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OR52B4 Gene

protein-coding   GIFtS: 47
GCID: GC11M004388

Olfactory Receptor, Family 52, Subfamily B, Member 4

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Olfactory Receptor, Family 52, Subfamily B, Member 41 2
Olfactory Receptor OR11-32 3
OR11-32
Olfactory Receptor 52B42

External Ids:    HGNC: 152091   Entrez Gene: 1434962   Ensembl: ENSG000002219967   UniProtKB: Q8NGK23   

Export aliases for OR52B4 gene to outside databases

Previous GC identifers: GC11U990505 GC11M004353 GC11M004345


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for OR52B4 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR52B4 Gene:
OR52B4 (olfactory receptor, family 52, subfamily B, member 4) is a protein-coding gene. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR52D1.

UniProtKB/Swiss-Prot: O52B4_HUMAN, Q8NGK2
Function: Odorant receptor (Potential)

Gene Wiki entry for OR52B4 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_009237.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the OR52B4 gene promoter:
         c-Fos   E2F-3a   E2F-4   E2F-5   Fra-1   FosB   E2F-2   E2F-1   E2F   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOR52B4 promoter sequence
   Search Chromatin IP Primers for OR52B4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR52B4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.4   Ensembl cytogenetic band:  11p15.4   HGNC cytogenetic band: 11p15.4

OR52B4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR52B4 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M004388:  view genomic region     (about GC identifiers)

Start:
4,388,584 bp from pter      End:
4,389,525 bp from pter
Size:
942 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: O52B4_HUMAN, Q8NGK2 (See protein sequence)
Recommended Name: Olfactory receptor 52B4  
Size: 314 amino acids; 35584 Da
Secondary accessions: A6NP68 Q6IFK6

Explore the universe of human proteins at neXtProt for OR52B4: NX_Q8NGK2

Explore proteomics data for OR52B4 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn5
  • HORDE protein sequence for OR52B4

    See OR52B4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001005161.2  
    ENSEMBL proteins: 
     ENSP00000386160  
    Reactome Protein details: Q8NGK2

    OR52B4 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    OR52: GPCR / Class A : Olfactory receptors

    3 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000725 Olfact_rcpt
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q8NGK2

    ProtoNet protein and cluster: Q8NGK2

    1 Blocks protein domain: IPB000725 Olfactory receptor signature

    UniProtKB/Swiss-Prot: O52B4_HUMAN, Q8NGK2
    Similarity: Belongs to the G-protein coupled receptor 1 family


    Find genes that share domains with OR52B4           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: O52B4_HUMAN, Q8NGK2
    Function: Odorant receptor (Potential)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
    GO:0004984olfactory receptor activity IEA--
         
    Find genes that share ontologies with OR52B4           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for OR52B4
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    O52B4_HUMAN, Q8NGK2: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with OR52B4           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for OR52B4 About    
    See pathways by source

    SuperPathContained pathways About
    1Olfactory Signaling Pathway
    Olfactory Signaling Pathway0.82
    Olfactory transduction0.82
    2Signaling by GPCR
    Signaling by GPCR0.90
    Signal Transduction0.58
    GPCR downstream signaling0.90


    Find genes that share SuperPaths with OR52B4           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for OR52B4
        Olfactory Signaling Pathway


    1 Kegg Pathway  (Kegg details for OR52B4):
        Olfactory transduction

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OR52B4
    Interactions:

        Search GeneGlobe Interaction Network for OR52B4

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for OR52B4 (ENSP000003861604) via UniProtKB, MINT, STRING, and/or I2D (see all 273)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    OR52E6ENSP000003288784STRING: ENSP00000369279 STRING: ENSP00000328878
    OR11G2ENSP000003499304STRING: ENSP00000349930
    OR2V1ENSP000004041024STRING: ENSP00000404102
    OR2V2ENSP000003321854STRING: ENSP00000332185
    OR52D1ENSP000003262324STRING: ENSP00000326232
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway ----

    Find genes that share ontologies with OR52B4           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OR52B4 (O52B4)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for OR52B4 gene: 
    NM_001005161.3  

    Unigene Cluster for OR52B4:

    Olfactory receptor, family 52, subfamily B, member 4
    Hs.447463
    Unigene Representative Sequence: NM_001005161
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000408920(uc010qye.2)
    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat OR52B4

    Additional mRNA sequence: BC140928.1 

    1 DOTS entry:

    DT.95196475 

    1 AceView cDNA sequence:

    NM_001005161 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OR52B4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCTTCTCCAG
    OR52B4 Expression
    About this image

    OR52B4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OR52B4 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.447463
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for OR52B4 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Olfr5471 , 5 olfactory receptor 5471, 5 85.27(n)1
    85.16(a)1
      7 (54.75 cM)5
    2590831  NM_147079.21  NP_667290.21 
     1025347495 


    ENSEMBL Gene Tree for OR52B4 (if available)
    TreeFam Gene Tree for OR52B4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for OR52B4 gene
    OR52D12  OR52B1P2  OR52E42  ENSG000002730852  OR52B62  OR52E22  OR52B22  OR52J32  
    OR52E62  OR52E82  OR52H12  
    Selected SIMAP similar genes for OR52B4 using alignment to 2 protein entries:     O52B4_HUMAN (see all proteins) (see all similar genes):
    OR52B1P    OR52Z1    OR52B2    OR52D1    OR52H1    OR52B6
    OR52A1    OR52E8    OR52A5    OR51F2    OR52J3    OR52L2P
    OR52R1    OR51E2    OR52P1P    OR52E2    OR52E4    OR51E1

    Find genes that share paralogs with OR52B4           About GenesLikeMe


    1 Pseudogenes.org Pseudogene for OR52B4
    PGOHUM00000242563


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Polymorphic Variants from UniProtKB/Swiss-Prot
    O52B4_HUMAN, Q8NGK2: A stop codon at position Ala-40 in the gene coding for this protein is responsible for functional
    diversity thus producing a pseudogene. The stop codon is more frequent in non-Africans than in African-Americans


    Selected SNPs for OR52B4 (see all 124)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1411360991,2
    --4388013(+) TCCTCA/CAGGGT 1 -- ds50010--------
    rs1507497341,2
    --4388191(+) TGTACA/GTGACT 1 -- ds50010--------
    rs1379623621,2
    --4388199(+) ACTTTA/TCATGA 1 -- ds50010--------
    rs1894655361,2
    --4388267(+) TGCCAG/TAGCAC 1 -- ds50010--------
    rs1119693031,2
    F--4388271(+) AGAGCC/ACTGTT 1 -- ds50011Minor allele frequency- A:0.50CSA 2
    rs1463609521,2
    --4388290(+) ATTTCC/TGAAGA 1 -- ds50010--------
    rs1114274201,2
    C--4388408(+) TTCCTG/AGGTTG 1 -- ds50011Minor allele frequency- A:0.50CSA 2
    rs734310661,2
    C,F--4388424(+) AAAATG/AGAAGA 1 -- ds50011Minor allele frequency- A:0.50WA 2
    rs358467961,2
    F--4388526(+) ACTTTC/TATACC 1 -- ut312Minor allele frequency- T:0.50NA 4
    rs618857671,2
    C--4388527(+) CTTTCA/TTACCC 1 -- ut313Minor allele frequency- T:0.08NA EA 242

    HapMap Linkage Disequilibrium report for OR52B4 ( 4388584 - 4389525 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 7 variations for OR52B4:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv832054CNV Gain17160897
    dgv1021n71CNV Gain21882294
    nsv896908CNV Gain21882294
    nsv428248CNV Gain+Loss18775914
    essv17026CNV CNV17122850
    dgv338e1CNV Complex17122850
    nsv469800CNV Complex16826518

    Human Gene Mutation Database (HGMD): OR52B4
    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    Find genes that share disorders with OR52B4           About GenesLikeMe

    Genetic Association Database (GAD): OR52B4
    Human Genome Epidemiology (HuGE) Navigator: OR52B4 (1 document)

    Export disorders for OR52B4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OR52B4 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OR52B4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. An approach based on a genome-wide association study reveals candidate loci for narcolepsy. (PubMed id 20677014)1, 4 Shimada M....Tokunaga K. (Hum. Genet. 2010)
    2. The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
    4. Different noses for different people. (PubMed id 12730696)2 Menashe I.... Gilad Y. (Nat. Genet. 2003)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    6. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 143496 HGNC: 15209 AceView: OR52B4 Ensembl:ENSG00000221996 euGenes: HUgn143496
    ECgene: OR52B4 Kegg: 143496 H-InvDB: OR52B4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OR52B4 Pharmacogenomics, SNPs, Pathways
    HORDE entry for OR52B4 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OR52B4 gene:
    Search GeneIP for patents involving OR52B4

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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     Browse OriGene Antibodies   OriGene RNAi products in human, mouse, rat for OR52B4  
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      eBioscience FlowRNA Probe Sets
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      Search antibodies-online for antibodies for OR52B4
     antibodies-online kits for OR52B4 (14 products)
      Search antibodies-online for peptides for OR52B4
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