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Aliases for OSBPL1A Gene

Aliases for OSBPL1A Gene

  • Oxysterol Binding Protein-Like 1A 2 3
  • ORP1 3 4 6
  • Oxysterol Binding Protein-Like 1B 2 3
  • OSBP-Related Protein 1 3 4
  • OSBPL1B 3 4
  • ORP-1 3 4
  • Oxysterol-Binding Protein-Related Protein 1 Variant 1 3
  • Oxysterol-Binding Protein-Related Protein 1 Variant 2 3
  • Oxysterol-Binding Protein-Related Protein 1 3
  • OSBPL1 4
  • OSBP8 4

External Ids for OSBPL1A Gene

Previous HGNC Symbols for OSBPL1A Gene

  • OSBPL1B

Previous GeneCards Identifiers for OSBPL1A Gene

  • GC18M021634
  • GC18M021473
  • GC18M019994
  • GC18M019993
  • GC18M019996
  • GC18M021742
  • GC18M018598

Summaries for OSBPL1A Gene

Entrez Gene Summary for OSBPL1A Gene

  • This gene encodes a member of the oxysterol-binding protein (OSBP) family, a group of intracellular lipid receptors. Most members contain an N-terminal pleckstrin homology domain and a highly conserved C-terminal OSBP-like sterol-binding domain, although some members contain only the sterol-binding domain. Transcript variants derived from alternative promoter usage and/or alternative splicing exist; they encode different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OSBPL1A Gene

OSBPL1A (Oxysterol Binding Protein-Like 1A) is a Protein Coding gene. Among its related pathways are Class I MHC mediated antigen processing and presentation and MHC class II antigen presentation. GO annotations related to this gene include phospholipid binding and cholesterol binding. An important paralog of this gene is OSBP.

UniProtKB/Swiss-Prot for OSBPL1A Gene

  • Binds phospholipids; exhibits strong binding to phosphatidic acid and weak binding to phosphatidylinositol 3-phosphate (By similarity). Stabilizes GTP-bound RAB7A on late endosomes/lysosomes and alters functional properties of late endocytic compartments via its interaction with RAB7A.

Gene Wiki entry for OSBPL1A Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OSBPL1A Gene

Genomics for OSBPL1A Gene

Regulatory Elements for OSBPL1A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for OSBPL1A Gene

Start:
24,162,044 bp from pter
End:
24,397,882 bp from pter
Size:
235,839 bases
Orientation:
Minus strand

Genomic View for OSBPL1A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OSBPL1A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OSBPL1A Gene

Proteins for OSBPL1A Gene

  • Protein details for OSBPL1A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXW6-OSBL1_HUMAN
    Recommended name:
    Oxysterol-binding protein-related protein 1
    Protein Accession:
    Q9BXW6
    Secondary Accessions:
    • B7Z7D3
    • Q9BZF5
    • Q9NW87

    Protein attributes for OSBPL1A Gene

    Size:
    950 amino acids
    Molecular mass:
    108470 Da
    Quaternary structure:
    • Interacts with VAPA (By similarity). Interacts with the GTP-bound form of RAB7A. Interacts with OAS1B (By similarity).
    SequenceCaution:
    • Sequence=AAG53407.2; Type=Miscellaneous discrepancy; Note=Unlikely isoform. Aberrant splice sites.; Evidence={ECO:0000305};

    Alternative splice isoforms for OSBPL1A Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for OSBPL1A Gene

Proteomics data for OSBPL1A Gene at MOPED

Post-translational modifications for OSBPL1A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for OSBPL1A Gene

Domains for OSBPL1A Gene

Gene Families for OSBPL1A Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing
  • OSBP :Oxysterol binding proteins

Graphical View of Domain Structure for InterPro Entry

Q9BXW6

UniProtKB/Swiss-Prot:

OSBL1_HUMAN :
  • Q9BXW6
Domain:
  • Contains 1 PH domain.
Family:
  • Belongs to the OSBP family.
Similarity:
  • Contains 3 ANK repeats.
genes like me logo Genes that share domains with OSBPL1A: view

Function for OSBPL1A Gene

Molecular function for OSBPL1A Gene

UniProtKB/Swiss-Prot Function:
Binds phospholipids; exhibits strong binding to phosphatidic acid and weak binding to phosphatidylinositol 3-phosphate (By similarity). Stabilizes GTP-bound RAB7A on late endosomes/lysosomes and alters functional properties of late endocytic compartments via its interaction with RAB7A.

Gene Ontology (GO) - Molecular Function for OSBPL1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16176980
GO:0005543 phospholipid binding NAS 11279184
GO:0015485 cholesterol binding IDA 17428193
genes like me logo Genes that share ontologies with OSBPL1A: view

Phenotypes for OSBPL1A Gene

genes like me logo Genes that share phenotypes with OSBPL1A: view

Animal Model Products

CRISPR Products

miRNA for OSBPL1A Gene

miRTarBase miRNAs that target OSBPL1A

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OSBPL1A

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for OSBPL1A Gene

Localization for OSBPL1A Gene

Subcellular locations from UniProtKB/Swiss-Prot for OSBPL1A Gene

Late endosome. Note=Colocalizes with RAB7A, RAB9A and LAMP1 in late endosomes.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OSBPL1A Gene COMPARTMENTS Subcellular localization image for OSBPL1A gene
Compartment Confidence
endosome 5
cytosol 4
lysosome 4
nucleus 4
vacuole 4
mitochondrion 1

Gene Ontology (GO) - Cellular Components for OSBPL1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IC 11279184
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005765 lysosomal membrane TAS --
genes like me logo Genes that share ontologies with OSBPL1A: view

Pathways for OSBPL1A Gene

genes like me logo Genes that share pathways with OSBPL1A: view

Pathways by source for OSBPL1A Gene

2 Reactome pathways for OSBPL1A Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Lipoprotein Signaling & Cholesterol Metabolism in human,mouse,rat

Gene Ontology (GO) - Biological Process for OSBPL1A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006869 lipid transport IEA --
GO:0008203 cholesterol metabolic process NAS 10588946
GO:0016192 vesicle-mediated transport NAS 11279184
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II TAS --
genes like me logo Genes that share ontologies with OSBPL1A: view

Compounds for OSBPL1A Gene

(12) HMDB Compounds for OSBPL1A Gene

Compound Synonyms Cas Number PubMed IDs
PA(16:0/16:0)
  • Dipalmitoylphosphatidic acid
7091-44-3
PA(16:0/18:1(11Z))
  • PA(16:0/18:1n7)
Not Available
PA(16:0/18:1(9Z))
  • PA(16:0/18:1n9)
Not Available
PA(16:0/18:2(9Z,12Z))
  • PA(34:2)
Not Available
PA(16:0e/18:0)
  • 2-octadecanoyl-1-hexadecyl-sn-glycero-3-phosphate
Not Available
genes like me logo Genes that share compounds with OSBPL1A: view

Transcripts for OSBPL1A Gene

Unigene Clusters for OSBPL1A Gene

Oxysterol binding protein-like 1A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OSBPL1A

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OSBPL1A Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^
SP1: - - - - - - - -
SP2: - - - - - - - -
SP3: -
SP4: - -
SP5:
SP6:

ExUns: 23 ^ 24 ^ 25 ^ 26a · 26b ^ 27a · 27b ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33
SP1:
SP2: - -
SP3:
SP4:
SP5:
SP6:

Relevant External Links for OSBPL1A Gene

GeneLoc Exon Structure for
OSBPL1A
ECgene alternative splicing isoforms for
OSBPL1A

Expression for OSBPL1A Gene

mRNA expression in normal human tissues for OSBPL1A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for OSBPL1A Gene

This gene is overexpressed in Serum (25.1) and Heart (23.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for OSBPL1A Gene

SOURCE GeneReport for Unigene cluster for OSBPL1A Gene Hs.370725

genes like me logo Genes that share expressions with OSBPL1A: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for OSBPL1A Gene

Orthologs for OSBPL1A Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for OSBPL1A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia OSBPL1A 35
  • 90.39 (n)
  • 94.21 (a)
OSBPL1A 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OSBPL1A 35
  • 92.35 (n)
  • 95.16 (a)
OSBPL1A 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Osbpl1a 35
  • 87.75 (n)
  • 92 (a)
Osbpl1a 16
Osbpl1a 36
  • 92 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia OSBPL1A 35
  • 99.58 (n)
  • 99.47 (a)
OSBPL1A 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Osbpl1a 35
  • 87.61 (n)
  • 92 (a)
oppossum
(Monodelphis domestica)
Mammalia OSBPL1A 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OSBPL1A 36
  • 83 (a)
OneToOne
chicken
(Gallus gallus)
Aves OSBPL1A 35
  • 78.14 (n)
  • 82.11 (a)
OSBPL1A 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia OSBPL1A 36
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia osbpl1a 35
  • 76.35 (n)
  • 86.5 (a)
Str.18003 35
zebrafish
(Danio rerio)
Actinopterygii osbpl1a 35
  • 67.23 (n)
  • 70.02 (a)
osbpl1a 36
  • 68 (a)
OneToMany
OSBPL1A (2 of 2) 36
  • 74 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG3860 37
  • 51 (a)
CG3860 35
  • 55.77 (n)
  • 54.96 (a)
CG3860 36
  • 51 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007687 35
  • 58.46 (n)
  • 59.95 (a)
worm
(Caenorhabditis elegans)
Secernentea F14H8.1 37
  • 34 (a)
obr-2 36
  • 36 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes OSH2 36
  • 19 (a)
ManyToMany
SWH1 36
  • 22 (a)
ManyToMany
-- 38
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.3550 35
Species with no ortholog for OSBPL1A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for OSBPL1A Gene

ENSEMBL:
Gene Tree for OSBPL1A (if available)
TreeFam:
Gene Tree for OSBPL1A (if available)

Paralogs for OSBPL1A Gene

Paralogs for OSBPL1A Gene

genes like me logo Genes that share paralogs with OSBPL1A: view

Variants for OSBPL1A Gene

Sequence variations from dbSNP and Humsavar for OSBPL1A Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs2408 -- 24,249,659(+) gtggc(A/G)agcaa intron-variant
rs12498 -- 24,162,409(+) ATTAT(A/G)TAATG utr-variant-3-prime
rs166708 -- 24,270,322(-) AGGGT(A/G)GTTTA intron-variant
rs172208 -- 24,166,716(+) AAGCA(A/C)AAGGA intron-variant
rs173111 -- 24,190,759(-) CAACT(C/T)TAAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OSBPL1A Gene

Variant ID Type Subtype PubMed ID
nsv909459 CNV Gain 21882294
nsv909460 CNV Gain 21882294
nsv2229 CNV Insertion 18451855
nsv828190 CNV Gain 20364138
esv2476704 CNV Deletion 19546169
nsv512520 CNV Loss 21212237
esv2716867 CNV Deletion 23290073
esv2539637 CNV Deletion 19546169
nsv522361 CNV Loss 19592680

Relevant External Links for OSBPL1A Gene

HapMap Linkage Disequilibrium report
OSBPL1A
Human Gene Mutation Database (HGMD)
OSBPL1A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OSBPL1A Gene

Disorders for OSBPL1A Gene

Relevant External Links for OSBPL1A

Genetic Association Database (GAD)
OSBPL1A
Human Genome Epidemiology (HuGE) Navigator
OSBPL1A

No disorders were found for OSBPL1A Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for OSBPL1A Gene

Publications for OSBPL1A Gene

  1. Novel members of the human oxysterol-binding protein family bind phospholipids and regulate vesicle transport. (PMID: 11279184) Xu Y. … McMaster C.R. (J. Biol. Chem. 2001) 2 3 4 23
  2. Family of human oxysterol binding protein (OSBP) homologues. A novel member implicated in brain sterol metabolism. (PMID: 10588946) Laitinen S. … Ikonen E. (J. Lipid Res. 1999) 2 3 23
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. A genome-wide association study identifies protein quantitative trait loci (pQTLs). (PMID: 18464913) Melzer D. … Ferrucci L. (PLoS Genet. 2008) 3 48
  5. The two variants of oxysterol binding protein-related protein-1 display different tissue expression patterns, have different intracellular localization, and are functionally distinct. (PMID: 12631712) Johansson M. … Olkkonen V.M. (Mol. Biol. Cell 2003) 3 23

Products for OSBPL1A Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Lipoprotein Signaling & Cholesterol Metabolism in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate OSBPL1A
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for OSBPL1A
  • Block miRNA regulation of OSBPL1A using miScript Target Protectors

Sources for OSBPL1A Gene

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