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Aliases for OR5R1 Gene

Aliases for OR5R1 Gene

  • Olfactory Receptor Family 5 Subfamily R Member 1 (Gene/Pseudogene) 2 3 5
  • Olfactory Receptor OR11-185 3 4
  • OR5R1P 3 4
  • Olfactory Receptor, Family 5, Subfamily R, Member 1 (Gene/Pseudogene) 2
  • Olfactory Receptor, Family 5, Subfamily R, Member 1 Pseudogene 3
  • Olfactory Receptor 5R1 3
  • OR11-185 3

External Ids for OR5R1 Gene

Previous HGNC Symbols for OR5R1 Gene

  • OR5R1P

Previous GeneCards Identifiers for OR5R1 Gene

  • GC11M055961
  • GC11M055941
  • GC11M056186

Summaries for OR5R1 Gene

Entrez Gene Summary for OR5R1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. This olfactory receptor gene is a segregating pseudogene, where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele encoding a protein that is predicted to be non-functional. [provided by RefSeq, Jun 2015]

GeneCards Summary for OR5R1 Gene

OR5R1 (Olfactory Receptor Family 5 Subfamily R Member 1 (Gene/Pseudogene)) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR8U1.

UniProtKB/Swiss-Prot for OR5R1 Gene

  • Odorant receptor.

Gene Wiki entry for OR5R1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR5R1 Gene

Genomics for OR5R1 Gene

Regulatory Elements for OR5R1 Gene

Enhancers for OR5R1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G056394 0.2 ENCODE 11.7 +23.4 23353 0.2 OR5R1 OR5AL2P OR5AL1
GH11G056474 0.2 ENCODE 10.6 -56.7 -56708 0.2 OR5R1 RTN4RL2 OR5M3 OR5M2P
GH11G056895 0.3 FANTOM5 6.3 -477.6 -477584 0.0 OR5M10 OR5M9 OR5AP2 OR5M1 OR5M3 OR5AR1 OR5M8 OR5R1 OR5M11 FADS2P1
GH11G056443 0.2 ENCODE 0.3 -25.3 -25328 0.2 GC11M056444 OR5R1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR5R1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR5R1 Gene

Chromosome:
11
Start:
56,417,258 bp from pter
End:
56,418,232 bp from pter
Size:
975 bases
Orientation:
Minus strand

Genomic View for OR5R1 Gene

Genes around OR5R1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5R1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5R1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR5R1 Gene

Proteins for OR5R1 Gene

  • Protein details for OR5R1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH85-OR5R1_HUMAN
    Recommended name:
    Olfactory receptor 5R1
    Protein Accession:
    Q8NH85

    Protein attributes for OR5R1 Gene

    Size:
    324 amino acids
    Molecular mass:
    36708 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR5R1 Gene

Post-translational modifications for OR5R1 Gene

  • Glycosylation at Asn265
  • Modification sites at PhosphoSitePlus

Other Protein References for OR5R1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR5R1 Gene

Domains & Families for OR5R1 Gene

Gene Families for OR5R1 Gene

Protein Domains for OR5R1 Gene

Suggested Antigen Peptide Sequences for OR5R1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NH85

UniProtKB/Swiss-Prot:

OR5R1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR5R1: view

Function for OR5R1 Gene

Molecular function for OR5R1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR5R1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR5R1: view
genes like me logo Genes that share phenotypes with OR5R1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5R1 Gene

Localization for OR5R1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR5R1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR5R1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR5R1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR5R1: view

Pathways & Interactions for OR5R1 Gene

genes like me logo Genes that share pathways with OR5R1: view

Pathways by source for OR5R1 Gene

Interacting Proteins for OR5R1 Gene

Gene Ontology (GO) - Biological Process for OR5R1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR5R1: view

No data available for SIGNOR curated interactions for OR5R1 Gene

Drugs & Compounds for OR5R1 Gene

No Compound Related Data Available

Transcripts for OR5R1 Gene

mRNA/cDNA for OR5R1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR5R1 Gene

No ASD Table

Relevant External Links for OR5R1 Gene

GeneLoc Exon Structure for
OR5R1
ECgene alternative splicing isoforms for
OR5R1

Expression for OR5R1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR5R1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR5R1 Gene:

OR5R1

SOURCE GeneReport for Unigene cluster for OR5R1 Gene:

Hs.553630
genes like me logo Genes that share expression patterns with OR5R1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR5R1 Gene

Orthologs for OR5R1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR5R1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466563 34
  • 98.87 (n)
dog
(Canis familiaris)
Mammalia LOC100684702 34
  • 89.86 (n)
cow
(Bos Taurus)
Mammalia OR5R1 34
  • 86.62 (n)
mouse
(Mus musculus)
Mammalia Olfr1038-ps 34 16
  • 84.01 (n)
Or5r1 55 Olfr1038
  • chr2:86,121,925-86,122,797
Or5r3-ps 55 Olfr1035-ps1
  • chr2:86,056,002-86,056,964
rat
(Rattus norvegicus)
Mammalia Olr477 34
  • 83.8 (n)
Species where no ortholog for OR5R1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR5R1 Gene

ENSEMBL:
Gene Tree for OR5R1 (if available)
TreeFam:
Gene Tree for OR5R1 (if available)

Paralogs for OR5R1 Gene

Paralogs for OR5R1 Gene

(445) SIMAP similar genes for OR5R1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR5R1: view

Variants for OR5R1 Gene

Sequence variations from dbSNP and Humsavar for OR5R1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000560105 -- 56,419,666(+) ATATG(C/T)TCAAT upstream-variant-2KB
rs1001192985 -- 56,417,070(+) TGTTT(G/T)TATTT downstream-variant-500B
rs1001928995 -- 56,419,039(+) TTTGA(A/G)AGATC upstream-variant-2KB
rs1005044686 -- 56,417,079(+) TTGAA(C/T)GTGGT downstream-variant-500B
rs1007034726 -- 56,417,134(+) AATTC(A/G)TACTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for OR5R1 Gene

Variant ID Type Subtype PubMed ID
dgv1948n54 CNV loss 21841781
esv3579724 CNV loss 25503493
nsv825905 CNV loss 20364138

Variation tolerance for OR5R1 Gene

Residual Variation Intolerance Score: 98.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 19.00; 98.74% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR5R1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR5R1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR5R1 Gene

Disorders for OR5R1 Gene

Relevant External Links for OR5R1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR5R1

No disorders were found for OR5R1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR5R1 Gene

Publications for OR5R1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  2. Personal receptor repertoires: olfaction as a model. (PMID: 22908908) Olender T. … Lancet D. (BMC Genomics 2012) 3 64
  3. A probabilistic classifier for olfactory receptor pseudogenes. (PMID: 16939646) Menashe I. … Lancet D. (BMC Bioinformatics 2006) 3 64

Products for OR5R1 Gene

Sources for OR5R1 Gene

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