OR8D1 Gene
protein-coding GIFtS: 47
GCID: GC11M124179
|
|
olfactory receptor, family 8, subfamily D, member 1
(Previous symbol: OR8D3)
| |
Aliases
for OR8D1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Olfactory Receptor, Family 8, Subfamily D, Member 11 2 | | JCG92 | | OR8D31 2 3 | | PDJ9J142 | | OST0041 2 3 | | Olfactory Receptor 8D12 | | Olfactory Receptor 8D32 3 | | Olfactory Receptor, Family 8, Subfamily D, Member 32 | | Olfactory Receptor OR11-3012 3 | | Olfactory-Like Receptor JCG92 | | Olfactory Receptor-Like Protein JCG92 3 | | |
Export aliases for OR8D1 gene to outside databasesPrevious GC identifers: GC11U990224 GC11M123718 GC11M123684 |
Summaries
for OR8D1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for OR8D1:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers theperception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors(GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with manyneurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction ofodorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to theolfactory receptor genes and proteins for this organism is independent of other organisms. (provided by RefSeq, Jul2008)
UniProtKB/Swiss-Prot: OR8D1_HUMAN, Q8WZ84Function: Odorant receptor (Potential). May be involved in taste perception
Gene Wiki entry for OR8D1
|
Genomic Views
for OR8D1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_033899.8
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the OR8D1 gene promoter:
AREB6 POU3F2 (N-Oct-5a) POU3F2 (N-Oct-5b) Meis-1a POU3F2 Meis-1 Meis-1b
Other transcription factors
Search SABiosciences Chromatin IP Primers for OR8D1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR8D1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11q24.2 Ensembl cytogenetic band: 11q24.2 HGNC cytogenetic band: 11q25OR8D1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M124179: view genomic region
(about GC identifiers)
Start:
|
124,179,739 bp from pter |
End:
|
124,180,662 bp from pter |
Size:
|
924 bases |
Orientation:
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minus strand |
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Proteins
for OR8D1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: OR8D1_HUMAN, Q8WZ84 (See
protein sequence)Recommended Name: Olfactory receptor 8D1 Size: 308 amino acids; 34445 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: B2RNL4 Q6IEW1 Q8NGH0Explore the universe of human proteins at neXtProt for OR8D1: NX_Q8WZ84
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8WZ84
HORDE protein sequence for OR8D1
OR8D1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001002917.1
ENSEMBL proteins: ENSP00000350474 Reactome Protein details: Q8WZ84
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
TAS | -- | | GO:0016021 | integral to membrane |
IEA | -- |
OR8D1 for ontologies About GeneDecksing
OR8D1 Antibody Products:
Assay Products for OR8D1: |
Protein
Domains /
Families
for OR8D1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
OR8D1 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8WZ84ProtoNet protein and cluster: Q8WZ84 1 Blocks protein family: IPB000725 Olfactory receptor signature
UniProtKB/Swiss-Prot: OR8D1_HUMAN, Q8WZ84Similarity: Belongs to the G-protein coupled receptor 1 family |
Function
for OR8D1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: OR8D1_HUMAN, Q8WZ84Function: Odorant receptor (Potential). May be involved in taste perception
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR8D1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR8D1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: OR8D1 (NM_001002917) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OR8D1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR8D1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR8D1 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0004984 | olfactory receptor activity |
IEA | -- |
OR8D1 for ontologies About GeneDecksing
|
Pathways & Interactions
for OR8D1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Signaling by GPCR | | | 2 | Olfactory transduction | |
Pathway sources
See GeneCards unified pathways
Show all pathways
4 
Reactome Pathways for OR8D1
1 
Kegg Pathway (Kegg details for OR8D1):
OR8D1 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OR8D1
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/273 Interacting proteins for OR8D1 (ENSP000003504744) via UniProtKB, MINT, STRING, and/or I2D (see all 273)About this table
|
Drugs & Compounds
for OR8D1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for OR8D1
Search CenterWatch for drugs/clinical trials and news about OR8D1
|
Transcripts
for OR8D1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for OR8D1 gene: NM_001002917.1 Unigene Cluster for OR8D1: Olfactory receptor, family 8, subfamily D, member 1 Hs.504211 Unigene Representative Sequence: BC1369501 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000357821(uc010sag.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR8D1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR8D1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: OR8D1 (NM_001002917) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OR8D1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR8D1 |
Additional cDNA sequence: AF238489.1 BC136950.1 BC136954.1 1 DOTS entry: DT.95099986 2 AceView cDNA sequences: AF238489 NM_001002917
GeneLoc Exon Structure
|
Expression
for OR8D1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| OR8D1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See OR8D1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for OR8D1
SOURCE GeneReport for Unigene cluster: Hs.504211
UniProtKB/Swiss-Prot: OR8D1_HUMAN, Q8WZ84Tissue specificity: Expressed in the tongue
SABiosciences Custom PCR Arrays for OR8D1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for OR8D1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat OR8D1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR8D1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR8D1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR8D1 |
Orthologs
for OR8D1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for OR8D1 gene from 1/7 species (see all 7) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
-- |
-- |
44(a) |
possible ortholog |
Un(36276372-36277319) |
ENSEMBL Gene Tree for OR8D1 (if available)
TreeFam Gene Tree for OR8D1 (if available) |
Paralogs
for OR8D1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for OR8D1 gene
- OR8B82 OR8A12 OR8B42 OR8D22 OR8B122 OR8D42 OR8B22 OR8B32
18/454 SIMAP similar genes for OR8D1 using alignment to 1 protein entry: OR8D1_HUMAN(see all similar genes):OR8B3 OR8D2 OR8G2 OR8B12 OR8B2 OR8B8
OR8G1 OR8D4 OR8G5 OR5B12 OR8A1 OR5B2
OR5B3 OR8B4 OR5AR1 OR8U1 OR8U8 OR8U9
OR8D1 for paralogs About GeneDecksing
|
Genomic Variants
for OR8D1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for OR8D1 ( 124179739 - 124180662 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for OR8D1: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing OR8D1 |
|
Disorders
/ Diseases
for OR8D1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
OR8D1 for disorders About GeneDecksing
1  disease for OR8D1: About MalaCardsneuronitis
Export disorders for OR8D1 gene to outside databases
|
Publications
for OR8D1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for OR8D1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with OR8D1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (2004)
- New GPCRs from a human lingual cDNA library. (PubMed id 11705801)1, 2 Gaudin J.-C.... Haertle T. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Olfactory-like receptor cDNAs are present in human lingual cDNA libraries. (PubMed id 15950192)9 Durzynski L....Haertle T. (2005)
|
External Searches for OR8D1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing OR8D1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing OR8D1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing OR8D1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for OR8D1 | Pharmacogenomics, SNPs, Pathways | | HORDE entry for OR8D1 | The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science |
|
| | |
About This Section
| Patent Information for OR8D1 gene:
Search GeneIP for patents involving OR8D1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for OR8D1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for OR8D1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for OR8D1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for OR8D1 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for OR8D1 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR8D1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR8D1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for OR8D1 | | OriGene Custom Protein Services for OR8D1 | | | OriGene Custom Immunoassay Development | | |
| |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OR8D1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing OR8D1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR8D1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat OR8D1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR8D1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR8D1 |
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| | | | Search Tocris compounds for OR8D1 |
| |  |  |  |  | | | | |
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 |
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 | | | OR8D1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR8D1 |
|  |  |  | | | | Search ThermoFisher Antibodies for OR8D1 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR8D1 |
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