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OR4M1 Gene

protein-coding   GIFtS: 44
GCID: GC14P020248

Olfactory Receptor, Family 4, Subfamily M, Member 1

  Search for OR4M1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Olfactory Receptor, Family 4, Subfamily M, Member 11 2
Olfactory Receptor OR14-72 3
OR14-72
Olfactory Receptor 4M12

External Ids:    HGNC: 147351   Entrez Gene: 4416702   Ensembl: ENSG000001762997   UniProtKB: Q8NGD03   

Export aliases for OR4M1 gene to outside databases

Previous GC identifers: GC14U990421 GC14P018234 GC14P019318


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for OR4M1 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR4M1 Gene:
OR4M1 (olfactory receptor, family 4, subfamily M, member 1) is a protein-coding gene. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4D11.

UniProtKB/Swiss-Prot: OR4M1_HUMAN, Q8NGD0
Function: Odorant receptor (Potential)

Gene Wiki entry for OR4M1 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000014.8  NC_018925.2  NT_026437.13  
Regulatory elements:
   Regulatory transcription factor binding sites in the OR4M1 gene promoter:
         Elk-1   AP-1   FOXF2   AML1a   ATF-2   Bach2   SREBP-1c   C/EBPalpha   SREBP-1b   SREBP-1a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR4M1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q11.2   Ensembl cytogenetic band:  14q11.2   HGNC cytogenetic band: 14q11.2

OR4M1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR4M1 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P020248:  view genomic region     (about GC identifiers)

Start:
20,248,482 bp from pter      End:
20,249,420 bp from pter
Size:
939 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: OR4M1_HUMAN, Q8NGD0 (See protein sequence)
Recommended Name: Olfactory receptor 4M1  
Size: 313 amino acids; 35488 Da
Secondary accessions: B9EH18 Q6IFA3

Explore the universe of human proteins at neXtProt for OR4M1: NX_Q8NGD0

Explore proteomics data for OR4M1 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn5
  • HORDE protein sequence for OR4M1

    See OR4M1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001005500.1  
    ENSEMBL proteins: 
     ENSP00000319654  
    Reactome Protein details: Q8NGD0

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    OR4: GPCR / Class A : Olfactory receptors

    3 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000725 Olfact_rcpt
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q8NGD0

    ProtoNet protein and cluster: Q8NGD0

    1 Blocks protein domain: IPB000725 Olfactory receptor signature

    UniProtKB/Swiss-Prot: OR4M1_HUMAN, Q8NGD0
    Similarity: Belongs to the G-protein coupled receptor 1 family


    Find genes that share domains with OR4M1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: OR4M1_HUMAN, Q8NGD0
    Function: Odorant receptor (Potential)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
    GO:0004984olfactory receptor activity IEA--
         
    Find genes that share ontologies with OR4M1           About GenesLikeMe


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    OR4M1_HUMAN, Q8NGD0: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with OR4M1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for OR4M1 About    
    See pathways by source

    SuperPathContained pathways About
    1Olfactory Signaling Pathway
    Olfactory Signaling Pathway0.82
    Olfactory transduction0.82
    2Signaling by GPCR
    Signaling by GPCR0.90
    Signal Transduction0.58
    GPCR downstream signaling0.90


    Find genes that share SuperPaths with OR4M1           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for OR4M1
        Olfactory Signaling Pathway


    1 Kegg Pathway  (Kegg details for OR4M1):
        Olfactory transduction

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OR4M1
    Interactions:

        Search GeneGlobe Interaction Network for OR4M1

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for OR4M1 (ENSP000003196544) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ADRBK2ENSP000003175784STRING: ENSP00000317578
    ARRB2ENSP000002692604STRING: ENSP00000269260
    GNALENSP000003340514STRING: ENSP00000334051
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway ----

    Find genes that share ontologies with OR4M1           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OR4M1



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for OR4M1 gene: 
    NM_001005500.1  

    Unigene Cluster for OR4M1:

    Olfactory receptor, family 4, subfamily M, member 1
    Hs.553829
    Unigene Representative Sequence: BC136987
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000315957(uc010tku.2)
    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat OR4M1

    Additional mRNA sequence: BC136987.1 
    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OR4M1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    OR4M1 Expression
    About this image


    OR4M1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     
     Brain (Nervous System)    fully expand to see all 2 entries
             Pons
    OR4M1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OR4M1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.553829
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for OR4M1 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Olfr7341 , 5 olfactory receptor 7341, 5 85.94(n)1
    91.37(a)1
      14 (26.05 cM)5
    2586581  NM_146664.11  NP_666875.11 
     503198925 
    chicken
    (Gallus gallus)
    Aves LOC7689411 olfactory receptor 4M1-like 61.5(n)
    58.75(a)
      768941  XM_001232110.2  XP_001232111.2 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    72(a)
    1 → many
    GL343220.1(935728-936684)


    ENSEMBL Gene Tree for OR4M1 (if available)
    TreeFam Gene Tree for OR4M1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for OR4M1 gene
    OR4D112  OR4D22  OR4D52  OR4N22  OR4N52  OR4D62  OR4Q22  OR4N42  
    OR4D102  OR4D12  OR4M22  OR4D92  OR4Q32  OR4E22  
    Selected SIMAP similar genes for OR4M1 using alignment to 1 protein entry:     OR4M1_HUMAN(see all similar genes):
    OR4M2    OR4N5    OR4N4    OR4N2    OR4D5    OR4K14
    OR4Q2    OR4F17    OR4F4    OR4F5    OR4K13    OR4K15
    OR4Q3    OR4B1    OR4D1    OR4D10    OR4D11    OR4D2

    Find genes that share paralogs with OR4M1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for OR4M1 (see all 147)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1495196871,2
    --20246493(+) GTAGAA/GCAGAG 1 -- us2k10--------
    rs756877771,2
    C--20246501(+) GAGGAA/GGAAGG 1 -- us2k10--------
    rs124353331,2
    C,F,A,H--20246521(+) TGTGAC/TGACAC 1 -- us2k17Minor allele frequency- T:0.07NA WA 252
    rs1460203151,2
    C--20246522(+) GTGACA/GACACT 1 -- us2k10--------
    rs1896862941,2
    --20246545(+) ATCATA/GTCCCC 1 -- us2k10--------
    rs285237691,2
    C,F--20246582(+) TGTAAT/CGGTAT 1 -- us2k19Minor allele frequency- C:0.28NA WA CSA EA 369
    rs1812740041,2
    --20246630(+) AGGGAC/GAATTA 1 -- us2k10--------
    rs1162760161,2
    C,F--20246660(+) TCACTT/GCCATC 1 -- us2k12Minor allele frequency- G:0.04WA EA 238
    rs1174546501,2
    F--20246683(+) ACATGG/CCATAA 1 -- us2k11Minor allele frequency- C:0.01NA 120
    rs171096151,2
    F,H--20246698(+) AAAATA/GTGTAA 1 -- us2k1 tfbs37Minor allele frequency- G:0.01NA NS EA 556

    HapMap Linkage Disequilibrium report for OR4M1 ( 20248482 - 20249420 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for OR4M1 (see all 62):    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv6n31CNV Duplication19718026
    nsv471369CNV Duplication19718026
    esv34243CNV Loss17911159
    nsv819711CNV Loss19587683
    nsv901198CNV Loss21882294
    dgv45e180CNV Loss20482838
    nsv901192CNV Loss21882294
    nsv901268CNV Loss21882294
    dgv1840n71CNV Loss21882294
    nsv433273CNV Loss18776910

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OR4M1 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OR4M1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    4. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 441670 HGNC: 14735 Ensembl:ENSG00000176299 euGenes: HUgn441670 ECgene: OR4M1 Kegg: 441670
    H-InvDB: OR4M1

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OR4M1 Pharmacogenomics, SNPs, Pathways
    HORDE entry for OR4M1 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OR4M1 gene:
    Search GeneIP for patents involving OR4M1

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     Browse OriGene Antibodies   OriGene RNAi products in human, mouse, rat for OR4M1  
     Browse OriGene qPCR primer pairs and template standards   OriGene Protein Over-expression Lysate for OR4M1  
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     Block miRNA regulation of human, mouse, rat OR4M1 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing OR4M1
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR4M1 Predesigned siRNA for gene silencing in human, mouse, rat OR4M1
     QuantiFast Probe-based Assays in human, mouse, rat OR4M1 QuantiTect SYBR Green Assays in human, mouse, rat OR4M1
     Custom PCR Arrays for OR4M1 Search Chromatin IP Primers for OR4M1
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     Browse ESI BIO Cell Lines and PureStem Progenitors for OR4M1
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     Search Addgene for plasmids for OR4M1
      Search eBioscience for proteins for OR4M1
      Search eBioscience for elisas for OR4M1
      eBioscience FlowRNA Probe Sets
           
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