Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OR5C1 Gene

Aliases for OR5C1 Gene

  • Olfactory Receptor Family 5 Subfamily C Member 1 2 3 5
  • Olfactory Receptor 5C2 3 4
  • Olfactory Receptor 9-F 3 4
  • OR5C2P 3 4
  • OR9-F 3 4
  • Olfactory Receptor, Family 5, Subfamily C, Member 2 Pseudogene 3
  • Olfactory Receptor, Family 5, Subfamily C, Member 1 2
  • Olfactory Receptor 5C1 3
  • HRPK-465_F_21 3
  • OR9-31 3

External Ids for OR5C1 Gene

Previous HGNC Symbols for OR5C1 Gene

  • OR5C2P

Previous GeneCards Identifiers for OR5C1 Gene

  • GC09U990110
  • GC09P120928
  • GC09P122630
  • GC09P124590
  • GC09P125551

Summaries for OR5C1 Gene

Entrez Gene Summary for OR5C1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR5C1 Gene

OR5C1 (Olfactory Receptor Family 5 Subfamily C Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. Gene Ontology (GO) annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR5W2.

UniProtKB/Swiss-Prot for OR5C1 Gene

  • Odorant receptor.

Gene Wiki entry for OR5C1 Gene

Additional gene information for OR5C1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR5C1 Gene

Genomics for OR5C1 Gene

GeneHancer (GH) Regulatory Elements for OR5C1 Gene

Promoters and enhancers for OR5C1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I122788 Promoter 0.5 EPDnew 550.8 0.0 -16 0.1 OR5C1 GC09P122784
GH09I122819 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.5 +32.0 31963 3.6 HDAC1 PKNOX1 FOXA2 TAF9B TCF12 ZNF766 GATA2 ATF7 CREM CEBPB OR1K1 OR5C1 SNORD90 GC09M122816 PDCL
GH09I122463 Enhancer 1.1 Ensembl ENCODE 9.8 -324.1 -324126 1.9 PKNOX1 SMAD1 ARID4B ZNF2 BRCA1 ARID2 ZNF143 ATF7 DEK RXRA OR1Q1 OR1K1 OR1N1 OR1J4 PTGS1 OR5C1 RBM18 MRRF TTLL11 ENSG00000231465
GH09I122815 Enhancer 1 Ensembl ENCODE dbSUPER 10.5 +27.4 27418 1.8 BCOR ZMYM3 ZIC2 NR2F2 JUND POLR2A ADNP ZNF600 KDM1A MYC GC09M122816 OR5C1 SNORD90 PDCL OR1K1
GH09I122443 Enhancer 0.9 ENCODE 10.2 -343.5 -343549 4.5 PKNOX1 SMAD1 ATF1 ARNT NCOA2 ZNF280A TCF12 ZNF766 GATA2 FOS PTGS1 MRRF ZBTB26 OR1K1 ENSG00000231465 ZBTB6 RC3H2 OR5C1 TTLL11 OR1J2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR5C1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the OR5C1 gene promoter:

Genomic Locations for OR5C1 Gene

Genomic Locations for OR5C1 Gene
chr9:122,788,933-122,789,895
(GRCh38/hg38)
Size:
963 bases
Orientation:
Plus strand
chr9:125,551,150-125,552,237
(GRCh37/hg19)

Genomic View for OR5C1 Gene

Genes around OR5C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR5C1 Gene

Proteins for OR5C1 Gene

  • Protein details for OR5C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGR4-OR5C1_HUMAN
    Recommended name:
    Olfactory receptor 5C1
    Protein Accession:
    Q8NGR4
    Secondary Accessions:
    • B2RN54
    • B9EGT0
    • Q96RC4

    Protein attributes for OR5C1 Gene

    Size:
    320 amino acids
    Molecular mass:
    34991 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR5C1 Gene

Post-translational modifications for OR5C1 Gene

Other Protein References for OR5C1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR5C1 Gene

Domains & Families for OR5C1 Gene

Gene Families for OR5C1 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR5C1 Gene

Suggested Antigen Peptide Sequences for OR5C1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NGR4

UniProtKB/Swiss-Prot:

OR5C1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR5C1: view

Function for OR5C1 Gene

Molecular function for OR5C1 Gene

GENATLAS Biochemistry:
olfactory receptor,family 5,subfamily C,member 1,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR5C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR5C1: view

Phenotypes for OR5C1 Gene

GenomeRNAi human phenotypes for OR5C1:
genes like me logo Genes that share phenotypes with OR5C1: view

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5C1 Gene

Localization for OR5C1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR5C1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR5C1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR5C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR5C1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR5C1 Gene

Pathways & Interactions for OR5C1 Gene

genes like me logo Genes that share pathways with OR5C1: view

Pathways by source for OR5C1 Gene

Interacting Proteins for OR5C1 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 12)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000362784%0d%0a9606.ENSP00000367869%0d%0a9606.ENSP00000248572%0d%0a9606.ENSP00000334051%0d%0a9606.ENSP00000312262%0d%0a9606.ENSP00000359719%0d%0a
Selected Interacting proteins: Q8NGR4-OR5C1_HUMAN ENSP00000362784 for OR5C1 Gene via IID STRING

Gene Ontology (GO) - Biological Process for OR5C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway TAS --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR5C1: view

No data available for SIGNOR curated interactions for OR5C1 Gene

Drugs & Compounds for OR5C1 Gene

No Compound Related Data Available

Transcripts for OR5C1 Gene

mRNA/cDNA for OR5C1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR5C1 Gene

Olfactory receptor, family 5, subfamily C, member 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR5C1 Gene

No ASD Table

Relevant External Links for OR5C1 Gene

GeneLoc Exon Structure for
OR5C1
ECgene alternative splicing isoforms for
OR5C1

Expression for OR5C1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR5C1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR5C1 Gene:

OR5C1

SOURCE GeneReport for Unigene cluster for OR5C1 Gene:

Hs.534761

Evidence on tissue expression from TISSUES for OR5C1 Gene

  • Nervous system(4)
genes like me logo Genes that share expression patterns with OR5C1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR5C1 Gene

Orthologs for OR5C1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR5C1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC473050 33
  • 99.06 (n)
OR5C1 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR5C1 33 34
  • 87.76 (n)
cow
(Bos Taurus)
Mammalia OR5C1 33 34
  • 85.63 (n)
mouse
(Mus musculus)
Mammalia Or5c1 51 Olfr368 33 16 34
  • 83.44 (n)
rat
(Rattus norvegicus)
Mammalia Olr434 33
  • 83.23 (n)
oppossum
(Monodelphis domestica)
Mammalia OR5C1 34
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 50 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 49 (a)
ManyToMany
Species where no ortholog for OR5C1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR5C1 Gene

ENSEMBL:
Gene Tree for OR5C1 (if available)
TreeFam:
Gene Tree for OR5C1 (if available)

Paralogs for OR5C1 Gene

Paralogs for OR5C1 Gene

(423) SIMAP similar genes for OR5C1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with OR5C1: view

Variants for OR5C1 Gene

Sequence variations from dbSNP and Humsavar for OR5C1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000008912 -- 122,788,517(+) G/T upstream_transcript_variant
rs1001819480 -- 122,788,447(+) C/A upstream_transcript_variant
rs1003861514 -- 122,787,681(+) G/A upstream_transcript_variant
rs1003944152 -- 122,787,118(+) AAAAAAA/AAAAAAAA upstream_transcript_variant
rs1004392931 -- 122,789,974(+) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OR5C1 Gene

Variant ID Type Subtype PubMed ID
nsv518250 CNV loss 19592680

Variation tolerance for OR5C1 Gene

Residual Variation Intolerance Score: 70.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.73; 46.67% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OR5C1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR5C1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR5C1 Gene

Disorders for OR5C1 Gene

Additional Disease Information for OR5C1

No disorders were found for OR5C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR5C1 Gene

Publications for OR5C1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 4 58

Products for OR5C1 Gene

Sources for OR5C1 Gene

Content
Loading form....