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Aliases for OSER1-AS1 Gene

Subcategory (RNA class) for OSER1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OSER1-AS1 Gene

  • OSER1 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for OSER1-AS1 Gene

Previous GeneCards Identifiers for OSER1-AS1 Gene

  • GC20P042842

Summaries for OSER1-AS1 Gene

GeneCards Summary for OSER1-AS1 Gene

OSER1-AS1 (OSER1 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSER1-AS1 Gene

Genomics for OSER1-AS1 Gene

Regulatory Elements for OSER1-AS1 Gene

Enhancers for OSER1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F044206 1.2 ENCODE 16.2 -1.1 -1071 6.1 HDGF PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 OSER1 OSER1-AS1 LINC01728 ENSG00000237555 RPL27AP FITM2 IFT52 JPH2
GH20F044216 1.4 FANTOM5 Ensembl ENCODE 9.8 +7.9 7879 3.7 ELF3 ARID4B ZNF48 RAD21 ZNF143 DEK MIXL1 THAP11 ZNF654 SP5 OSER1 FITM2 LINC01430 LINC01620 OSER1-AS1 JPH2 GDAP1L1
GH20F044173 1.6 FANTOM5 Ensembl ENCODE 7.5 -29.2 -29174 15.7 HDGF PKNOX1 MLX YBX1 DMAP1 ZNF48 ZNF121 ZNF302 ZNF207 SMARCA4 JPH2 FITM2 OSER1 SGK2 OSER1-AS1 GC20P044130
GH20F044215 1.1 Ensembl ENCODE 9.5 +4.4 4421 0.4 ARID4B ZNF48 ZSCAN9 RAD21 RFX5 ZNF143 MIXL1 THAP11 KLF11 ZNF654 FITM2 OSER1-AS1 OSER1 GDAP1L1
GH20F044202 1.5 FANTOM5 Ensembl ENCODE 5.8 -6.7 -6747 3.0 TBP INSM2 BRCA1 DNMT3B ZEB1 RFX5 ZNF366 SCRT2 RCOR1 FOS OSER1 OSER1-AS1 JPH2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OSER1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OSER1-AS1 Gene

Chromosome:
20
Start:
44,210,960 bp from pter
End:
44,226,027 bp from pter
Size:
15,068 bases
Orientation:
Plus strand

Genomic View for OSER1-AS1 Gene

Genes around OSER1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OSER1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OSER1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSER1-AS1 Gene

Proteins for OSER1-AS1 Gene

Post-translational modifications for OSER1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OSER1-AS1 Gene

Domains & Families for OSER1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OSER1-AS1 Gene

Function for OSER1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OSER1-AS1 Gene

Localization for OSER1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OSER1-AS1 Gene

Pathways & Interactions for OSER1-AS1 Gene

SuperPathways for OSER1-AS1 Gene

No Data Available

Interacting Proteins for OSER1-AS1 Gene

Gene Ontology (GO) - Biological Process for OSER1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OSER1-AS1 Gene

Transcripts for OSER1-AS1 Gene

mRNA/cDNA for OSER1-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OSER1-AS1 Gene

No ASD Table

Relevant External Links for OSER1-AS1 Gene

GeneLoc Exon Structure for
OSER1-AS1
ECgene alternative splicing isoforms for
OSER1-AS1

Expression for OSER1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OSER1-AS1 Gene

genes like me logo Genes that share expression patterns with OSER1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OSER1-AS1 Gene

Orthologs for OSER1-AS1 Gene

Evolution for OSER1-AS1 Gene

ENSEMBL:
Gene Tree for OSER1-AS1 (if available)
TreeFam:
Gene Tree for OSER1-AS1 (if available)

No data available for Orthologs for OSER1-AS1 Gene

Paralogs for OSER1-AS1 Gene

No data available for Paralogs for OSER1-AS1 Gene

Variants for OSER1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OSER1-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1018435 -- 44,225,305(-) CTCCA(G/T)ACTGT nc-transcript-variant
rs10626085 -- 44,211,951(+) TAGTC(-/AACT)AACTA intron-variant, upstream-variant-2KB
rs10664913 -- 44,218,602(+) AACTA(-/AG)AGAAG intron-variant, upstream-variant-2KB
rs10664983 -- 44,218,603(+) TAAGA(-/GA)AGTGT intron-variant, upstream-variant-2KB
rs10718240 -- 44,220,212(+) TTTTC(-/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OSER1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv98n6 CNV deletion 16902084
esv3567984 CNV loss 25503493
nsv1057847 CNV loss 25217958
nsv458983 CNV loss 19166990
nsv507908 OTHER sequence alteration 20534489
nsv586064 CNV loss 21841781

Relevant External Links for OSER1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OSER1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OSER1-AS1 Gene

Disorders for OSER1-AS1 Gene

Relevant External Links for OSER1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OSER1-AS1

No disorders were found for OSER1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OSER1-AS1 Gene

Publications for OSER1-AS1 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli E.T. … Goldstein D.B. (Eur. J. Hum. Genet. 2010) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OSER1-AS1 Gene

Sources for OSER1-AS1 Gene

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