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Aliases for OR5H2 Gene

Aliases for OR5H2 Gene

  • Olfactory Receptor Family 5 Subfamily H Member 2 2 3 5
  • Olfactory Receptor OR3-10 3 4
  • Olfactory Receptor, Family 5, Subfamily H, Member 2 2
  • Olfactory Receptor 5H2 3
  • OR3-10 3

External Ids for OR5H2 Gene

Previous GeneCards Identifiers for OR5H2 Gene

  • GC03U990195
  • GC03P099485
  • GC03P098001

Summaries for OR5H2 Gene

Entrez Gene Summary for OR5H2 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR5H2 Gene

OR5H2 (Olfactory Receptor Family 5 Subfamily H Member 2) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR5H1.

UniProtKB/Swiss-Prot for OR5H2 Gene

  • Odorant receptor.

Gene Wiki entry for OR5H2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR5H2 Gene

Genomics for OR5H2 Gene

Regulatory Elements for OR5H2 Gene

Enhancers for OR5H2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G098341 0.3 FANTOM5 14.1 +58.4 58412 0.0 OR5H2 OR5H6 OR5K4 OR5AC2 GC03M098326
GH03G098573 1.5 FANTOM5 ENCODE dbSUPER 2.1 +290.6 290616 0.9 NFIB ZNF133 FEZF1 RAD21 YY1 ZNF366 RELB IKZF2 ZNF654 ZNF362 CPOX CLDND1 OR5H6 OR5H2 GC03M098547
GH03G098550 1.5 FANTOM5 ENCODE dbSUPER 1.9 +272.2 272174 8.2 HDGF PKNOX1 CREB3L1 WRNIP1 YY1 TCF12 GATA2 JUNB TBX21 ZNF592 CPOX GPR15 DCBLD2 ST3GAL6-AS1 OR5H6 CLDND1 OR5H2 GC03M098547
GH03G098255 0.2 ENCODE 11.9 -26.7 -26746 0.6 OR5H2 OR5H5P OR5H6 OR5H7P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR5H2 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR5H2 Gene

Chromosome:
3
Start:
98,282,888 bp from pter
End:
98,283,832 bp from pter
Size:
945 bases
Orientation:
Plus strand

Genomic View for OR5H2 Gene

Genes around OR5H2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5H2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5H2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR5H2 Gene

Proteins for OR5H2 Gene

  • Protein details for OR5H2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGV7-OR5H2_HUMAN
    Recommended name:
    Olfactory receptor 5H2
    Protein Accession:
    Q8NGV7
    Secondary Accessions:
    • Q6IF87

    Protein attributes for OR5H2 Gene

    Size:
    314 amino acids
    Molecular mass:
    35974 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR5H2 Gene

Post-translational modifications for OR5H2 Gene

Other Protein References for OR5H2 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR5H2 Gene

Domains & Families for OR5H2 Gene

Gene Families for OR5H2 Gene

Protein Domains for OR5H2 Gene

Suggested Antigen Peptide Sequences for OR5H2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGV7

UniProtKB/Swiss-Prot:

OR5H2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR5H2: view

Function for OR5H2 Gene

Molecular function for OR5H2 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR5H2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR5H2: view

Phenotypes for OR5H2 Gene

genes like me logo Genes that share phenotypes with OR5H2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5H2 Gene

Localization for OR5H2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR5H2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR5H2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR5H2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR5H2: view

Pathways & Interactions for OR5H2 Gene

genes like me logo Genes that share pathways with OR5H2: view

Pathways by source for OR5H2 Gene

Interacting Proteins for OR5H2 Gene

Gene Ontology (GO) - Biological Process for OR5H2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR5H2: view

No data available for SIGNOR curated interactions for OR5H2 Gene

Drugs & Compounds for OR5H2 Gene

No Compound Related Data Available

Transcripts for OR5H2 Gene

mRNA/cDNA for OR5H2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR5H2 Gene

No ASD Table

Relevant External Links for OR5H2 Gene

GeneLoc Exon Structure for
OR5H2
ECgene alternative splicing isoforms for
OR5H2

Expression for OR5H2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR5H2 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR5H2 Gene:

OR5H2

SOURCE GeneReport for Unigene cluster for OR5H2 Gene:

Hs.554711
genes like me logo Genes that share expression patterns with OR5H2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR5H2 Gene

Orthologs for OR5H2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR5H2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100611442 34
  • 99.15 (n)
mouse
(Mus musculus)
Mammalia Olfr196 34 16 35
  • 81.49 (n)
Or5h18 55 Olfr186 35
  • 77 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia OR5H2 34
  • 80.8 (n)
-- 35
  • 77 (a)
ManyToMany
-- 35
  • 74 (a)
ManyToMany
-- 35
  • 73 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Olr1535 34
  • 80.63 (n)
dog
(Canis familiaris)
Mammalia -- 35
  • 78 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 61 (a)
OneToMany
Species where no ortholog for OR5H2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR5H2 Gene

ENSEMBL:
Gene Tree for OR5H2 (if available)
TreeFam:
Gene Tree for OR5H2 (if available)

Paralogs for OR5H2 Gene

Paralogs for OR5H2 Gene

(442) SIMAP similar genes for OR5H2 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR5H2 Gene

genes like me logo Genes that share paralogs with OR5H2: view

Variants for OR5H2 Gene

Sequence variations from dbSNP and Humsavar for OR5H2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000550981 -- 98,282,561(+) TTGCA(G/T)GCTGT intron-variant, upstream-variant-2KB
rs1001771920 -- 98,281,251(+) GCCTG(A/G)AGATT intron-variant, upstream-variant-2KB
rs1004178811 -- 98,283,219(+) TGCAT(C/T)TGGTG intron-variant, reference, missense
rs1006038265 -- 98,283,054(+) CTGGA(A/G)TGACC intron-variant, reference, missense
rs1006950305 -- 98,283,960(+) ATACC(-/TAA)TAAAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for OR5H2 Gene

Variant ID Type Subtype PubMed ID
esv2725674 CNV deletion 23290073
nsv1000834 CNV gain 25217958
nsv1013060 CNV gain 25217958
nsv834773 CNV gain 17160897

Variation tolerance for OR5H2 Gene

Residual Variation Intolerance Score: 91.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.30; 76.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR5H2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR5H2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR5H2 Gene

Disorders for OR5H2 Gene

Relevant External Links for OR5H2

Genetic Association Database (GAD)
OR5H2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR5H2

No disorders were found for OR5H2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR5H2 Gene

Publications for OR5H2 Gene

  1. HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin. (PMID: 19483685) Daly A.K. … . (Nat. Genet. 2009) 3 46 64
  2. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  3. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64

Products for OR5H2 Gene

Sources for OR5H2 Gene

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