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Aliases for OS9 Gene

Aliases for OS9 Gene

  • Osteosarcoma Amplified 9, Endoplasmic Reticulum Lectin 2 3
  • Endoplasmic Reticulum Lectin 2 2 3
  • Amplified In Osteosarcoma 9 3 4
  • Erlectin 2 2 3
  • Osteosarcoma Amplified 9, Endoplasmic Reticulum Associated Protein 3
  • Protein OS-9 3
  • ERLEC2 3
  • OS-9 3

External Ids for OS9 Gene

Previous GeneCards Identifiers for OS9 Gene

  • GC12P056375
  • GC12P058088
  • GC12P055124

Summaries for OS9 Gene

Entrez Gene Summary for OS9 Gene

  • This gene encodes a protein that is highly expressed in osteosarcomas. This protein binds to the hypoxia-inducible factor 1 (HIF-1), a key regulator of the hypoxic response and angiogenesis, and promotes the degradation of one of its subunits. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. [provided by RefSeq, Jul 2008]

GeneCards Summary for OS9 Gene

OS9 (Osteosarcoma Amplified 9, Endoplasmic Reticulum Lectin) is a Protein Coding gene. Diseases associated with OS9 include hypoxia. Among its related pathways are Translational Control and Hypoxic and oxygen homeostasis regulation of HIF-1-alpha. GO annotations related to this gene include protease binding and glycoprotein binding. An important paralog of this gene is ERLEC1.

UniProtKB/Swiss-Prot for OS9 Gene

  • Lectin which functions in endoplasmic reticulum (ER) quality control and ER-associated degradation (ERAD). May bind terminally misfolded non-glycosylated proteins as well as improperly folded glycoproteins, retain them in the ER, and possibly transfer them to the ubiquitination machinery and promote their degradation. Possible targets include TRPV4.

Gene Wiki entry for OS9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OS9 Gene

Genomics for OS9 Gene

Regulatory Elements for OS9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for OS9 Gene

Start:
57,693,955 bp from pter
End:
57,721,557 bp from pter
Size:
27,603 bases
Orientation:
Plus strand

Genomic View for OS9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OS9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OS9 Gene

Proteins for OS9 Gene

  • Protein details for OS9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13438-OS9_HUMAN
    Recommended name:
    Protein OS-9
    Protein Accession:
    Q13438
    Secondary Accessions:
    • A6NDD1
    • A6NFR7
    • A6NLB2
    • A8K5Q9
    • B4DE28
    • B4DPX1
    • B4E1I6
    • E7ENT8
    • E7EW91
    • F8VUH2
    • G3XA88
    • O00579
    • Q6IBL2
    • Q8IZ58
    • Q9BW99

    Protein attributes for OS9 Gene

    Size:
    667 amino acids
    Molecular mass:
    75562 Da
    Quaternary structure:
    • Probably part of the HRD1 ubiquitin ligase complex composed at least of SYVN1/HRD1 and SEL1L with which it interacts directly. Through this complex it may interact with ERLEC1 and HSPA5. Interacts with DERL2. Interacts with HSP90B1 and CREB3.

    Three dimensional structures from OCA and Proteopedia for OS9 Gene

    Alternative splice isoforms for OS9 Gene

neXtProt entry for OS9 Gene

Proteomics data for OS9 Gene at MOPED

Post-translational modifications for OS9 Gene

No data available for DME Specific Peptides for OS9 Gene

Domains for OS9 Gene

Protein Domains for OS9 Gene

Graphical View of Domain Structure for InterPro Entry

Q13438

UniProtKB/Swiss-Prot:

OS9_HUMAN :
  • Q13438
Domain:
  • Contains 1 PRKCSH domain.
Family:
  • Belongs to the OS-9 family.
genes like me logo Genes that share domains with OS9: view

No data available for Gene Families for OS9 Gene

Function for OS9 Gene

Molecular function for OS9 Gene

GENATLAS Biochemistry: homogeneously staining-region encoded sequence OS9,from an osteosarcoma-cell line,with three isoforms,coamplified with CDK4,PRIM1,SAS in osteosarcoma
UniProtKB/Swiss-Prot Function: Lectin which functions in endoplasmic reticulum (ER) quality control and ER-associated degradation (ERAD). May bind terminally misfolded non-glycosylated proteins as well as improperly folded glycoproteins, retain them in the ER, and possibly transfer them to the ubiquitination machinery and promote their degradation. Possible targets include TRPV4.
UniProtKB/Swiss-Prot Induction: Up-regulated in response to endoplasmic reticulum stress (at protein level).

Gene Ontology (GO) - Molecular Function for OS9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001948 glycoprotein binding IDA 18264092
GO:0002020 protease binding IEA --
GO:0005515 protein binding IPI 15721254
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with OS9: view
genes like me logo Genes that share phenotypes with OS9: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OS9 Gene

Localization for OS9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OS9 Gene

Endoplasmic reticulum lumen.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OS9 Gene COMPARTMENTS Subcellular localization image for OS9 gene
Compartment Confidence
endoplasmic reticulum 5
cytosol 1
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for OS9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000836 Hrd1p ubiquitin ligase complex NAS 18502753
GO:0005783 endoplasmic reticulum --
GO:0005788 endoplasmic reticulum lumen IDA 18264092
GO:0044322 endoplasmic reticulum quality control compartment TAS --
genes like me logo Genes that share ontologies with OS9: view

Pathways for OS9 Gene

genes like me logo Genes that share pathways with OS9: view

Pathways by source for OS9 Gene

2 Cell Signaling Technology pathways for OS9 Gene
1 KEGG pathway for OS9 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for OS9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006605 protein targeting IEA --
GO:0006621 protein retention in ER lumen IDA 18417469
GO:0016567 protein ubiquitination IMP 19084021
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process IMP 18264092
GO:0034976 response to endoplasmic reticulum stress IDA 19084021
genes like me logo Genes that share ontologies with OS9: view

Transcripts for OS9 Gene

Unigene Clusters for OS9 Gene

Osteosarcoma amplified 9, endoplasmic reticulum lectin:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OS9

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OS9 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c · 8d ^ 9a · 9b · 9c ^ 10a · 10b ·
SP1: - - - - -
SP2: - - - -
SP3: - - - - -
SP4: -
SP5: - - - - - - - - - - - - - - - - - - - -
SP6: - - - - -
SP7: - - - -
SP8:
SP9: - - - - - - - - - - - - - -
SP10: - - - - - - - - - - - - - -
SP11: - - - - - - - - - -
SP12: -
SP13: - - - - - - - - - - - - - - - - -
SP14: - - - - - - - - - - - - - - -
SP15:
SP16:
SP17:
SP18:
SP19: -
SP20: - - - - - - - - - -
SP21: - -
SP22: - - - - - - - - - -
SP23: - - - -
SP24: - - - - - - - - - - -
SP25:
SP26:

ExUns: 10c ^ 11a · 11b · 11c ^ 12 ^ 13 ^ 14a · 14b · 14c ^ 15a · 15b ^ 16a · 16b · 16c ^ 17a · 17b · 17c · 17d ^ 18a · 18b ^ 19 ^ 20a · 20b · 20c
SP1: - -
SP2: -
SP3: -
SP4: - -
SP5: -
SP6:
SP7:
SP8: -
SP9: - - - - - - - - - - - - - - - -
SP10: - - - - - - - - - - - -
SP11:
SP12:
SP13: - - - -
SP14: - - -
SP15: -
SP16:
SP17: - - - -
SP18: - - -
SP19:
SP20:
SP21:
SP22:
SP23:
SP24:
SP25: - -
SP26: -

Relevant External Links for OS9 Gene

GeneLoc Exon Structure for
OS9
ECgene alternative splicing isoforms for
OS9

Expression for OS9 Gene

mRNA expression in normal human tissues for OS9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for OS9 Gene

SOURCE GeneReport for Unigene cluster for OS9 Gene Hs.527861

mRNA Expression by UniProt/SwissProt for OS9 Gene

Q13438-OS9_HUMAN
Tissue specificity: Ubiquitously expressed. Found as well in all tumor cell lines analyzed, amplified in sarcomas. Highly expressed in osteosarcoma SJSA-1 and rhabdomyosarcoma Rh30 cell lines. Isoform 2 is the major isoform detected in all cell types examined
genes like me logo Genes that share expressions with OS9: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for OS9 Gene

Orthologs for OS9 Gene

This gene was present in the common ancestor of animals.

Orthologs for OS9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OS9 35
  • 99.75 (n)
  • 99.7 (a)
OS9 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OS9 35
  • 90.64 (n)
  • 90.54 (a)
OS9 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OS9 35
  • 88.36 (n)
  • 89.03 (a)
OS9 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Os9 35
  • 83.28 (n)
  • 81.63 (a)
Os9 16
Os9 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OS9 36
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OS9 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Os9 35
  • 84.26 (n)
  • 83.16 (a)
lizard
(Anolis carolinensis)
Reptilia OS9 36
  • 49 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.19223 35
tropical clawed frog
(Silurana tropicalis)
Amphibia os9 35
  • 57.58 (n)
  • 52.26 (a)
Str.46 35
zebrafish
(Danio rerio)
Actinopterygii os9 35
  • 55.44 (n)
  • 49.08 (a)
os9 36
  • 39 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F48E8.4 36
  • 12 (a)
OneToOne
Species with no ortholog for OS9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for OS9 Gene

ENSEMBL:
Gene Tree for OS9 (if available)
TreeFam:
Gene Tree for OS9 (if available)

Paralogs for OS9 Gene

Paralogs for OS9 Gene

Selected SIMAP similar genes for OS9 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with OS9: view

Variants for OS9 Gene

Sequence variations from dbSNP and Humsavar for OS9 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs10403 -- 57,721,365(+) TGGGA(A/T)TTCCT utr-variant-3-prime
rs14919 -- 57,721,323(+) GTGAT(A/G)TTTGG utr-variant-3-prime
rs701006 -- 57,713,053(+) aatat(A/G)taggt intron-variant
rs701007 -- 57,719,633(-) CACAA(A/C/G/T)GGGAT intron-variant
rs799265 -- 57,718,406(-) ATGTT(C/T)TCCAG reference, synonymous-codon, intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OS9 Gene

Variant ID Type Subtype PubMed ID
nsv508676 CNV Loss 20534489
nsv899121 CNV Loss 21882294
nsv470296 CNV Loss 18288195

Relevant External Links for OS9 Gene

HapMap Linkage Disequilibrium report
OS9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OS9 Gene

Disorders for OS9 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for OS9 Gene including...

Search for OS9 Gene in MalaCards »

Relevant External Links for OS9

Genetic Association Database (GAD)
OS9
Human Genome Epidemiology (HuGE) Navigator
OS9
genes like me logo Genes that share disorders with OS9: view

No data available for UniProtKB/Swiss-Prot for OS9 Gene

Publications for OS9 Gene

  1. Genomic organization of the OS-9 gene amplified in human sarcomas. (PMID: 9498564) Kimura Y. … Yamada M. (J. Biochem. 1997) 2 3 4
  2. Complete sequence analysis of a gene (OS-9) ubiquitously expressed in human tissues and amplified in sarcomas. (PMID: 8634085) Su Y.A. … Meltzer P.S. (Mol. Carcinog. 1996) 2 3 4
  3. OS-9 and GRP94 deliver mutant alpha1-antitrypsin to the Hrd1-SEL1L ubiquitin ligase complex for ERAD. (PMID: 18264092) Christianson J.C. … Kopito R.R. (Nat. Cell Biol. 2008) 2 3 4
  4. Human OS-9, a lectin required for glycoprotein endoplasmic reticulum- associated degradation, recognizes mannose-trimmed N-glycans. (PMID: 19346256) Hosokawa N. … Nagata K. (J. Biol. Chem. 2009) 2 3 4
  5. Mammalian OS-9 is upregulated in response to endoplasmic reticulum stress and facilitates ubiquitination of misfolded glycoproteins. (PMID: 19084021) Alcock F. … Swanton E. (J. Mol. Biol. 2009) 3 4

Products for OS9 Gene

Sources for OS9 Gene

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