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Aliases for OR52A4P Gene

Aliases for OR52A4P Gene

  • Olfactory Receptor Family 52 Subfamily A Member 4 Pseudogene 2 3 5
  • Olfactory Receptor, Family 52, Subfamily A, Member 4, Pseudogene 2 3
  • OR52A4 3 4
  • Olfactory Receptor, Family 52, Subfamily A, Member 4 2
  • Putative Olfactory Receptor 52A4 3

External Ids for OR52A4P Gene

Previous HGNC Symbols for OR52A4P Gene

  • OR52A4

Summaries for OR52A4P Gene

Entrez Gene Summary for OR52A4P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. Although originally considered to be a functional olfactory receptor, this family member is now considered to be pseudogene due to the presence of a C-terminal frameshift compared to other family members; this is also consistent with the Classifier for Olfactory Receptor Pseudogenes (CORP), as described in PMID:16939646. [provided by RefSeq, Jun 2011]

GeneCards Summary for OR52A4P Gene

OR52A4P (Olfactory Receptor Family 52 Subfamily A Member 4 Pseudogene) is a Pseudogene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity.

UniProtKB/Swiss-Prot for OR52A4P Gene

  • Odorant receptor.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR52A4P Gene

Genomics for OR52A4P Gene

Genomic Location for OR52A4P Gene

Chromosome:
11
Start:
5,120,621 bp from pter
End:
5,124,513 bp from pter
Size:
3,893 bases
Orientation:
Minus strand

Genomic View for OR52A4P Gene

Genes around OR52A4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR52A4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR52A4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR52A4P Gene

No data available for Regulatory Elements for OR52A4P Gene

Proteins for OR52A4P Gene

  • Protein details for OR52A4P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NMU1-O52A4_HUMAN
    Recommended name:
    Olfactory receptor 52A4
    Protein Accession:
    A6NMU1
    Secondary Accessions:
    • B9EIN7

    Protein attributes for OR52A4P Gene

    Size:
    304 amino acids
    Molecular mass:
    34901 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR52A4P Gene

Proteomics data for OR52A4P Gene at MOPED

Post-translational modifications for OR52A4P Gene

No data available for DME Specific Peptides for OR52A4P Gene

Domains & Families for OR52A4P Gene

Gene Families for OR52A4P Gene

Protein Domains for OR52A4P Gene

Suggested Antigen Peptide Sequences for OR52A4P Gene

Graphical View of Domain Structure for InterPro Entry

A6NMU1

UniProtKB/Swiss-Prot:

O52A4_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR52A4P: view

Function for OR52A4P Gene

Molecular function for OR52A4P Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Phenotypes for OR52A4P Gene

GenomeRNAi human phenotypes for OR52A4P:
genes like me logo Genes that share phenotypes with OR52A4P: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR52A4P Gene

Localization for OR52A4P Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR52A4P Gene

Cell membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for OR52A4P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR52A4P: view

No data available for Subcellular locations from COMPARTMENTS for OR52A4P Gene

Pathways & Interactions for OR52A4P Gene

genes like me logo Genes that share pathways with OR52A4P: view

Pathways by source for OR52A4P Gene

Interacting Proteins for OR52A4P Gene

Gene Ontology (GO) - Biological Process for OR52A4P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR52A4P: view

No data available for SIGNOR curated interactions for OR52A4P Gene

Drugs & Compounds for OR52A4P Gene

No Compound Related Data Available

Transcripts for OR52A4P Gene

mRNA/cDNA for OR52A4P Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR52A4P Gene

No ASD Table

Relevant External Links for OR52A4P Gene

GeneLoc Exon Structure for
OR52A4P
ECgene alternative splicing isoforms for
OR52A4P

Expression for OR52A4P Gene

mRNA expression in normal human tissues for OR52A4P Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for OR52A4P Gene



genes like me logo Genes that share expression patterns with OR52A4P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for OR52A4P Gene

Orthologs for OR52A4P Gene

Evolution for OR52A4P Gene

ENSEMBL:
Gene Tree for OR52A4P (if available)
TreeFam:
Gene Tree for OR52A4P (if available)

No data available for Orthologs for OR52A4P Gene

Paralogs for OR52A4P Gene

No data available for Paralogs for OR52A4P Gene

Variants for OR52A4P Gene

Sequence variations from dbSNP and Humsavar for OR52A4P Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
VAR_037540 -
VAR_037541 -
VAR_037542 -
VAR_062081 -

Relevant External Links for OR52A4P Gene

HapMap Linkage Disequilibrium report
OR52A4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OR52A4P Gene

Disorders for OR52A4P Gene

Relevant External Links for OR52A4P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR52A4P

No disorders were found for OR52A4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR52A4P Gene

Publications for OR52A4P Gene

  1. A probabilistic classifier for olfactory receptor pseudogenes. (PMID: 16939646) Menashe I. … Lancet D. (BMC Bioinformatics 2006) 3 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR52A4P Gene

Sources for OR52A4P Gene

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