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Aliases for OSR1 Gene

Aliases for OSR1 Gene

  • Odd-Skipped Related Transciption Factor 1 2 3 5
  • ODD 3 4
  • Odd-Skipped Related 1 (Drosophila) 2
  • Odd-Skipped (Drosophila) Homolog 2
  • Protein Odd-Skipped-Related 1 3
  • Odd-Skipped Related 1 3
  • Odd-Skipped Homolog 3

External Ids for OSR1 Gene

Previous HGNC Symbols for OSR1 Gene

  • ODD

Previous GeneCards Identifiers for OSR1 Gene

  • GC03P037496
  • GC03P038020
  • GC03P038167
  • GC03P038182
  • GC02M019473
  • GC02M019308
  • GC02M019551

Summaries for OSR1 Gene

GeneCards Summary for OSR1 Gene

OSR1 (Odd-Skipped Related Transciption Factor 1) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is OSR2.

UniProtKB/Swiss-Prot for OSR1 Gene

  • Transcription factor that plays a role in the regulation of embryonic heart and urogenital development.

Gene Wiki entry for OSR1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSR1 Gene

Genomics for OSR1 Gene

Regulatory Elements for OSR1 Gene

Enhancers for OSR1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G019854 0.7 dbSUPER 10.9 -497.3 -497286 2.2 ATF1 TEAD1 HLF ZHX2 CEBPB ZNF644 TEAD3 SSRP1 ZNF316 CREB1 OSR1 LINC00954 CISD1P1
GH02G019137 1.5 FANTOM5 Ensembl ENCODE 3.4 +217.9 217889 6.3 PKNOX1 FOXA2 MLX ZFP64 ARID4B DMAP1 TCF12 SLC30A9 GATA2 FOS ENSG00000271991 OSR1 GC02P019090 GC02P019209
GH02G019378 0.4 VISTA 11.9 -20.4 -20382 1.2 MNT OSR1 GC02P019379 GC02P019428
GH02G018625 0.8 FANTOM5 ENCODE 4.4 +732.1 732068 2.0 JUND GATA2 SIN3A FOS NT5C1B NT5C1B-RDH14 RNU6-1215P OSR1 GC02M018608 GC02P018659
GH02G019361 1.4 Ensembl ENCODE dbSUPER 0.7 -3.9 -3934 2.4 DEAF1 SIN3A BMI1 DMAP1 ZBTB40 DNMT3B ZNF48 RAD21 ZNF143 THAP11 OSR1 GC02P019379
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSR1 on UCSC Golden Path with GeneCards custom track

Promoters for OSR1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000113616 353 1001 CTCF SUZ12 SIN3A RBBP5 RAD21 POLR2A MAFK EZH2 PHF8 MAZ

Genomic Location for OSR1 Gene

Chromosome:
2
Start:
19,351,485 bp from pter
End:
19,358,653 bp from pter
Size:
7,169 bases
Orientation:
Minus strand

Genomic View for OSR1 Gene

Genes around OSR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSR1 Gene

Proteins for OSR1 Gene

  • Protein details for OSR1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TAX0-OSR1_HUMAN
    Recommended name:
    Protein odd-skipped-related 1
    Protein Accession:
    Q8TAX0
    Secondary Accessions:
    • B3KV97
    • D6W521

    Protein attributes for OSR1 Gene

    Size:
    266 amino acids
    Molecular mass:
    29611 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OSR1 Gene

Post-translational modifications for OSR1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for OSR1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for OSR1 Gene

Domains & Families for OSR1 Gene

Gene Families for OSR1 Gene

Protein Domains for OSR1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for OSR1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TAX0

UniProtKB/Swiss-Prot:

OSR1_HUMAN :
  • Belongs to the Odd C2H2-type zinc-finger protein family.
Family:
  • Belongs to the Odd C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with OSR1: view

Function for OSR1 Gene

Molecular function for OSR1 Gene

GENATLAS Biochemistry:
oxidative-stress responsive 1,homolog to the human SOK1 (Ste20/oxidant stress response kinase-1),widely expressed
UniProtKB/Swiss-Prot Function:
Transcription factor that plays a role in the regulation of embryonic heart and urogenital development.

Gene Ontology (GO) - Molecular Function for OSR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0004674 protein serine/threonine kinase activity IMP 16669787
GO:0005515 protein binding IPI 16669787
GO:0019901 protein kinase binding IPI 16669787
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with OSR1: view
genes like me logo Genes that share phenotypes with OSR1: view

Animal Models for OSR1 Gene

MGI Knock Outs for OSR1:

Animal Model Products

CRISPR Products

miRNA for OSR1 Gene

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for OSR1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for OSR1 Gene

Localization for OSR1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OSR1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OSR1 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for OSR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005829 cytosol IEA,ISS --
GO:0019898 extrinsic component of membrane ISS,IEA --
genes like me logo Genes that share ontologies with OSR1: view

Pathways & Interactions for OSR1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for OSR1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter ISS --
GO:0001655 urogenital system development ISS,IEA --
GO:0001656 metanephros development IEA --
GO:0001657 ureteric bud development ISS,IEA --
GO:0001823 mesonephros development ISS,IEA --
genes like me logo Genes that share ontologies with OSR1: view

No data available for Pathways by source and SIGNOR curated interactions for OSR1 Gene

Drugs & Compounds for OSR1 Gene

No Compound Related Data Available

Transcripts for OSR1 Gene

mRNA/cDNA for OSR1 Gene

Unigene Clusters for OSR1 Gene

Odd-skipped related 1 (Drosophila):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for OSR1

Alternative Splicing Database (ASD) splice patterns (SP) for OSR1 Gene

No ASD Table

Relevant External Links for OSR1 Gene

GeneLoc Exon Structure for
OSR1
ECgene alternative splicing isoforms for
OSR1

Expression for OSR1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OSR1 Gene

mRNA differential expression in normal tissues according to GTEx for OSR1 Gene

This gene is overexpressed in Artery - Aorta (x7.6), Bladder (x6.1), and Esophagus - Muscularis (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of OSR1 Gene:

OSR1

SOURCE GeneReport for Unigene cluster for OSR1 Gene:

Hs.123933

mRNA Expression by UniProt/SwissProt for OSR1 Gene:

Q8TAX0-OSR1_HUMAN
Tissue specificity: Expressed in adult colon, small intestine, prostate, testis, and fetal lung.

Evidence on tissue expression from TISSUES for OSR1 Gene

  • Nervous system(4.2)
  • Pancreas(4)
genes like me logo Genes that share expression patterns with OSR1: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSR1 Gene

Orthologs for OSR1 Gene

This gene was present in the common ancestor of animals.

Orthologs for OSR1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OSR1 34 35
  • 99.62 (n)
cow
(Bos Taurus)
Mammalia OSR1 34 35
  • 91.98 (n)
oppossum
(Monodelphis domestica)
Mammalia OSR1 35
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OSR1 34 35
  • 90.6 (n)
rat
(Rattus norvegicus)
Mammalia Osr1 34
  • 90.6 (n)
mouse
(Mus musculus)
Mammalia Osr1 34 16 35
  • 89.85 (n)
chicken
(Gallus gallus)
Aves OSR1 34 35
  • 77.95 (n)
lizard
(Anolis carolinensis)
Reptilia OSR1 35
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia osr1 34
  • 74.26 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.13607 34
zebrafish
(Danio rerio)
Actinopterygii osr1 34 35
  • 71.96 (n)
Dr.13499 34
fruit fly
(Drosophila melanogaster)
Insecta fray 36
  • 56 (a)
drm 35
  • 44 (a)
ManyToMany
odd 35
  • 25 (a)
ManyToMany
sob 35
  • 21 (a)
ManyToMany
bowl 35
  • 15 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea Y59A8B.23 36
  • 63 (a)
odd-2 35
  • 36 (a)
ManyToMany
odd-1 35
  • 34 (a)
ManyToMany
Species where no ortholog for OSR1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for OSR1 Gene

ENSEMBL:
Gene Tree for OSR1 (if available)
TreeFam:
Gene Tree for OSR1 (if available)

Paralogs for OSR1 Gene

Paralogs for OSR1 Gene

(2) SIMAP similar genes for OSR1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OSR1: view

Variants for OSR1 Gene

Sequence variations from dbSNP and Humsavar for OSR1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1001345533 -- 19,356,957(+) GCGCC(C/T)GGGGG intron-variant
rs1001696742 -- 19,353,021(+) TTTAA(A/G)GAATT intron-variant
rs1001885948 -- 19,357,545(+) TAGCG(-/GACA)GTCAG intron-variant, utr-variant-5-prime
rs1001947254 -- 19,358,679(+) TCCAC(C/T)ACCCC upstream-variant-2KB
rs1001959898 -- 19,351,860(+) TGCCT(C/T)TCCTC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for OSR1 Gene

Variant ID Type Subtype PubMed ID
nsv819849 CNV gain 19587683

Variation tolerance for OSR1 Gene

Residual Variation Intolerance Score: 38.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.61; 13.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OSR1 Gene

Human Gene Mutation Database (HGMD)
OSR1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSR1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OSR1 Gene

Disorders for OSR1 Gene

Relevant External Links for OSR1

Genetic Association Database (GAD)
OSR1
Human Genome Epidemiology (HuGE) Navigator
OSR1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSR1

No disorders were found for OSR1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSR1 Gene

Publications for OSR1 Gene

  1. Molecular cloning and characterization of OSR1 on human chromosome 2p24. (PMID: 12119563) Katoh M. (Int. J. Mol. Med. 2002) 2 3 4 64
  2. Investigation of genetic susceptibility factors for human longevity - a targeted nonsynonymous SNP study. (PMID: 20800603) Flachsbart F. … Nebel A. (Mutat. Res. 2010) 3 46 64
  3. Candidate gene/loci studies in cleft lip/palate and dental anomalies finds novel susceptibility genes for clefts. (PMID: 18978678) Vieira A.R. … Marazita M.L. (Genet. Med. 2008) 3 46 64
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for OSR1 Gene

  • Addgene plasmids for OSR1

Sources for OSR1 Gene

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