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Aliases for OSGEP Gene

Aliases for OSGEP Gene

  • O-Sialoglycoprotein Endopeptidase 2 3 4 5
  • T(6)A37 Threonylcarbamoyladenosine Biosynthesis Protein OSGEP 3 4
  • TRNA Threonylcarbamoyladenosine Biosynthesis Protein OSGEP 3 4
  • N6-L-Threonylcarbamoyladenine Synthase 3 4
  • T(6)A Synthase 3 4
  • HOSGEP 3 4
  • GCPL1 3 4
  • Probable TRNA Threonylcarbamoyladenosine Biosynthesis Protein OSGEP 3
  • Probable O-Sialoglycoprotein Endopeptidase 3
  • EC 3.4.24.57 63
  • EC 2.3.1.234 4
  • OSGEP1 3
  • PRSMG1 3
  • KAE1 3

External Ids for OSGEP Gene

Previous GeneCards Identifiers for OSGEP Gene

  • GC14M018285
  • GC14M014702
  • GC14M018904
  • GC14M018905
  • GC14M019985
  • GC14M020915
  • GC14M001036

Summaries for OSGEP Gene

GeneCards Summary for OSGEP Gene

OSGEP (O-Sialoglycoprotein Endopeptidase) is a Protein Coding gene. Among its related pathways are Gene Expression and tRNA processing. GO annotations related to this gene include transferase activity, transferring acyl groups other than amino-acyl groups and transferase activity, transferring acyl groups.

UniProtKB/Swiss-Prot for OSGEP Gene

  • Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.

Gene Wiki entry for OSGEP Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSGEP Gene

Genomics for OSGEP Gene

Regulatory Elements for OSGEP Gene

Promoters for OSGEP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around OSGEP on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the OSGEP gene promoter:

Genomic Location for OSGEP Gene

Chromosome:
14
Start:
20,446,411 bp from pter
End:
20,455,108 bp from pter
Size:
8,698 bases
Orientation:
Minus strand

Genomic View for OSGEP Gene

Genes around OSGEP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSGEP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSGEP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSGEP Gene

Proteins for OSGEP Gene

  • Protein details for OSGEP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NPF4-OSGEP_HUMAN
    Recommended name:
    Probable tRNA N6-adenosine threonylcarbamoyltransferase
    Protein Accession:
    Q9NPF4
    Secondary Accessions:
    • Q6IAC3

    Protein attributes for OSGEP Gene

    Size:
    335 amino acids
    Molecular mass:
    36427 Da
    Cofactor:
    Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
    Quaternary structure:
    • Component of the EKC/KEOPS complex composed of at least TP53RK, TPRKB, OSGEP and LAGE3; the whole complex dimerizes. Interacts with PRAME.

neXtProt entry for OSGEP Gene

Proteomics data for OSGEP Gene at MOPED

Post-translational modifications for OSGEP Gene

  • Ubiquitination at Lys 185
  • Modification sites at PhosphoSitePlus

Other Protein References for OSGEP Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

Domains & Families for OSGEP Gene

Protein Domains for OSGEP Gene

Suggested Antigen Peptide Sequences for OSGEP Gene

Graphical View of Domain Structure for InterPro Entry

Q9NPF4

UniProtKB/Swiss-Prot:

OSGEP_HUMAN :
  • Belongs to the KAE1 / TsaD family.
Family:
  • Belongs to the KAE1 / TsaD family.
genes like me logo Genes that share domains with OSGEP: view

No data available for Gene Families for OSGEP Gene

Function for OSGEP Gene

Molecular function for OSGEP Gene

UniProtKB/Swiss-Prot CatalyticActivity:
L-threonylcarbamoyladenylate + adenine(37) in tRNA = AMP + N(6)-L-threonylcarbamoyladenine(37) in tRNA.
UniProtKB/Swiss-Prot Function:
Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. OSGEP likely plays a direct catalytic role in this reaction, but requires other protein(s) of the complex to fulfill this activity.

Enzyme Numbers (IUBMB) for OSGEP Gene

genes like me logo Genes that share phenotypes with OSGEP: view

Animal Model Products

  • Taconic Biosciences Mouse Models for OSGEP

No data available for Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSGEP Gene

Localization for OSGEP Gene

Subcellular locations from UniProtKB/Swiss-Prot for OSGEP Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OSGEP Gene COMPARTMENTS Subcellular localization image for OSGEP gene
Compartment Confidence
nucleus 4
cytosol 3
plasma membrane 3
cytoskeleton 2
endoplasmic reticulum 2
extracellular 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for OSGEP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000408 EKC/KEOPS complex IBA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with OSGEP: view

Pathways & Interactions for OSGEP Gene

genes like me logo Genes that share pathways with OSGEP: view

Pathways by source for OSGEP Gene

Gene Ontology (GO) - Biological Process for OSGEP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002949 tRNA threonylcarbamoyladenosine modification IBA --
GO:0010467 gene expression TAS --
genes like me logo Genes that share ontologies with OSGEP: view

No data available for SIGNOR curated interactions for OSGEP Gene

Drugs & Compounds for OSGEP Gene

No Compound Related Data Available

Transcripts for OSGEP Gene

Unigene Clusters for OSGEP Gene

O-sialoglycoprotein endopeptidase:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OSGEP Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b · 6c · 6d ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11 ^
SP1: - - - - - - - - -
SP2: - -
SP3: - - -
SP4: - - - - - -
SP5: - - - - - - - - - - -
SP6: - - - - -
SP7: -
SP8:
SP9:
SP10: -
SP11: -
SP12:

ExUns: 12a · 12b · 12c
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for OSGEP Gene

GeneLoc Exon Structure for
OSGEP
ECgene alternative splicing isoforms for
OSGEP

Expression for OSGEP Gene

mRNA expression in normal human tissues for OSGEP Gene

Protein differential expression in normal tissues from HIPED for OSGEP Gene

This gene is overexpressed in Heart (9.2) and Lymph node (6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for OSGEP Gene



SOURCE GeneReport for Unigene cluster for OSGEP Gene Hs.525196

mRNA Expression by UniProt/SwissProt for OSGEP Gene

Q9NPF4-OSGEP_HUMAN
Tissue specificity: Widely expressed at low level. Expressed in heart, placenta, liver, kidney, lung, brain, skeletal muscle and pancreas.
genes like me logo Genes that share expression patterns with OSGEP: view

Protein tissue co-expression partners for OSGEP Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for OSGEP Gene

Orthologs for OSGEP Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for OSGEP Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia OSGEP 35
  • 92.74 (n)
  • 97.31 (a)
OSGEP 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OSGEP 35
  • 89.05 (n)
  • 96.12 (a)
OSGEP 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Osgep 35
  • 86.87 (n)
  • 93.43 (a)
Osgep 16
Osgep 36
  • 93 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia OSGEP 35
  • 100 (n)
  • 100 (a)
OSGEP 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Osgep 35
  • 87.96 (n)
  • 94.93 (a)
oppossum
(Monodelphis domestica)
Mammalia OSGEP 36
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OSGEP 36
  • 92 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia OSGEP 36
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia osgep 35
  • 72.44 (n)
  • 84.48 (a)
Str.3476 35
African clawed frog
(Xenopus laevis)
Amphibia osgep-prov 35
zebrafish
(Danio rerio)
Actinopterygii osgep 35
  • 73.63 (n)
  • 83.88 (a)
wufj38e02 35
osgep 36
  • 84 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG4933 37
  • 69 (a)
CG4933 35
  • 66.67 (n)
  • 72.24 (a)
CG4933 36
  • 70 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006952 35
  • 66.57 (n)
  • 73.73 (a)
worm
(Caenorhabditis elegans)
Secernentea Y71H2AM.1 37
  • 70 (a)
Y71H2AM.1 35
  • 62.69 (n)
  • 69.85 (a)
Y71H2AM.1 36
  • 69 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AEL316W 35
  • 61.53 (n)
  • 68.28 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F21450g 35
  • 61.13 (n)
  • 67.37 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes KAE1 35
  • 62.64 (n)
  • 68.28 (a)
KAE1 36
  • 59 (a)
OneToOne
KAE1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G22720 35
  • 63.34 (n)
  • 70.69 (a)
rice
(Oryza sativa)
Liliopsida Os.25488 35
Os05g0194600 35
  • 63.67 (n)
  • 70.36 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5464 35
bread mold
(Neurospora crassa)
Ascomycetes NCU03836 35
  • 64.85 (n)
  • 70.69 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes pgp2 35
  • 59.82 (n)
  • 65.86 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6759 36
  • 75 (a)
OneToOne
Species with no ortholog for OSGEP:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for OSGEP Gene

ENSEMBL:
Gene Tree for OSGEP (if available)
TreeFam:
Gene Tree for OSGEP (if available)

Paralogs for OSGEP Gene

No data available for Paralogs for OSGEP Gene

Variants for OSGEP Gene

Sequence variations from dbSNP and Humsavar for OSGEP Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs938881 -- 20,449,283(-) TGGAC(A/T)TCCTC intron-variant
rs938882 -- 20,448,828(-) TCGTA(C/T)GCTTA intron-variant
rs938883 -- 20,448,799(-) AAGCT(A/G)GTTGA reference, synonymous-codon
rs938884 -- 20,448,557(-) TGCCA(C/G)ATGCT intron-variant
rs938885 -- 20,448,402(-) cagga(G/T)aagta intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OSGEP Gene

Variant ID Type Subtype PubMed ID
esv23438 CNV Gain+Loss 19812545

Variation tolerance for OSGEP Gene

Residual Variation Intolerance Score: 51.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.95; 19.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OSGEP Gene

HapMap Linkage Disequilibrium report
OSGEP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OSGEP Gene

Disorders for OSGEP Gene

Relevant External Links for OSGEP

Genetic Association Database (GAD)
OSGEP
Human Genome Epidemiology (HuGE) Navigator
OSGEP
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSGEP

No disorders were found for OSGEP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSGEP Gene

Publications for OSGEP Gene

  1. Sequencing analysis of a putative human O-sialoglycoprotein endopeptidase gene (OSGEP) and analysis of a bidirectional promoter between the OSGEP and APEX genes. (PMID: 12039036) Seki Y. … Matsui H. (Gene 2002) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  4. Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS. (PMID: 23455922) Varjosalo M. … Superti-Furga G. (Nat. Methods 2013) 3
  5. A high-throughput approach for measuring temporal changes in the interactome. (PMID: 22863883) Kristensen A.R. … Foster L.J. (Nat. Methods 2012) 3

Products for OSGEP Gene

Sources for OSGEP Gene

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