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Aliases for OR9Q1 Gene

Aliases for OR9Q1 Gene

  • Olfactory Receptor Family 9 Subfamily Q Member 1 2 3 5
  • Olfactory Receptor, Family 9, Subfamily Q, Member 1 2

External Ids for OR9Q1 Gene

Previous GeneCards Identifiers for OR9Q1 Gene

  • GC11U990323
  • GC11P057723
  • GC11P057703
  • GC11P057547
  • GC11P057791

Summaries for OR9Q1 Gene

Entrez Gene Summary for OR9Q1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR9Q1 Gene

OR9Q1 (Olfactory Receptor Family 9 Subfamily Q Member 1) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR9Q2.

UniProtKB/Swiss-Prot for OR9Q1 Gene

  • Odorant receptor.

Gene Wiki entry for OR9Q1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR9Q1 Gene

Genomics for OR9Q1 Gene

Regulatory Elements for OR9Q1 Gene

Enhancers for OR9Q1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around OR9Q1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR9Q1 Gene

Chromosome:
11
Start:
58,023,881 bp from pter
End:
58,181,616 bp from pter
Size:
157,736 bases
Orientation:
Plus strand

Genomic View for OR9Q1 Gene

Genes around OR9Q1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR9Q1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR9Q1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR9Q1 Gene

Proteins for OR9Q1 Gene

  • Protein details for OR9Q1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGQ5-OR9Q1_HUMAN
    Recommended name:
    Olfactory receptor 9Q1
    Protein Accession:
    Q8NGQ5
    Secondary Accessions:
    • Q2TAN3
    • Q96RA7

    Protein attributes for OR9Q1 Gene

    Size:
    310 amino acids
    Molecular mass:
    34757 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR9Q1 Gene

Proteomics data for OR9Q1 Gene at MOPED

Post-translational modifications for OR9Q1 Gene

  • Glycosylation at Asn 5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR9Q1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR9Q1 Gene

Domains & Families for OR9Q1 Gene

Gene Families for OR9Q1 Gene

Protein Domains for OR9Q1 Gene

Suggested Antigen Peptide Sequences for OR9Q1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGQ5

UniProtKB/Swiss-Prot:

OR9Q1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR9Q1: view

Function for OR9Q1 Gene

Molecular function for OR9Q1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR9Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR9Q1: view
genes like me logo Genes that share phenotypes with OR9Q1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for OR9Q1 Gene

Localization for OR9Q1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR9Q1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR9Q1 Gene COMPARTMENTS Subcellular localization image for OR9Q1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR9Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR9Q1: view

Pathways & Interactions for OR9Q1 Gene

genes like me logo Genes that share pathways with OR9Q1: view

Pathways by source for OR9Q1 Gene

Interacting Proteins for OR9Q1 Gene

Gene Ontology (GO) - Biological Process for OR9Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR9Q1: view

No data available for SIGNOR curated interactions for OR9Q1 Gene

Drugs & Compounds for OR9Q1 Gene

No Compound Related Data Available

Transcripts for OR9Q1 Gene

mRNA/cDNA for OR9Q1 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR9Q1 Gene

No ASD Table

Relevant External Links for OR9Q1 Gene

GeneLoc Exon Structure for
OR9Q1
ECgene alternative splicing isoforms for
OR9Q1

Expression for OR9Q1 Gene

mRNA expression in normal human tissues for OR9Q1 Gene

SOURCE GeneReport for Unigene cluster for OR9Q1 Gene Hs.689841

genes like me logo Genes that share expression patterns with OR9Q1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for OR9Q1 Gene

Orthologs for OR9Q1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR9Q1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia OR9Q2 35
  • 82.52 (n)
  • 77.35 (a)
-- 36
  • 75 (a)
OneToMany
-- 36
  • 77 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Olfr1500 35
  • 84.09 (n)
  • 82.79 (a)
Olfr1500 16
Olfr1500 36
  • 82 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC466595 35
  • 97.74 (n)
  • 95.81 (a)
OR9Q1 36
  • 96 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Olr379 35
  • 81.34 (n)
  • 81.88 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 55 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 62 (a)
OneToMany
Species with no ortholog for OR9Q1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR9Q1 Gene

ENSEMBL:
Gene Tree for OR9Q1 (if available)
TreeFam:
Gene Tree for OR9Q1 (if available)

Paralogs for OR9Q1 Gene

Paralogs for OR9Q1 Gene

(443) SIMAP similar genes for OR9Q1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR9Q1: view

Variants for OR9Q1 Gene

Sequence variations from dbSNP and Humsavar for OR9Q1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs12420738 - 58,179,920(+) GGTGC(A/G/T)GACAG reference, missense
rs716945 -- 58,115,001(-) AGTAC(A/G)GACAG intron-variant
rs737701 -- 58,153,902(+) AGGCT(G/T)TCTCT intron-variant
rs895659 -- 58,111,165(-) ACACT(A/C)ATCAG intron-variant
rs895660 -- 58,111,015(-) ATCAG(C/T)AGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OR9Q1 Gene

Variant ID Type Subtype PubMed ID
nsv897589 CNV Gain 21882294
nsv832165 CNV Gain 17160897
esv1014341 CNV Deletion 17803354
nsv38691 CNV Insertion 16902084
nsv523101 CNV Gain 19592680
esv2667278 CNV Deletion 23128226
esv27790 CNV Loss 19812545
esv2421902 CNV Deletion 20811451
nsv442232 CNV CNV 18776908
nsv832166 CNV Gain+Loss 17160897
esv1637993 CNV Insertion 17803354
nsv832167 CNV Gain+Loss 17160897

Variation tolerance for OR9Q1 Gene

Residual Variation Intolerance Score: 82.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.96; 49.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR9Q1 Gene

HapMap Linkage Disequilibrium report
OR9Q1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR9Q1 Gene

Disorders for OR9Q1 Gene

Relevant External Links for OR9Q1

Genetic Association Database (GAD)
OR9Q1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR9Q1

No disorders were found for OR9Q1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR9Q1 Gene

Publications for OR9Q1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR9Q1 Gene

Sources for OR9Q1 Gene

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