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OR9A4 Gene

protein-coding   GIFtS: 42
GCID: GC07P141622

Olfactory Receptor, Family 9, Subfamily A, Member 4

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Olfactory Receptor, Family 9, Subfamily A, Member 41 2
Olfactory Receptor OR7-12 3
Olfactory Receptor 9A42

External Ids:    HGNC: 150951   Entrez Gene: 1300752   Ensembl: ENSG000002580837   UniProtKB: Q8NGU23   

Export aliases for OR9A4 gene to outside databases

Previous GC identifers: GC07U990309 GC07P141026 GC07P141071 GC07P141265 GC07P141619


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for OR9A4 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR9A4 Gene:
OR9A4 (olfactory receptor, family 9, subfamily A, member 4) is a protein-coding gene. Diseases associated with OR9A4 include neuronitis. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR6S1.

UniProtKB/Swiss-Prot: OR9A4_HUMAN, Q8NGU2
Function: Odorant receptor (Potential)

Gene Wiki entry for OR9A4 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the OR9A4 gene promoter:
         AML1a   LCR-F1   MEF-2A   S8   HSF2   FOXJ2 (long isoform)   PPAR-gamma2   FOXJ2   aMEF-2   En-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOR9A4 promoter sequence
   Search Chromatin IP Primers for OR9A4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR9A4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 7q34   Ensembl cytogenetic band:  7q34   HGNC cytogenetic band: 7q34

OR9A4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR9A4 gene location

GeneLoc information about chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P141622:  view genomic region     (about GC identifiers)

Start:
141,618,676 bp from pter      End:
141,619,617 bp from pter
Size:
942 bases      Orientation:
plus strand

2 alternative locations:
Chr7+,NW_003571040 60,827-61,771      Chr7+,CRA_TCAG 140,956,885-140,957,829     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: OR9A4_HUMAN, Q8NGU2 (See protein sequence)
Recommended Name: Olfactory receptor 9A4  
Size: 314 amino acids; 35758 Da
Secondary accessions: B9EGV6 Q6IFI4

Explore the universe of human proteins at neXtProt for OR9A4: NX_Q8NGU2

Explore proteomics data for OR9A4 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn4, Asn190
  • Modification sites at PhosphoSitePlus
  • HORDE protein sequence for OR9A4

    See OR9A4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001001656.1  
    ENSEMBL proteins: 
     ENSP00000448789  
    Reactome Protein details: Q8NGU2

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    OR9: GPCR / Class A : Olfactory receptors

    3 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000725 Olfact_rcpt
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q8NGU2

    ProtoNet protein and cluster: Q8NGU2

    1 Blocks protein domain: IPB000725 Olfactory receptor signature

    UniProtKB/Swiss-Prot: OR9A4_HUMAN, Q8NGU2
    Similarity: Belongs to the G-protein coupled receptor 1 family


    OR9A4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: OR9A4_HUMAN, Q8NGU2
    Function: Odorant receptor (Potential)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
    GO:0004984olfactory receptor activity IEA--
         
    OR9A4 for ontologies           About GeneDecksing


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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    OR9A4_HUMAN, Q8NGU2: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral component of membrane IEA--

    OR9A4 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for OR9A4 About    
    See pathways by source

    SuperPathContained pathways About
    1Olfactory Signaling Pathway
    Olfactory Signaling Pathway0.82
    Olfactory transduction0.82
    2Signaling by GPCR
    Signaling by GPCR0.90
    Signal Transduction0.58
    GPCR downstream signaling0.90

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for OR9A4
        Olfactory Signaling Pathway


    1 Kegg Pathway  (Kegg details for OR9A4):
        Olfactory transduction


    OR9A4 for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OR9A4
    Interactions:

        Search GeneGlobe Interaction Network for OR9A4

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway ----

    OR9A4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OR9A4



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for OR9A4 gene: 
    NM_001001656.1  

    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000548136(uc003vwu.1)
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      QuantiFast Probe-based Assays in human, mouse, rat OR9A4

    1 AceView cDNA sequence:

    NM_001001656 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OR9A4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TTTCAGCTTA
    OR9A4 Expression
    About this image

    OR9A4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OR9A4 Protein Expression
        Custom PCR Arrays for OR9A4
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for OR9A4 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Olfr4601 , 5 olfactory receptor 4601, 5 84.39(n)1
    84.39(a)1
      6 (18.82 cM)5
    2583811  NM_146383.11  NP_666495.11 
     405713575 
    zebrafish
    (Danio rerio)
    Actinopterygii or101-16
    odorant receptor, family B, subfamily 101, member ...
    35(a)
    1 → many
    21(39151877-39153417) ENSDARG00000013014


    ENSEMBL Gene Tree for OR9A4 (if available)
    TreeFam Gene Tree for OR9A4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for OR9A4 gene
    OR6S12  OR6T12  OR6X12  OR6M12  OR6F12  OR6V12  OR6J12  OR9A22  
    Selected SIMAP similar genes for OR9A4 using alignment to 1 protein entry:     OR9A4_HUMAN(see all similar genes):
    OR9A2    OR9A1P    OR6M1    OR6C74    OR6S1    OR6C1
    OR6C4    OR6T1    OR6V1    OR10R3P    OR2K2    OR6C2
    OR6C3    OR6C65    OR6C70    OR6C75    OR6C76    OR8U1

    OR9A4 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for OR9A4
    PGOHUM00000233601 PGOHUM00000261636


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for OR9A4 (see all 101)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 7 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1419591011,2
    C--135913127(+) GAAGGA/CGAGAG 1 -- us2k10--------
    rs12859151,2
    C,F--135913138(+) ATAGAG/TACAGT 1 -- us2k14Minor allele frequency- T:0.19NA 126
    rs1845145351,2
    C--135913165(+) CACTCA/GTATTT 1 -- us2k10--------
    rs117645291,2
    C,F,H--135913254(+) CTGAGC/TATAGC 1 -- us2k12Minor allele frequency- T:0.25NA 4
    rs1179277471,2
    F--135913338(+) TCTCCG/TGAGGT 1 -- us2k11Minor allele frequency- T:0.01EA 120
    rs1889893861,2
    --135913339(+) CTCCGG/TAGGTG 1 -- us2k10--------
    rs1121199951,2
    C,F--135913350(+) AGTGTG/CTTCCA 1 -- us2k11Minor allele frequency- C:0.50CSA 2
    rs1808885511,2
    --135913361(+) GAGGGA/GGTTCC 1 -- us2k10--------
    rs786677451,2
    C,F--135913362(+) AGGGGG/TTTCCT 1 -- us2k11Minor allele frequency- T:0.03NA 120
    rs1419155591,2
    C--135913402(+) ATGATA/GGGAGG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for OR9A4 ( 141618676 - 141619617 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for OR9A4:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv5974CNV Loss18451855
    nsv831161CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for OR9A4:    
    About MalaCards
    neuronitis


    OR9A4 for disorders           About GeneDecksing


    Export disorders for OR9A4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OR9A4 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OR9A4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    2. Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)1, 2 Scherer S.W.... Tsui L.-C. (Science 2003)
    3. Genetic variants associated with disordered eating. (PubMed id 23568457)1 Wade T.D....Martin N.G. (Int J Eat Disord 2013)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    6. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 130075 HGNC: 15095 AceView: OR9A4 Ensembl:ENSG00000258083 euGenes: HUgn130075
    ECgene: OR9A4 Kegg: 130075 H-InvDB: OR9A4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OR9A4 Pharmacogenomics, SNPs, Pathways
    HORDE entry for OR9A4 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OR9A4 gene:
    Search GeneIP for patents involving OR9A4

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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