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Aliases for OR6Q1 Gene

Aliases for OR6Q1 Gene

  • Olfactory Receptor, Family 6, Subfamily Q, Member 1 (Gene/Pseudogene) 2 3
  • Olfactory Receptor OR11-226 3 4
  • Olfactory Receptor 6Q1 3
  • OR11-226 3

External Ids for OR6Q1 Gene

Summaries for OR6Q1 Gene

Entrez Gene Summary for OR6Q1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR6Q1 Gene

OR6Q1 (Olfactory Receptor, Family 6, Subfamily Q, Member 1 (Gene/Pseudogene)) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR11L1.

UniProtKB/Swiss-Prot for OR6Q1 Gene

  • Odorant receptor.

Gene Wiki entry for OR6Q1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR6Q1 Gene

Genomics for OR6Q1 Gene

Genomic Location for OR6Q1 Gene

Start:
58,030,953 bp from pter
End:
58,031,906 bp from pter
Size:
954 bases
Orientation:
Plus strand

Genomic View for OR6Q1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR6Q1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR6Q1 Gene

Regulatory Elements for OR6Q1 Gene

Transcription factor binding sites by QIAGEN in the OR6Q1 gene promoter:

Proteins for OR6Q1 Gene

  • Protein details for OR6Q1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGQ2-OR6Q1_HUMAN
    Recommended name:
    Olfactory receptor 6Q1
    Protein Accession:
    Q8NGQ2
    Secondary Accessions:
    • B9EKW1
    • Q6IFH1
    • Q96R34

    Protein attributes for OR6Q1 Gene

    Size:
    317 amino acids
    Molecular mass:
    35736 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR6Q1 Gene

Proteomics data for OR6Q1 Gene at MOPED

Post-translational modifications for OR6Q1 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn7 and Asn95

Other Protein References for OR6Q1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for OR6Q1 Gene

Domains for OR6Q1 Gene

Gene Families for OR6Q1 Gene

HGNC:
  • OR6 :GPCR / Class A : Olfactory receptors

Protein Domains for OR6Q1 Gene

UniProtKB/Swiss-Prot:

OR6Q1_HUMAN
Family:
  • Belongs to the G-protein coupled receptor 1 family.:
    • Q8NGQ2
genes like me logo Genes that share domains with OR6Q1: view

Function for OR6Q1 Gene

Molecular function for OR6Q1 Gene

UniProtKB/Swiss-Prot Function: Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR6Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IBA --
GO:0004984 olfactory receptor activity IBA --
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR6Q1: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR6Q1 Gene

Localization for OR6Q1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR6Q1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR6Q1 Gene COMPARTMENTS Subcellular localization image for OR6Q1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR6Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0005887 integral component of plasma membrane IBA --
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with OR6Q1: view

Pathways for OR6Q1 Gene

genes like me logo Genes that share pathways with OR6Q1: view

Pathways by source for OR6Q1 Gene

Interacting Proteins for OR6Q1 Gene

Gene Ontology (GO) - Biological Process for OR6Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR6Q1: view

Transcripts for OR6Q1 Gene

mRNA/cDNA for OR6Q1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR6Q1 Gene

No ASD Table

Relevant External Links for OR6Q1 Gene

GeneLoc Exon Structure for
OR6Q1
ECgene alternative splicing isoforms for
OR6Q1

Expression for OR6Q1 Gene

mRNA expression in normal human tissues for OR6Q1 Gene

SOURCE GeneReport for Unigene cluster for OR6Q1 Gene Hs.690432

genes like me logo Genes that share expressions with OR6Q1: view

Orthologs for OR6Q1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR6Q1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466592 36
  • 98.84 (n)
  • 97.48 (a)
OR6Q1 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OR6Q1 36
  • 78.23 (n)
  • 76.97 (a)
OR6Q1 37
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC483486 36
  • 87.28 (n)
  • 89.27 (a)
OR6Q1 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Olfr522 16
Olfr522 37
  • 48 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OR6Q1 37
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OR6Q1 37
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 49 (a)
OneToMany
Species with no ortholog for OR6Q1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR6Q1 Gene

ENSEMBL:
Gene Tree for OR6Q1 (if available)
TreeFam:
Gene Tree for OR6Q1 (if available)

Paralogs for OR6Q1 Gene

Paralogs for OR6Q1 Gene

Selected SIMAP similar genes for OR6Q1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with OR6Q1: view

Variants for OR6Q1 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for OR6Q1 Gene

Q8NGQ2-OR6Q1_HUMAN
A single nucleotide deletion at position Leu-229 in the gene coding for this protein is responsible for functional diversity thus producing a pseudogene. The deletion is more frequent in African-Americans than in non-Africans

Sequence variations from dbSNP and Humsavar for OR6Q1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
VAR_057561 -
VAR_064742 -

Structural Variations from Database of Genomic Variants (DGV) for OR6Q1 Gene

Variant ID Type Subtype PubMed ID
nsv897589 CNV Gain 21882294

Relevant External Links for OR6Q1 Gene

HapMap Linkage Disequilibrium report
OR6Q1

Disorders for OR6Q1 Gene

No disorders were found for OR6Q1 Gene.

No data available for UniProtKB/Swiss-Prot for OR6Q1 Gene

Publications for OR6Q1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Different noses for different people. (PMID: 12730696) Menashe I. … Gilad Y. (Nat. Genet. 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for OR6Q1 Gene

Sources for OR6Q1 Gene

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