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Aliases for OR9Q1 Gene

Aliases for OR9Q1 Gene

  • Olfactory Receptor Family 9 Subfamily Q Member 1 2 3 5
  • Olfactory Receptor, Family 9, Subfamily Q, Member 1 2

External Ids for OR9Q1 Gene

Previous GeneCards Identifiers for OR9Q1 Gene

  • GC11U990323
  • GC11P057723
  • GC11P057703
  • GC11P057547
  • GC11P057791

Summaries for OR9Q1 Gene

Entrez Gene Summary for OR9Q1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR9Q1 Gene

OR9Q1 (Olfactory Receptor Family 9 Subfamily Q Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR9Q2.

UniProtKB/Swiss-Prot for OR9Q1 Gene

  • Odorant receptor.

Gene Wiki entry for OR9Q1 Gene

Additional gene information for OR9Q1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR9Q1 Gene

Genomics for OR9Q1 Gene

Regulatory Elements for OR9Q1 Gene

Enhancers for OR9Q1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H057978 0.8 ENCODE 11.3 -44.4 -44404 1 SOX13 DRAP1 FOXA2 ZNF792 SAP130 CEBPG RAD21 ZNF644 RARA TEAD3 OR9Q1 RNU6-899P MED19 CTNND1 GC11M057954 CYCSP26
GH11H058164 0.9 ENCODE 9.9 +141.4 141438 1 ELF3 FOXA2 ATF1 MLX RAD21 RARA CREM MIXL1 THAP11 HMG20B OR9Q2 OR1S2 OR10W1 RNU6-899P OR9Q1 MED19 TIMM10 OR5BL1P OR9I2P
GH11H057974 0.4 ENCODE 10.1 -48.5 -48490 1 HLF MED19 OR9Q1 RNU6-899P YPEL4 CLP1 APLNR GC11M057954 CYCSP26
GH11H057868 0.4 ENCODE 9.4 -155.0 -155028 0 MAX POU5F1 MED19 YPEL4 OR9Q1 RNU6-899P ENSG00000255266 GC11P057856
GH11H057819 0.4 ENCODE 8.5 -204.3 -204331 0 POLR2A BTBD18 CTNND1 ENSG00000254732 SELENOH OR9Q1 RNU6-899P PIR53177 GC11P057856
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR9Q1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR9Q1 Gene

Chromosome:
11
Start:
58,023,881 bp from pter
End:
58,181,616 bp from pter
Size:
157,736 bases
Orientation:
Plus strand

Genomic View for OR9Q1 Gene

Genes around OR9Q1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR9Q1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR9Q1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR9Q1 Gene

Proteins for OR9Q1 Gene

  • Protein details for OR9Q1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGQ5-OR9Q1_HUMAN
    Recommended name:
    Olfactory receptor 9Q1
    Protein Accession:
    Q8NGQ5
    Secondary Accessions:
    • Q2TAN3
    • Q96RA7

    Protein attributes for OR9Q1 Gene

    Size:
    310 amino acids
    Molecular mass:
    34757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR9Q1 Gene

Post-translational modifications for OR9Q1 Gene

  • Glycosylation at posLast=55
  • Modification sites at PhosphoSitePlus

Other Protein References for OR9Q1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR9Q1 Gene

Domains & Families for OR9Q1 Gene

Gene Families for OR9Q1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Plasma proteins
  • Predicted membrane proteins

Protein Domains for OR9Q1 Gene

Suggested Antigen Peptide Sequences for OR9Q1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGQ5

UniProtKB/Swiss-Prot:

OR9Q1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR9Q1: view

Function for OR9Q1 Gene

Molecular function for OR9Q1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes From GWAS Catalog for OR9Q1 Gene

Gene Ontology (GO) - Molecular Function for OR9Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR9Q1: view
genes like me logo Genes that share phenotypes with OR9Q1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for OR9Q1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for OR9Q1 Gene

Localization for OR9Q1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR9Q1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR9Q1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR9Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR9Q1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR9Q1 Gene

Pathways & Interactions for OR9Q1 Gene

genes like me logo Genes that share pathways with OR9Q1: view

Pathways by source for OR9Q1 Gene

Interacting Proteins for OR9Q1 Gene

Gene Ontology (GO) - Biological Process for OR9Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR9Q1: view

No data available for SIGNOR curated interactions for OR9Q1 Gene

Drugs & Compounds for OR9Q1 Gene

No Compound Related Data Available

Transcripts for OR9Q1 Gene

mRNA/cDNA for OR9Q1 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for OR9Q1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for OR9Q1 Gene

No ASD Table

Relevant External Links for OR9Q1 Gene

GeneLoc Exon Structure for
OR9Q1
ECgene alternative splicing isoforms for
OR9Q1

Expression for OR9Q1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR9Q1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR9Q1 Gene:

OR9Q1

SOURCE GeneReport for Unigene cluster for OR9Q1 Gene:

Hs.689841

Evidence on tissue expression from TISSUES for OR9Q1 Gene

  • Lung(4)
genes like me logo Genes that share expression patterns with OR9Q1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR9Q1 Gene

Orthologs for OR9Q1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR9Q1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466595 33
  • 97.74 (n)
OR9Q1 34
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Or9q1 52 Olfr1500 33 16 34
  • 84.09 (n)
Or9d1-ps 52 Olfr1492-ps1
  • chr19:13,718,040-13,718,899
dog
(Canis familiaris)
Mammalia OR9Q2 33
  • 82.52 (n)
-- 34
  • 77 (a)
OneToMany
-- 34
  • 75 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Olr379 33
  • 81.34 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 62 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 55 (a)
ManyToMany
Species where no ortholog for OR9Q1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR9Q1 Gene

ENSEMBL:
Gene Tree for OR9Q1 (if available)
TreeFam:
Gene Tree for OR9Q1 (if available)

Paralogs for OR9Q1 Gene

Paralogs for OR9Q1 Gene

(443) SIMAP similar genes for OR9Q1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR9Q1: view

Variants for OR9Q1 Gene

Sequence variations from dbSNP and Humsavar for OR9Q1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs386352342 Uncertain significance 58,119,227(-) CTGTT(A/G)CACCT intron-variant, reference, missense
rs1000016054 -- 58,175,558(+) TACTA(C/T)TCCCA intron-variant
rs1000017314 -- 58,094,573(+) CTTTG(A/G)ATTGA intron-variant
rs1000030625 -- 58,130,694(+) GTACA(C/T)GCCTG intron-variant
rs1000038205 -- 58,034,075(+) CTTGC(C/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OR9Q1 Gene

Variant ID Type Subtype PubMed ID
esv1014341 CNV deletion 17803354
esv1637993 CNV insertion 17803354
esv2421902 CNV deletion 20811451
esv2667278 CNV deletion 23128226
esv2761678 CNV loss 21179565
esv27790 CNV loss 19812545
esv3364981 CNV duplication 20981092
esv3431859 CNV insertion 20981092
esv3447126 CNV insertion 20981092
esv3626514 CNV loss 21293372
nsv38691 CNV insertion 16902084
nsv442232 CNV loss 18776908
nsv523101 CNV gain 19592680
nsv832165 CNV gain 17160897
nsv832166 CNV gain+loss 17160897
nsv832167 CNV gain+loss 17160897

Variation tolerance for OR9Q1 Gene

Residual Variation Intolerance Score: 82.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.96; 49.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR9Q1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR9Q1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR9Q1 Gene

Disorders for OR9Q1 Gene

Relevant External Links for OR9Q1

Genetic Association Database (GAD)
OR9Q1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR9Q1

No disorders were found for OR9Q1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR9Q1 Gene

Publications for OR9Q1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 60
  3. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 45 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for OR9Q1 Gene

Sources for OR9Q1 Gene

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