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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

OR52E4 Gene

protein-coding   GIFtS: 45
GCID: GC11P005905

Olfactory Receptor, Family 52, Subfamily E, Member 4

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Olfactory Receptor, Family 52, Subfamily E, Member 41 2
Olfactory Receptor OR11-552 3
OR11-552
Olfactory Receptor 52E42

External Ids:    HGNC: 152131   Entrez Gene: 3900812   Ensembl: ENSG000001809747   UniProtKB: Q8NGH93   

Export aliases for OR52E4 gene to outside databases

Previous GC identifers: GC11U990501 GC11P005870 GC11P005862


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for OR52E4 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR52E4 Gene: 
OR52E4 (olfactory receptor, family 52, subfamily E, member 4) is a protein-coding gene. Diseases associated with OR52E4 include neuronitis, and among its related super-pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR52D1.

UniProtKB/Swiss-Prot: O52E4_HUMAN, Q8NGH9
Function: Odorant receptor (Potential)

Gene Wiki entry for OR52E4 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.2  NT_009237.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the OR52E4 gene promoter:
         HOXA9B   HOXA9   E2F-3a   E2F-4   E2F-5   E2F-2   Meis-1b   E2F   E2F-1   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOR52E4 promoter sequence
   Search SABiosciences Chromatin IP Primers for OR52E4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR52E4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.4   Ensembl cytogenetic band:  11p15.4   HGNC cytogenetic band: 11p15.4

OR52E4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR52E4 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P005905:  view genomic region     (about GC identifiers)

Start:
5,905,523 bp from pter      End:
5,906,458 bp from pter
Size:
936 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: O52E4_HUMAN, Q8NGH9 (See protein sequence)
Recommended Name: Olfactory receptor 52E4  
Size: 312 amino acids; 35480 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: Q6IFG0

Explore the universe of human proteins at neXtProt for OR52E4: NX_Q8NGH9

Explore proteomics data for OR52E4 at MOPED 

HORDE protein sequence for OR52E4
OR52E4 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

OR52E4 Protein Expression

REFSEQ proteins: NP_001005165.1  
ENSEMBL proteins: 
 ENSP00000321426  
Reactome Protein details: Q8NGH9
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Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005886plasma membrane TAS--
GO:0016021integral to membrane IEA--

OR52E4 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
OR52: GPCR / Class A : Olfactory receptors

3 InterPro protein domains:
 IPR017452 GPCR_Rhodpsn_7TM
 IPR000725 Olfact_rcpt
 IPR000276 GPCR_Rhodpsn

Graphical View of Domain Structure for InterPro Entry Q8NGH9

ProtoNet protein and cluster: Q8NGH9

1 Blocks protein domain: IPB000725 Olfactory receptor signature

UniProtKB/Swiss-Prot: O52E4_HUMAN, Q8NGH9
Similarity: Belongs to the G-protein coupled receptor 1 family


OR52E4 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: O52E4_HUMAN, Q8NGH9
Function: Odorant receptor (Potential)

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0004930G-protein coupled receptor activity IEA--
GO:0004984olfactory receptor activity IEA--
     
OR52E4 for ontologies           About GeneDecksing


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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for OR52E4 About                                                                                                See pathways by source

SuperPathContained pathways About
1Olfactory transduction
Olfactory Signaling Pathway0.81
Olfactory transduction0.81
2Signaling by GPCR
Signaling by GPCR0.90
Signal Transduction0.55
GPCR downstream signaling0.90

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


4        Reactome Pathways for OR52E4
    GPCR downstream signaling
Olfactory Signaling Pathway
Signal Transduction
Signaling by GPCR


1         Kegg Pathway  (Kegg details for OR52E4):
    Olfactory transduction


OR52E4 for pathways           About GeneDecksing

Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OR52E4

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/273 Interacting proteins for OR52E4 (ENSP000003214264) via UniProtKB, MINT, STRING, and/or I2D (see all 273)
InteractantInteraction Details
GeneCardExternal ID(s)
OR52E6ENSP000003288784STRING: ENSP00000369279 STRING: ENSP00000328878
GNALENSP000003340514STRING: ENSP00000334051
OR8A1ENSP000002842874STRING: ENSP00000284287
GNGT1ENSP000002485724STRING: ENSP00000248572
OR10A3ENSP000003539884STRING: ENSP00000353988
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007186G-protein coupled receptor signaling pathway ----

OR52E4 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for OR52E4 (O52E4)

Search CenterWatch for drugs/clinical trials and news about OR52E4 / O52E4

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for OR52E4 gene: 
NM_001005165.1  

Unigene Cluster for OR52E4:

Olfactory receptor, family 52, subfamily E, member 4
Hs.553739
Unigene Representative Sequence: BC136972
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000316987(uc010qzs.2)
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Additional mRNA sequence: 

BC136972.1 BC136974.1 

1 AceView cDNA sequence:

NM_001005165 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

OR52E4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TCTGTGTTAT
OR52E4 Expression
About this image


See OR52E4 Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.553739
    SABiosciences Custom PCR Arrays for OR52E4
Primer
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for OR52E4 gene from 1/6 species (see all 6)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Olfr6771 , 5 olfactory receptor 6771, 5 84.62(n)1
85.58(a)1
  7 (55.74 cM)5
2583551  NM_146358.11  NP_666470.11 
 1050562485 


ENSEMBL Gene Tree for OR52E4 (if available)
TreeFam Gene Tree for OR52E4 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for OR52E4 gene
OR52D12  OR52I12  OR52I22  OR52B62  OR52E22  OR52B22  OR52J32  OR52E62  
ENSG000001809092  OR52E82  OR52B42  OR52H12  
18/456 SIMAP similar genes for OR52E4 using alignment to 2 protein entries:     O52E4_HUMAN (see all proteins) (see all similar genes):
OR52E8    OR52E2    OR52E6    OR52E1    OR52J3    OR52E5
OR52Z1    OR52D1    OR52R1    OR52B2    OR52N2    OR52L1
OR52H1    OR51E1    OR51G2    OR52B6    OR52K3P    OR52L2P

OR52E4 for paralogs           About GeneDecksing


2 Pseudogenes.org Pseudogenes for OR52E4
PGOHUM00000242582 PGOHUM00000242583


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/143 SNPs in OR52E4 are shown (see all 143)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1392727561,2
--5903557(+) TATCAC/TGTTGA 1 -- us2k10--------
rs1499523541,2
C--5903600(+) GGACTA/GTAAAT 1 -- us2k10--------
rs1835875851,2
C--5903692(+) TGGCAC/TCTTTT 1 -- us2k10--------
rs1885163521,2
--5903725(+) GTTCTC/TTTTTC 1 -- us2k10--------
rs1152159291,2
C,F--5903749(+) CTTCTC/TGGGGA 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1142234711,2
F--5903770(+) CTCTTG/CTTCTT 1 -- us2k11Minor allele frequency- C:0.03WA 118
rs9359581,2
C,F,O,H--5903782(-) ATTCTA/GTATGA 1 -- us2k118Minor allele frequency- G:0.23MN NA WA CSA EA 707
rs9359571,2
C,F,O,H--5903810(-) ACACAG/AGCAAA 1 -- us2k1102Minor allele frequency- A:0.18NS MN EA PA EU CA WA NA CSA 5043
rs1177994481,2
C,F--5903890(+) AAACAT/CGATTT 1 -- us2k11Minor allele frequency- C:0.02EA 120
rs9359561,2
C,F,A,H--5903927(-) GAGACA/GGAGAA 1 -- us2k113Minor allele frequency- G:0.19NS EA NA WA CSA 421

HapMap Linkage Disequilibrium report for OR52E4 ( 5905523 - 5906458 bp)

Structural Variations
     Database of Genomic Variants (DGV) 10/25 variations for OR52E4 (see all 25):    About this table     
Variant IDTypeSubtypePubMed ID
nsv471362CNV Duplication19718026
nsv818796CNV Gain17921354
dgv131n27CNV Gain19166990
nsv825754CNV Gain20364138
dgv1029n71CNV Gain21882294
dgv130n27CNV Gain19166990
dgv39e55CNV Gain17911159
dgv1028n71CNV Gain21882294
nsv896961CNV Gain21882294
nsv515489CNV Gain19592680

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
2 diseases for OR52E4:    About MalaCards
neuronitis    


OR52E4 for disorders           About GeneDecksing


Export disorders for OR52E4 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for OR52E4 gene integrated from 9 sources:
(articles sorted by number of sources associating them with OR52E4)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (2004)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  3. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 390081 HGNC: 15213 AceView: OR52E4 Ensembl:ENSG00000180974 euGenes: HUgn390081
ECgene: OR52E4 Kegg: 390081 H-InvDB: OR52E4

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for OR52E4 Pharmacogenomics, SNPs, Pathways
HORDE entry for OR52E4 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for OR52E4 gene:
Search GeneIP for patents involving OR52E4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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