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ORC2L Gene

protein-coding   GIFtS: 63

GC02M201483
origin recognition complex, subunit 2-like (yeast)
(Previous names: origin recognition complex, subunit 2 (yeast homolog)-like )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
ORC2 2, 3
Descriptions
origin of replication 2-like 2
origin recognition complex protein 2 homolog 2
origin recognition complex, subunit 2 2
origin recognition complex, subunit 2 (yeast homolog)-like 1
origin recognition complex, subunit 2-like (yeast) 2
External Ids
HGNC: 84881
Entrez Gene: 49992
UniProtKB: Q134163
Ensembl: ENSG000001159427
Search outside databases for aliases for ORC2L gene

Previous GC identifers: GC02M199991 GC02M200499 GC02M201738 GC02M201977 GC02M201600

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for ORC2L:
The origin recognition complex (ORC) is a highly conserved six subunits protein complex essential
for the initiation of the DNA replication in eukaryotic cells. Studies in yeast demonstrated that
ORC binds specifically to origins of replication and serves as a platform for the assembly of
additional initiation factors such as Cdc6 and Mcm proteins. The protein encoded by this gene is a
subunit of the ORC complex. This protein forms a core complex with ORC3L, -4L, and -5L. It also
interacts with CDC45L and MCM10, which are proteins known to be important for the initiation of
DNA replication. This protein has been demonstrated to specifically associate with the origin of
replication of Epstein-Barr virus in human cells, and is thought to be required for DNA
replication from viral origin of replication. [provided by RefSeq]

UniProtKB/Swiss-Prot: ORC2_HUMAN, Q13416
Function: Component of the origin recognition complex (ORC) that binds origins of replication. It
has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the
ARS consensus sequence (ACS) of origins of replication in an ATP-dependent manner

Gene Wiki entry for ORC2L

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the ORC2L gene  

Entrez Gene cytogenetic band: 2q33   Ensembl cytogenetic band:  2q33.1   HGNC cytogenetic band: 2q33

ORC2L Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M201483:     (about GC identifiers)

Start:
201,483,139 bp from pter
End:
201,536,655 bp from pter
Size:
53,517 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000002.10  NT_005403.16  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: ORC2_HUMAN, Q13416 (See protein sequence)
Recommended Name: Origin recognition complex subunit 2  
Size: 577 amino acids; 65972 Da
Subunit: ORC is composed of six subunits. Interacts with DBF4 (By similarity). Interacts with MCM10
Subcellular location: Nucleus
Secondary accessions: Q13204

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_006181.1  

    ENSEMBL proteins: 
    ENSP00000234296 ENSP00000386390 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (ORC2)
    Human Recombinant Proteins from Abnova (ORC2L)
                  OriGene Purified Recombinant Human Protein: ORC2L 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000808 origin recognition complex IEA--
    GO:0005634 nucleus TAS8808289
    GO:0005654 nucleoplasm EXP10436018 11095689 11125146 11931757 12045100 15226314 15684404 15707391
    About this table

    Antibodies for ORC2L: 
    Browse Antibodies Central at Invitrogen
    Millipore Mono- and Polyclonal Antibodies for the study of ORC2L
    Sigma-Aldrich Antibodies for ORC2L
    Browse R&D Systems for Antibodies
    Cell Signaling Technology (CST) Antibodies for ORC2L  (ORC2)
    Antibodies from Abcam (ORC2), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (ORC2L)
    Novus Biologicals Antibodies for ORC2L

    Assays for ORC2L: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR007220 ORC2


       GeneDecks  ORC2L for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q13416

    ProtoNet protein and cluster: Q13416

    1 Blocks protein family: IPB007220 Origin recognition complex subunit 2

    UniProtKB/Swiss-Prot: ORC2_HUMAN, Q13416
    Similarity: Belongs to the ORC2 family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (ORC2L)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (ORC2L)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006190

                  Applied Biosystems Silencer® siRNAs for ORC2L

                  Sigma-Aldrich siRNA for ORC2L  
                         Sigma-Aldrich shRNA for ORC2L  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_006190
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_006190
                                     untagged cDNA clone in CMV expression vector: NM_006190 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_006190

    UniProtKB/Swiss-Prot: ORC2_HUMAN, Q13416
    Function: Component of the origin recognition complex (ORC) that binds origins of replication. It
    has a role in both chromosomal replication and mating type transcriptional silencing. Binds to the
    ARS consensus sequence (ACS) of origins of replication in an ATP-dependent manner

    Genatlas biochemistry entry for ORC2L:
    homolog yeast origin of replication recognition complex,subunit ORC2-like,regulator of the
    initiation of DNA replication and transcription

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003688 DNA replication origin binding TAS8808289
    GO:0005515 protein binding IPI11095689
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


    2 Millipore Pathways for ORC2L
     Meiosis
     Cell cycle Start of DNA replication in early S phase

       GeneDecks  ORC2L for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for ORC2L):
     hsa04110 Cell cycle

       GeneDecks  ORC2L for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  ORC2L 


    5/62 Interacting proteins for ORC2L (ENSP000002342963 Q134161, 2) via UniProtKB, MINT, and/or STRING (see all 62 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CDC5LQ994591STRING (score=.998) EBI-374957, EBI-374880
    MCM10Q7L5901STRING (score=.999) EBI-374957, EBI-374912
    MCM2P497361STRING (score=.999) EBI-374957, EBI-374819
    MCM3P252051STRING (score=.999) EBI-374957, EBI-355153
    ORC1LQ134151STRING (score=.999) EBI-374957, EBI-374847
    About this table

    3 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122 negative regulation of transcription from RNA polymerase II promoter TAS8808289
    GO:0006260 DNA replication IEA--
    GO:0006270 DNA replication initiation TAS8808289
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for ORC2L
    1 Novoseek chemical compound relationship for ORC2L gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    lysine 20.66 1 12807890 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (ORC2L)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (ORC2L)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006190

                  Sigma-Aldrich siRNA for ORC2L  
                         Sigma-Aldrich shRNA for ORC2L  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_006190  

    REFSEQ mRNAs for ORC2L gene: 

    NM_006190.3   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_006190  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_006190
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_006190
                                     untagged cDNA clone in CMV expression vector: NM_006190 

    Additional cDNA sequence: 

    AK302614.1 AK316433.1 BC014834.1 CR596826.1 U27459.1 U40268.2 

    13 DOTS entries:

    DT.311834  DT.100730274  DT.100780158  DT.311835  DT.91819810  DT.95225732  DT.100780159  DT.120963437 
    DT.306161  DT.40122280  DT.75122760  DT.95269944  DT.120963364 

    24/125 AceView cDNA sequences (see all 125 ):

    BQ003777 AU130158 AI814392 BU685377 BM834055 BU182508 BC014834 AW085682 
    AI890085 U40268 AW472983 NM_006190 AW473208 AW004830 BF445652 BQ775398 
    BM470184 AI805763 CR596826 CF552296 BP353154 BP367458 BM750483 CB136785 

    highest scoring ESTs for ORC2L:

    U27459 AL602737 AU130158 AW672939 BC014834 BG702866 BG719044 BI561185 BM470184 BM560290 

    Unigene Cluster for ORC2L:

    Origin recognition complex, subunit 2-like (yeast)
    Hs.444870  [show with all ESTs]
    Unigene Representative Sequence: NM_006190


    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for ORC2L

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19a · 19b
    SP1:                                      -                                                                       -                     
    SP2:                                                                                                                                    
    SP3:                    -                 -                                                                                             
    SP4:                                                                                                                                    

    About this scheme

    ECgene alternative splicing isoforms for ORC2L

    2 Ensembl transcripts including schematic representations:
    ENST00000234296  ENST00000410039  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    ORC2L expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for ORC2L

    1 / 2 / 3

    4 probe-sets matching ORC2L gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    39943_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 U27459 1.00 1.00 1.00 1

    204853_at2, 3 U133-A 1 1.00 1.00 -- -- NM_006190 0.60 1.00 0.82 1

    204853_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

    1562579_at*2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  ORC2L for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.444870

    Expression variation in blood from EXPOLDB for ORC2L

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for ORC2L gene from 5/18 species (see all 18 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    ORC2L1   -- origin recognition complex, subunit 2-like (yeast) 91.9(n)
    91.84(a)
    478868  XM_536028.2  XP_536028.1 
    chimpanzee
    (Pan troglodytes)
    ORC2L1   -- origin recognition complex, subunit 2-like (yeast) 99.51(n)
    99.08(a)
    459868  XM_516023.2  XP_516023.2 
    cow
    (Bos taurus)
    ORC2L1   -- origin recognition complex, subunit 2-like (yeast) 91.13(n)
    89.84(a)
    511281  XM_588587.3  XP_588587.3 
    rat
    (Rattus norvegicus)
    Orc2l1   -- origin recognition complex, subunit 2-like (yeast) 83.8(n)
    79.09(a)
    301430  NM_001012003.1  NP_001012003.1 
    mouse
    (Mus musculus)
    Orc2l1, 5 15
    origin recognition complex, subunit 2-like (S. cerevisiae)1, 5 84.55(n)1
    78.99(a)1
    183931  NM_008765.21  NP_032791.11 
     AB1902565  AI4476925  (see all 21)
    About this table        Species with no ortholog for ORC2L

    ENSEMBL Gene Tree for ORC2L
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

      --
    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/267 NCBI SNPs in ORC2L are shown (see all 267 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 56)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 2 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs8743581,2
    A,C,F,H,O201537847(-) CAGGGG/CTTTCA 1 -- ng319Minor allele frequency- C:0.20MN EU EA WA NA NS 910
    rs30873571,2
    C,F,H,O201536610(-) CCTCCG/CGTGCT 1 -- ut51 ese36Minor allele frequency- C:0.19NA NS EU EA WA 772
    rs168363991,2
    C,F,H201538045(-) ACTCTA/GTATCT 1 -- ng318Minor allele frequency- G:0.02NA NS EU EA WA 716
    rs168363771,2
    C,F,H201537781(-) TTAGCT/GACTCC 1 -- ng3111Minor allele frequency- G:0.01NS EU EA WA 1250
    rs23073611,2
    C,F,H201522533(-) AAAGAT/AGGCTA 1 K/M mis16Minor allele frequency- A:0.00NA NS EU EA WA 770
    --
    rs168363671,2
    C,F201537432(-) CTAGCC/TGTCCG 1 -- ng317Minor allele frequency- T:0.04NS 826
    --
    rs168355221,2
    C,F201483889(-) TGTTTG/TTTCCA 1 -- ut31 ese37Minor allele frequency- T:0.01NS 842
    --
    rs168364051,2
    C,F201538071(-) TTCCTA/GAACAG 1 -- ng3110Minor allele frequency- G:0.02NA NS 746
    --
    rs168356241,2
    H201486348(-) GTGTCG/AGGAGG 1 Q/R mis15Minor allele frequency- A:0.00NS EU EA WA 572
    --
    rs168355181,2
    F201482938(-) GCCTGG/AGCAAC 1 -- ng511Minor allele frequency- A:0.04NS 168
    About this table

    HapMap Linkage Disequilibrium images for ORC2L (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 601182

    1 Novoseek disease relationship for ORC2L gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    cancer 0.00 2 11509178 (1)
    About this table

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/56 PubMed articles for ORC2L gene (see all 56 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 4999 HGNC: 8488 AceView: ORC2L Ensembl:ENSG00000115942 euGenes: HUgn4999
    ECgene: ORC2L H-InvDB: ORC2L
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    NIEHS-SNPshttp://egp.gs.washington.edu/data/orc2l/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for ORC2L:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



      Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
      Invitrogen Antibodies  Invitrogen Assays
      Invitrogen Clones  Invitrogen Q-PCR Products
      Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
      Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for ORC2L-related products

     Millipore Custom Antibody & Bulk Services
     Millipore Preclinical / Clinical Development Services
     Millipore Immunoassay Services
     Millipore Target Screening & Profiling Services


     Predesigned and custom siRNAs for ORC2L Antibodies for ORC2L
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for ORC2L Browse small molecules at Sigma-Aldrich
     "Your Favorite Gene" Pathwaysfeedback


      
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     Recombinant & Natural Proteins  

     Recombinant Proteins (ORC2L)
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     Custom Service for Mouse Mab
     Custom Service for Rabbit Pab from Full-length Protein
      
     Antibodies & Assays for ORC2L  (ORC2)

     Recombinant Proteins
    (ORC2)
     Antibodies (ORC2)
     Tagged/untagged cDNA clones
     Validated SYBR primer pairs
     Purified proteins from HEK293T cells
     Western blot validated antibodies
     shRNA in GFP-retroviral vector
     Search Tocris compounds for ORC2L




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for ORC2L

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