OR52D1 Gene
protein-coding GIFtS: 50
GCID: GC11P005509
|
|
olfactory receptor, family 52, subfamily D, member 1
| |
Aliases
for OR52D1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Olfactory Receptor, Family 52, Subfamily D, Member 11 2 | | Odorant Receptor HOR5'Beta142 3 | | Olfactory Receptor OR11-432 3 | | OR11-432 | | HOR 5'Beta142 | | Olfactory Receptor 52D12 |
Export aliases for OR52D1 gene to outside databasesPrevious GC identifers: GC11U990502 GC11P005475 GC11P005466 |
Summaries
for OR52D1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for OR52D1:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers theperception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors(GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with manyneurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction ofodorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to theolfactory receptor genes and proteins for this organism is independent of other organisms. (provided by RefSeq, Jul2008)
UniProtKB/Swiss-Prot: O52D1_HUMAN, Q9H346Function: Odorant receptor (Potential)
Gene Wiki entry for OR52D1
|
Genomic Views
for OR52D1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000011.9 NC_018922.1 NT_009237.18
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the OR52D1 gene promoter:
Bach1 PPAR-gamma1 Ik-2 FOXJ2 (long isoform) Lmo2 FOXJ2 PPAR-gamma2 E4BP4 HNF-4alpha1
Other transcription factors
Search SABiosciences Chromatin IP Primers for OR52D1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR52D1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 11p15.4 Ensembl cytogenetic band: 11p15.4 HGNC cytogenetic band: 11p15.4OR52D1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11P005509: view genomic region
(about GC identifiers)
Start:
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5,509,937 bp from pter |
End:
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5,510,890 bp from pter |
Size:
|
954 bases |
Orientation:
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plus strand |
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Proteins
for OR52D1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: O52D1_HUMAN, Q9H346 (See
protein sequence)Recommended Name: Olfactory receptor 52D1 Size: 318 amino acids; 35122 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: B9EGY9 Q6IFI6Explore the universe of human proteins at neXtProt for OR52D1: NX_Q9H346
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9H346
HORDE protein sequence for OR52D1
OR52D1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001005163.1
ENSEMBL proteins: ENSP00000326232 Reactome Protein details: Q9H346
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
OR52D1 for ontologies About GeneDecksing
OR52D1 Antibody Products:
Assay Products for OR52D1: |
Protein
Domains /
Families
for OR52D1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
OR52D1 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9H346ProtoNet protein and cluster: Q9H346 1 Blocks protein family: IPB000725 Olfactory receptor signature
UniProtKB/Swiss-Prot: O52D1_HUMAN, Q9H346Similarity: Belongs to the G-protein coupled receptor 1 family |
Function
for OR52D1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: O52D1_HUMAN, Q9H346Function: Odorant receptor (Potential)
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR52D1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR52D1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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| |  | GenScript: all cDNA clones in your preferred vector: OR52D1 (NM_001005163) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OR52D1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR52D1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR52D1 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0004984 | olfactory receptor activity |
NAS | 11121057 |
OR52D1 for ontologies About GeneDecksing
|
Pathways & Interactions
for OR52D1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Signaling by GPCR | | | 2 | Olfactory transduction | |
Pathway sources
See GeneCards unified pathways
Show all pathways
4 
Reactome Pathways for OR52D1
1 
Kegg Pathway (Kegg details for OR52D1):
OR52D1 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OR52D1
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/273 Interacting proteins for OR52D1 (ENSP000003262324) via UniProtKB, MINT, STRING, and/or I2D (see all 273)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007608 | sensory perception of smell |
NAS | 11121057 | | GO:0050911 | detection of chemical stimulus involved in sensory perception of smell |
NAS | 11121057 |
OR52D1 for ontologies About GeneDecksing
|
Drugs & Compounds
for OR52D1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for OR52D1
Search CenterWatch for drugs/clinical trials and news about OR52D1 / O52D1
|
Transcripts
for OR52D1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for OR52D1 gene: NM_001005163.2 Unigene Cluster for OR52D1: Olfactory receptor, family 52, subfamily D, member 1 Hs.553734 Unigene Representative Sequence: NM_0010051631 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000322641(uc010qzg.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR52D1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR52D1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: OR52D1 (NM_001005163) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OR52D1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR52D1 |
Additional cDNA sequence: BC136928.1 BC136930.1 1 AceView cDNA sequence: NM_001005163
GeneLoc Exon Structure
|
Expression
for OR52D1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| OR52D1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TGCACATCTT
About this image
See OR52D1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for OR52D1
SOURCE GeneReport for Unigene cluster: Hs.553734
SABiosciences Custom PCR Arrays for OR52D1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for OR52D1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat OR52D1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR52D1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR52D1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR52D1 |
Orthologs
for OR52D1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for OR52D1 gene from 1/7 species (see all 7) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
zebrafish
(Danio rerio) |
Actinopterygii |
CABZ01018874.16 |
-- |
34(a) |
1 → many |
15(5202740-5204422) |
ENSEMBL Gene Tree for OR52D1 (if available)
TreeFam Gene Tree for OR52D1 (if available) |
Paralogs
for OR52D1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for OR52D1 gene
- OR52N42 OR52K12 OR52J32 OR52B22 OR52E62 OR52B42 OR52N22 OR52A12
- OR52L12 OR52M12 OR52N52 OR52B1P2 OR52E42 OR52K22 OR52B62 OR52E22
- OR52R12 OR52N12 OR52E82 OR52H12 OR52A52
18/428 SIMAP similar genes for OR52D1 using alignment to 1 protein entry: O52D1_HUMAN(see all similar genes):OR52B2 OR52E8 OR52L1 OR52L2P OR52E2 OR52J3
OR52R1 OR52Z1 OR52E4 OR52E1 OR52E5 OR52E6
OR52M1 OR52P1P OR52A1 OR52A5 OR52B6 OR52H1
OR52D1 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for OR52D1
PGOHUM00000242139
|
Genomic Variants
for OR52D1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 11 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for OR52D1 ( 5509937 - 5510890 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for OR52D1
1 CNV: 34458 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing OR52D1 |
|
Disorders
/ Diseases
for OR52D1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
OR52D1 for disorders About GeneDecksing
1  disease for OR52D1: About MalaCardsneuronitis
Human Genome Epidemiology (HuGE) Navigator: OR52D1 (1 document)
Export disorders for OR52D1 gene to outside databases
|
Publications
for OR52D1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for OR52D1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with OR52D1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (2004)
- Comparative structural and functional analysis of the olfactory receptor genes flanking the human and mouse beta-globin gene clusters. (PubMed id 11121057)1, 2 Bulger M.... Hardison R. (2000)
- An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PubMed id 20677014)1 Shimada M....Tokunaga K. (2010)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Conservation of sequence and structure flanking the mouse and human beta-globin loci: the beta-globin genes are embedded within an array of odorant receptor genes. (PubMed id 10220430)1 Bulger M.... Groudine M. (1999)
|
External Searches for OR52D1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing OR52D1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing OR52D1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing OR52D1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for OR52D1 | Pharmacogenomics, SNPs, Pathways | | HORDE entry for OR52D1 | The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science |
|
| | |
About This Section
| Patent Information for OR52D1 gene:
Search GeneIP for patents involving OR52D1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for OR52D1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for OR52D1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for OR52D1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for OR52D1 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for OR52D1 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR52D1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR52D1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for OR52D1 | | OriGene Custom Protein Services for OR52D1 | | | OriGene Custom Immunoassay Development | | |
| |
 |
 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OR52D1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing OR52D1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR52D1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat OR52D1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR52D1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR52D1 |
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 |  |  |  | |
| | | | Search Tocris compounds for OR52D1 |
| |  |  |  |  | | | | |
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 | | | OR52D1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR52D1 |
|  |  |  | | | | ThermoFisher Antibodies for OR52D1 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR52D1 |
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