2 :         -       SP3 :     -          
ECgene alternative splicing isoforms for OSTC
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Expression for OSTC gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section OSTC expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: AGAATGAAACAbout this image OSTC expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
2 LifeMap In Vivo Development Anatomical Compartments/Cells Tissue Anatomical Compartment
Cell Category (developmental path) Bone Thoracic Rib Bone Cartilage Meckel's Cartilage Cartilage Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See OSTC Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for OSTC SOURCE GeneReport for Unigene cluster: Hs.445803 SABiosciences Custom PCR Arrays for OSTC Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for OSTCBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat OSTC QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat OSTC QIAGEN QuantiFast Probe-based Assays in human , mouse , rat OSTC
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Orthologsfor OSTC gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for OSTC gene from 8/25 species (see all 25 ) About this table
ENSEMBL Gene Tree for OSTC (if available)TreeFam Gene Tree for OSTC (if available)
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Paralogsfor OSTC gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for OSTC gene 5 SIMAP similar genes for OSTC using alignment to 2 protein entries: OSTC_HUMAN (see all proteins ):OSTCL RBMS2 NLN MST132 ACTR10
OSTC for paralogs About GeneDecksing 5/9 Pseudogenes.org Pseudogenes for OSTC (see all 9 )PGOHUM00000262983 PGOHUM00000234776 PGOHUM00000243945 PGOHUM00000244001 PGOHUM00000244692
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Genomic Variantsfor OSTC gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 4 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for OSTC (109571740 - 109588978 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for OSTC: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing OSTC
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Disorders
/ Diseasesfor OSTC gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
OSTC for disorders About GeneDecksing 4 diseases for OSTC : About MalaCards alcohol dependence alcoholism intrahepatic cholangiocarcinoma cholangiocarcinoma Human Genome Epidemiology (HuGE) Navigator: OSTC (1 document)Export disorders for OSTC gene to outside databases
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Publicationsfor OSTC gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for OSTC gene, integrated from 9 sources (see all 14 ): (articles sorted by number of sources associating them with OSTC) Utopia : connect your pdf to the dynamic world of online information
Proteomic analysis of mammalian oligosaccharyltransferase reveals multiple subcomplexes that contain Sec61, TRAP, and two potential new subunits. (PubMed id 15835887) 1 , 3 Shibatani T.... Skach W.R. (2005) Identification of novel ATP13A2 interactors and their role in a-synuclein misfolding and toxicity. (PubMed id 22645275) 1 Usenovic M....Krainc D. (2012) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) A systematic gene-based screen of chr4q22-q32 identif ies association of a novel susceptibility gene, DKK2, with the quantitative tra it of alcohol dependence symptom counts. (PubMed id 20332099) 1 Kalsi G....Riley B.P. (2010) Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791) 1 Wang A.G....Kim N.S. (2006) The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974) 2 Sjoeblom T.... Velculescu V.E. (2006) Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621) 2 Hillier L.W....Wilson R.K. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for OSTC gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing OSTC gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing OSTC gene
(According to HUGE )
About This Section --
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Specialized Databases showing OSTC gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for OSTC Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for OSTC gene: Search GeneIP for patents involving OSTC GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor OSTC gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for OSTC OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for OSTC OriGene Protein Over-expression Lysate for OSTC Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for OSTC OriGene 3'-UTR Clone for OSTC OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OSTC OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OSTC Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for OSTC OriGene Custom Protein Services for OSTC OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OSTC QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing OSTC QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OSTC QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat OSTC QIAGEN QuantiFast Probe-based Assays in human , mouse , rat OSTC QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat OSTC
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OSTC Proteins, Antibodies, CLIAs, and ELISAs
Search ThermoFisher Antibodies for OSTC
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OSTC
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Aliases for OSTC
Databases for OSTC
Disorders / Diseases for OSTC
Domains / Families for OSTC
Drugs / Compounds for OSTC
Expression for OSTC
Function for OSTC
Genomic Views for OSTC
Intellectual Property for OSTC
Orthologs for OSTC
Paralogs for OSTC
Pathways / Interactions for OSTC
Products for OSTC
Proteins for OSTC
Publications for OSTC
Search Box for OSTC
Summaries for OSTC
Transcripts for OSTC
Variants for OSTC
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