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Aliases for OR5J2 Gene

Aliases for OR5J2 Gene

  • Olfactory Receptor Family 5 Subfamily J Member 2 2 3 5
  • Olfactory Receptor, Family 5, Subfamily J, Member 2 2 3
  • Olfactory Receptor OR11-266 3 4
  • OR11-266 3

External Ids for OR5J2 Gene

Previous GeneCards Identifiers for OR5J2 Gene

  • GC00U903074
  • GC11U900558
  • GC11P055700
  • GC11P055944

Summaries for OR5J2 Gene

Entrez Gene Summary for OR5J2 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR5J2 Gene

OR5J2 (Olfactory Receptor Family 5 Subfamily J Member 2) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR5G3.

UniProtKB/Swiss-Prot for OR5J2 Gene

  • Odorant receptor.

Gene Wiki entry for OR5J2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR5J2 Gene

Genomics for OR5J2 Gene

Regulatory Elements for OR5J2 Gene

Genomic Location for OR5J2 Gene

Chromosome:
11
Start:
56,176,618 bp from pter
End:
56,177,556 bp from pter
Size:
939 bases
Orientation:
Plus strand

Genomic View for OR5J2 Gene

Genes around OR5J2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5J2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5J2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR5J2 Gene

Proteins for OR5J2 Gene

  • Protein details for OR5J2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH18-OR5J2_HUMAN
    Recommended name:
    Olfactory receptor 5J2
    Protein Accession:
    Q8NH18
    Secondary Accessions:
    • Q6IEU5

    Protein attributes for OR5J2 Gene

    Size:
    312 amino acids
    Molecular mass:
    34808 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR5J2 Gene

Proteomics data for OR5J2 Gene at MOPED

Post-translational modifications for OR5J2 Gene

  • Glycosylation at Asn 5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR5J2 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR5J2 Gene

Domains & Families for OR5J2 Gene

Gene Families for OR5J2 Gene

Protein Domains for OR5J2 Gene

Suggested Antigen Peptide Sequences for OR5J2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NH18

UniProtKB/Swiss-Prot:

OR5J2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR5J2: view

Function for OR5J2 Gene

Molecular function for OR5J2 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR5J2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR5J2: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5J2 Gene

Localization for OR5J2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR5J2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR5J2 Gene COMPARTMENTS Subcellular localization image for OR5J2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR5J2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR5J2: view

Pathways & Interactions for OR5J2 Gene

genes like me logo Genes that share pathways with OR5J2: view

Pathways by source for OR5J2 Gene

Interacting Proteins for OR5J2 Gene

Gene Ontology (GO) - Biological Process for OR5J2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR5J2: view

No data available for SIGNOR curated interactions for OR5J2 Gene

Drugs & Compounds for OR5J2 Gene

No Compound Related Data Available

Transcripts for OR5J2 Gene

mRNA/cDNA for OR5J2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR5J2 Gene

No ASD Table

Relevant External Links for OR5J2 Gene

GeneLoc Exon Structure for
OR5J2
ECgene alternative splicing isoforms for
OR5J2

Expression for OR5J2 Gene

mRNA expression in normal human tissues for OR5J2 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for OR5J2 Gene



SOURCE GeneReport for Unigene cluster for OR5J2 Gene Hs.537145

genes like me logo Genes that share expression patterns with OR5J2: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for OR5J2 Gene

Orthologs for OR5J2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR5J2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia OR5J2 35
  • 82.59 (n)
  • 77.56 (a)
OR5J2 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR5J2 35
  • 84.4 (n)
  • 82.69 (a)
-- 36
  • 82 (a)
OneToMany
-- 36
  • 83 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Olfr1052 35
  • 77.03 (n)
  • 78.21 (a)
Olfr1052 16
Olfr1052 36
  • 78 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC466550 35
  • 98.82 (n)
  • 96.79 (a)
OR5J2 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 67 (a)
OneToMany
-- 36
  • 68 (a)
OneToMany
-- 36
  • 69 (a)
OneToMany
-- 36
  • 70 (a)
OneToMany
-- 36
  • 71 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 65 (a)
OneToMany
-- 36
  • 59 (a)
OneToMany
chicken
(Gallus gallus)
Aves COR4 35
  • 64.38 (n)
  • 57.19 (a)
-- 36
  • 60 (a)
OneToMany
-- 36
  • 54 (a)
OneToMany
COR9 36
  • 49 (a)
OneToMany
COR9 36
  • 53 (a)
OneToMany
Species with no ortholog for OR5J2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR5J2 Gene

ENSEMBL:
Gene Tree for OR5J2 (if available)
TreeFam:
Gene Tree for OR5J2 (if available)

Paralogs for OR5J2 Gene

Paralogs for OR5J2 Gene

(442) SIMAP similar genes for OR5J2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR5J2: view

Variants for OR5J2 Gene

Sequence variations from dbSNP and Humsavar for OR5J2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs12279899 - 56,177,025(+) GCCAT(C/G)TCTGA reference, missense
rs4489763 -- 56,176,998(+) ATTGT(A/G)AGTCC reference, synonymous-codon
rs4939026 -- 56,175,135(+) TCACT(A/G)TGAAT upstream-variant-2KB
rs7934132 -- 56,174,987(+) TGCAT(A/T)TTCAC upstream-variant-2KB
rs10896103 -- 56,176,572(+) TATGA(C/G)TCTAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR5J2 Gene

Variant ID Type Subtype PubMed ID
nsv521440 CNV Loss 19592680

Variation tolerance for OR5J2 Gene

Residual Variation Intolerance Score: 82% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.46; 54.93% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR5J2 Gene

HapMap Linkage Disequilibrium report
OR5J2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR5J2 Gene

Disorders for OR5J2 Gene

Relevant External Links for OR5J2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR5J2

No disorders were found for OR5J2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR5J2 Gene

Publications for OR5J2 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 67
  2. Expression of members of the putative olfactory receptor gene family in mammalian germ cells. (PMID: 1370859) Parmentier M. … Vassart G. (Nature 1992) 3

Products for OR5J2 Gene

Sources for OR5J2 Gene

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