Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OR52E2 Gene

Aliases for OR52E2 Gene

  • Olfactory Receptor Family 52 Subfamily E Member 2 2 3 5
  • Olfactory Receptor, Family 52, Subfamily E, Member 2 2

External Ids for OR52E2 Gene

Previous GeneCards Identifiers for OR52E2 Gene

  • GC11U990308
  • GC11M005046

Summaries for OR52E2 Gene

Entrez Gene Summary for OR52E2 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR52E2 Gene

OR52E2 (Olfactory Receptor Family 52 Subfamily E Member 2) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR52E4.

UniProtKB/Swiss-Prot for OR52E2 Gene

  • Odorant receptor.

Gene Wiki entry for OR52E2 Gene

Additional gene information for OR52E2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR52E2 Gene

Genomics for OR52E2 Gene

Regulatory Elements for OR52E2 Gene

Enhancers for OR52E2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H005546 0.3 FANTOM5 11.4 -486.6 -486619 0 OR56A1 OR56A3 OR51Q1 OR52E8 OR52N1 OR56A4 OR52N4 OR52E2 OR52E4 OR52A1
GH11H005379 0.3 FANTOM5 4.8 -320.4 -320365 0 OR51V1 OR51T1 HBB OR51B5 OR51G1 OR56B1 OR52J3 OR51L1 OR52N4 OR52D1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR52E2 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR52E2 Gene

Chromosome:
11
Start:
5,058,650 bp from pter
End:
5,059,627 bp from pter
Size:
978 bases
Orientation:
Minus strand

Genomic View for OR52E2 Gene

Genes around OR52E2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR52E2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR52E2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR52E2 Gene

Proteins for OR52E2 Gene

  • Protein details for OR52E2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGJ4-O52E2_HUMAN
    Recommended name:
    Olfactory receptor 52E2
    Protein Accession:
    Q8NGJ4

    Protein attributes for OR52E2 Gene

    Size:
    325 amino acids
    Molecular mass:
    36630 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR52E2 Gene

Post-translational modifications for OR52E2 Gene

  • Glycosylation at posLast=55
  • Modification sites at PhosphoSitePlus

Other Protein References for OR52E2 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR52E2 Gene

Domains & Families for OR52E2 Gene

Gene Families for OR52E2 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR52E2 Gene

Suggested Antigen Peptide Sequences for OR52E2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGJ4

UniProtKB/Swiss-Prot:

O52E2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR52E2: view

Function for OR52E2 Gene

Molecular function for OR52E2 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR52E2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR52E2: view

Phenotypes for OR52E2 Gene

GenomeRNAi human phenotypes for OR52E2:
genes like me logo Genes that share phenotypes with OR52E2: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for OR52E2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR52E2 Gene

Localization for OR52E2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR52E2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR52E2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR52E2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IBA,TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR52E2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR52E2 Gene

Pathways & Interactions for OR52E2 Gene

genes like me logo Genes that share pathways with OR52E2: view

Pathways by source for OR52E2 Gene

Interacting Proteins for OR52E2 Gene

Gene Ontology (GO) - Biological Process for OR52E2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IBA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR52E2: view

No data available for SIGNOR curated interactions for OR52E2 Gene

Drugs & Compounds for OR52E2 Gene

(1) Drugs for OR52E2 Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Lithium Approved Pharma 0
genes like me logo Genes that share compounds with OR52E2: view

Transcripts for OR52E2 Gene

mRNA/cDNA for OR52E2 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for OR52E2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for OR52E2 Gene

No ASD Table

Relevant External Links for OR52E2 Gene

GeneLoc Exon Structure for
OR52E2
ECgene alternative splicing isoforms for
OR52E2

Expression for OR52E2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR52E2 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR52E2 Gene:

OR52E2

SOURCE GeneReport for Unigene cluster for OR52E2 Gene:

Hs.553557
genes like me logo Genes that share expression patterns with OR52E2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR52E2 Gene

Orthologs for OR52E2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR52E2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466365 33
  • 98.87 (n)
OR52E2 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR52E2 34
  • 86 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC511823 33
  • 85.42 (n)
OR52E2 34
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Or52e2 52 Olfr589 34
  • 84 (a)
OneToOne
Olfr594 33 16
  • 83.49 (n)
rat
(Rattus norvegicus)
Mammalia Olr85 33
  • 83.17 (n)
oppossum
(Monodelphis domestica)
Mammalia OR52E2 34
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 65 (a)
ManyToMany
-- 34
  • 62 (a)
ManyToMany
Species where no ortholog for OR52E2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR52E2 Gene

ENSEMBL:
Gene Tree for OR52E2 (if available)
TreeFam:
Gene Tree for OR52E2 (if available)

Paralogs for OR52E2 Gene

(457) SIMAP similar genes for OR52E2 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR52E2 Gene

genes like me logo Genes that share paralogs with OR52E2: view

Variants for OR52E2 Gene

Sequence variations from dbSNP and Humsavar for OR52E2 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000070142 -- 5,059,858(+) TACAG(C/T)AAATT upstream-variant-2KB
rs1002036719 -- 5,060,525(+) AAAGT(C/G)TAATG upstream-variant-2KB
rs1002536169 -- 5,060,775(+) ATGCA(A/G)TCATG upstream-variant-2KB
rs1003129031 -- 5,059,626(+) GGAAC(A/G)TCCTG reference, missense
rs1004634666 -- 5,059,274(+) ATTGC(C/T)ACAAG reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for OR52E2 Gene

Variant ID Type Subtype PubMed ID
esv2759799 CNV loss 17122850
esv2760169 CNV gain+loss 21179565
nsv1054847 CNV gain 25217958
nsv553219 CNV gain 21841781

Variation tolerance for OR52E2 Gene

Residual Variation Intolerance Score: 95.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.10; 93.83% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR52E2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR52E2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR52E2 Gene

Disorders for OR52E2 Gene

Relevant External Links for OR52E2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR52E2

No disorders were found for OR52E2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR52E2 Gene

Publications for OR52E2 Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor TD … Sakaki Y (Nature 2006) 4 60
  2. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 60

Products for OR52E2 Gene

Sources for OR52E2 Gene

Content
Loading form....