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Aliases for OSER1-AS1 Gene

Subcategory (RNA class) for OSER1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OSER1-AS1 Gene

  • OSER1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for OSER1-AS1 Gene

Previous GeneCards Identifiers for OSER1-AS1 Gene

  • GC20P042842

Summaries for OSER1-AS1 Gene

GeneCards Summary for OSER1-AS1 Gene

OSER1-AS1 (OSER1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSER1-AS1 Gene

Genomics for OSER1-AS1 Gene

Regulatory Elements for OSER1-AS1 Gene

Enhancers for OSER1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G044206 1.4 ENCODE dbSUPER 16.2 -1.1 -1071 6.1 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 PPARGC1A SSRP1 OSER1 OSER1-AS1 FITM2 IFT52 JPH2
GH20G044216 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +7.9 7879 3.7 ELF3 RB1 ZSCAN4 ARID4B ZNF48 RAD21 ZNF143 MIXL1 DEK THAP11 OSER1 FITM2 LINC01430 LINC01620 OSER1-AS1 JPH2 GDAP1L1
GH20G044173 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.5 -29.2 -29174 15.7 HDGF PKNOX1 MLX SIN3A YBX1 DMAP1 ZNF48 TCF12 ZNF121 ZNF302 JPH2 FITM2 OSER1 IFT52 SGK2 OSER1-AS1 GC20P044130
GH20G044202 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.8 -6.7 -6747 3.0 FOXA2 BRCA1 FOS TSHZ1 ZNF592 MAFF SMARCA4 STAT3 HMBOX1 SP7 OSER1 OSER1-AS1 JPH2
GH20G044384 1.2 ENCODE dbSUPER 7.4 +174.1 174052 1.3 ELF3 ATF1 WRNIP1 ARID4B DNMT3B ZNF48 ZSCAN9 RAD21 ZEB1 RFX5 FITM2 LINC01430 LINC01620 IFT52 OSER1-AS1 OSER1 ENSG00000233376 LOC105372629
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSER1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for OSER1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000137486 -660 2601 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 PPARGC1A SSRP1

Genomic Location for OSER1-AS1 Gene

Chromosome:
20
Start:
44,210,960 bp from pter
End:
44,226,027 bp from pter
Size:
15,068 bases
Orientation:
Plus strand

Genomic View for OSER1-AS1 Gene

Genes around OSER1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSER1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSER1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSER1-AS1 Gene

Proteins for OSER1-AS1 Gene

Post-translational modifications for OSER1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSER1-AS1 Gene

Domains & Families for OSER1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSER1-AS1 Gene

Function for OSER1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSER1-AS1 Gene

Localization for OSER1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSER1-AS1 Gene

Pathways & Interactions for OSER1-AS1 Gene

SuperPathways for OSER1-AS1 Gene

No Data Available

Interacting Proteins for OSER1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSER1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSER1-AS1 Gene

Drugs & Compounds for OSER1-AS1 Gene

No Compound Related Data Available

Transcripts for OSER1-AS1 Gene

mRNA/cDNA for OSER1-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OSER1-AS1 Gene

No ASD Table

Relevant External Links for OSER1-AS1 Gene

GeneLoc Exon Structure for
OSER1-AS1
ECgene alternative splicing isoforms for
OSER1-AS1

Expression for OSER1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OSER1-AS1 Gene

genes like me logo Genes that share expression patterns with OSER1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OSER1-AS1 Gene

Orthologs for OSER1-AS1 Gene

Evolution for OSER1-AS1 Gene

ENSEMBL:
Gene Tree for OSER1-AS1 (if available)
TreeFam:
Gene Tree for OSER1-AS1 (if available)

No data available for Orthologs for OSER1-AS1 Gene

Paralogs for OSER1-AS1 Gene

No data available for Paralogs for OSER1-AS1 Gene

Variants for OSER1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OSER1-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000020641 -- 44,225,939(+) TGAGA(C/T)TGTAC nc-transcript-variant
rs1000152439 -- 44,214,647(+) CTGAA(C/T)GTGTC intron-variant
rs1000369003 -- 44,209,140(+) CTTAA(C/T)AGCAT intron-variant, upstream-variant-2KB
rs1000395503 -- 44,220,200(+) TTTTT(A/C)TTTTT intron-variant
rs1000485325 -- 44,220,332(+) CTCCC(A/G)AGTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OSER1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv98n6 CNV deletion 16902084
esv3567984 CNV loss 25503493
nsv1057847 CNV loss 25217958
nsv458983 CNV loss 19166990
nsv507908 OTHER sequence alteration 20534489
nsv586064 CNV loss 21841781

Relevant External Links for OSER1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSER1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OSER1-AS1 Gene

Disorders for OSER1-AS1 Gene

Relevant External Links for OSER1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSER1-AS1

No disorders were found for OSER1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSER1-AS1 Gene

Publications for OSER1-AS1 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OSER1-AS1 Gene

Sources for OSER1-AS1 Gene

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